CV884474

Overview
NameCV884474
Unique NameCV884474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884474 vs. ExPASy Swiss-Prot
Match: ACP_GEOSM (Acyl carrier protein OS=Geobacter sp. (strain M21) GN=acpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = -2
Query:  286 VDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 462
            VD +QVT +  F  DLG DSLD VE+VMALEEEF++EI D++A +I +   AI+YI +H
Sbjct:   18 VDEAQVTNESSFMDDLGADSLDTVELVMALEEEFEIEISDEDAEKIQSVQDAIDYITDH 76          
BLAST of CV884474 vs. ExPASy Swiss-Prot
Match: ACP_GEOSF (Acyl carrier protein OS=Geobacter sp. (strain FRC-32) GN=acpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = -2
Query:  286 VDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 462
            VD +QVT +  F  DLG DSLD VE+VMALEEEF +EI D++A +I +   AI+YI +H
Sbjct:   18 VDEAQVTNEASFMDDLGADSLDTVELVMALEEEFDIEISDEDAEKIQSVQDAIDYITDH 76          
BLAST of CV884474 vs. ExPASy Swiss-Prot
Match: ACP_GEOMG (Acyl carrier protein OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=acpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = -2
Query:  286 RVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 495
            RV  +V     VD +QVT +  F  DLG DSLD VE+VMALEEEF +EI D++A +I +   AI+YI  H
Sbjct:    7 RVKEIVAEQLGVDEAQVTNEASFMDDLGADSLDTVELVMALEEEFDIEISDEDAEKIQSVQDAIDYITEH 76          
BLAST of CV884474 vs. ExPASy Swiss-Prot
Match: ACP_GEOBB (Acyl carrier protein OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=acpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = -2
Query:  286 VDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 462
            VD +QVT +  F  DLG DSLD VE+VMALEEEF++EI D++A +I +   AI+YI +H
Sbjct:   18 VDEAQVTNESSFMDDLGADSLDTVELVMALEEEFEIEISDEDAEKIQSVQDAIDYITDH 76          
BLAST of CV884474 vs. ExPASy Swiss-Prot
Match: ACP_PROVI (Acyl carrier protein OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=acpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11
Identity = 31/75 (41.33%), Postives = 48/75 (64.00%), Query Frame = -2
Query:  295 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 519
            +T+ E+ D+V  ++     V+  Q+ P+  F  DLG DSLD VE++M LE EF ++IPD++A +I     AI+YI
Sbjct:    1 MTEAEIKDKVYDIIVSKMGVNKDQIKPESKFSDDLGADSLDTVELIMELENEFDVQIPDEDAEKIGTVQQAIDYI 75          
BLAST of CV884474 vs. ExPASy Swiss-Prot
Match: ACP_PELLD (Acyl carrier protein OS=Pelodictyon luteolum (strain DSM 273) GN=acpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11
Identity = 31/75 (41.33%), Postives = 48/75 (64.00%), Query Frame = -2
Query:  295 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 519
            +T+ E+ D+V  ++     V+  Q+ P+  F  DLG DSLD VE++M LE EF ++IPD++A +I     AI+YI
Sbjct:    1 MTEAEIRDKVYDIIVSKMGVNKDQIKPESKFSDDLGADSLDTVELIMELENEFDVQIPDEDAEKIGTVQQAIDYI 75          
BLAST of CV884474 vs. ExPASy Swiss-Prot
Match: ACP_HELPS (Acyl carrier protein OS=Helicobacter pylori (strain Shi470) GN=acpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = -2
Query:  277 VDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPMA 462
            VD +QVTP+  F KDLG DSLD VE++MALEE+F +EIPD++A +I      ++YI ++ +A
Sbjct:   17 VDAAQVTPEAEFVKDLGADSLDVVELIMALEEKFGIEIPDEQAEKIVNVGDVVKYIEDNKLA 78          
BLAST of CV884474 vs. ExPASy Swiss-Prot
Match: ACP_HELP2 (Acyl carrier protein OS=Helicobacter pylori (strain P12) GN=acpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = -2
Query:  277 VDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPMA 462
            VD +QVTP+  F KDLG DSLD VE++MALEE+F +EIPD++A +I      ++YI ++ +A
Sbjct:   17 VDAAQVTPEAEFVKDLGADSLDVVELIMALEEKFGIEIPDEQAEKIVNVGDVVKYIEDNKLA 78          
BLAST of CV884474 vs. ExPASy Swiss-Prot
Match: ACP_HAES2 (Acyl carrier protein OS=Haemophilus somnus (strain 2336) GN=acpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = -2
Query:  286 DRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 498
            +RV  ++     V    V P+  F +DLG DSLD VE+VMALEEEF +EIPD+EA +I     AI+Y+ N+
Sbjct:    5 ERVKKIIVEQLGVKEDDVKPEASFIEDLGADSLDTVELVMALEEEFDIEIPDEEAEKITTVQSAIDYVQNN 75          
BLAST of CV884474 vs. ExPASy Swiss-Prot
Match: ACP_HAES1 (Acyl carrier protein OS=Haemophilus somnus (strain 129Pt) GN=acpP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = -2
Query:  286 DRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 498
            +RV  ++     V    V P+  F +DLG DSLD VE+VMALEEEF +EIPD+EA +I     AI+Y+ N+
Sbjct:    5 ERVKKIIVEQLGVKEDDVKPEASFIEDLGADSLDTVELVMALEEEFDIEIPDEEAEKITTVQSAIDYVQNN 75          
The following BLAST results are available for this feature:
BLAST of CV884474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
ACP_GEOSM7.167e-1155.93Acyl carrier protein OS=Geobacter sp. (strain M21)... [more]
ACP_GEOSF7.167e-1155.93Acyl carrier protein OS=Geobacter sp. (strain FRC-... [more]
ACP_GEOMG7.167e-1151.43Acyl carrier protein OS=Geobacter metallireducens ... [more]
ACP_GEOBB7.167e-1155.93Acyl carrier protein OS=Geobacter bemidjiensis (st... [more]
ACP_PROVI9.361e-1141.33Acyl carrier protein OS=Prosthecochloris vibriofor... [more]
ACP_PELLD9.361e-1141.33Acyl carrier protein OS=Pelodictyon luteolum (stra... [more]
ACP_HELPS9.361e-1151.61Acyl carrier protein OS=Helicobacter pylori (strai... [more]
ACP_HELP29.361e-1151.61Acyl carrier protein OS=Helicobacter pylori (strai... [more]
ACP_HAES29.361e-1147.89Acyl carrier protein OS=Haemophilus somnus (strain... [more]
ACP_HAES19.361e-1147.89Acyl carrier protein OS=Haemophilus somnus (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003F09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884474 ID=CV884474; Name=CV884474; organism=Citrus sinensis; type=EST; length=562bp
TTTTTTTTTTTTTTTGCATCTCAAGGAGGACAATGATAAAATGTCACCAG
ATCAAGCATCCAAATGCAGAATTGGATTACAGCAGAAAAACAACAGACGT
CATGAGACATGGGTTCTTCAAATTCTACTCATTATCAGACAGATTTGGAT
TATTTTCCATCTACCTTACAGAGATCATATGCAAAGCCTACAAAAAACAG
GGTAGAACAGATAATTTTTTTTCTTGATGCCCCCACAATAAATTCAAGAA
GAGAAACTTCCTTATTCAAATTAACTAGCCATCGGATGATTGTAGATGTA
CTCAATGGCAAGATTACACGCATCAATCCTAACAGCTTCCTTGTCAGGGA
TTTCAAGCTTGAACTCCTCTTCTAGCGCCATTACAATCTCCACATTGTCC
AAGCTATCCAAGCCCAAATCCTTCTGGAAATGCACATCAGGAGTCACCTG
GGAGGGATCGACTTTGGGGAAGCACTTGACAACAGAGAGCACTCTGTCAA
TGACCTCTTCTTTGGTCAAATGATCGTCGTGGGATGACATGAAACGCAGA
GAACCTAACCCT
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