CV884449

Overview
NameCV884449
Unique NameCV884449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884449 vs. ExPASy Swiss-Prot
Match: HSE1_CRYNE (Class E vacuolar protein-sorting machinery protein HSE1 OS=Cryptococcus neoformans GN=HSE1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.834e-11
Identity = 39/137 (28.47%), Postives = 74/137 (54.01%), Query Frame = 2
Query:  227 NPVEKLVEDATSEALEEPDWAMNLDLCDMINTE-KISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEK-AFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSEL--RYLPVYEETYKSLRSR 625
            +P + LV  AT E L   DWA+N+D+CD ++++ +  +   +  ++KR+  ++P +Q  AL L  ++ +NC K    E+++      + +LI+D  T    + KAL  +++W +   E     L +  E Y  LR++
Sbjct:    7 SPYDDLVIKATDENLASEDWALNMDVCDKVSSDGQNGARQAVTALQKRLSHRNPNVQIYALELANSLAQNCGKDLLGELSSRNWTSALDRLINDRATSTPVKKKALSFVKSWAKQIEETGDPNLGLMGELYDQLRAK 143          
BLAST of CV884449 vs. ExPASy Swiss-Prot
Match: YB0G_SCHPO (Probable ADP-ribosylation factor-binding protein C25H2.16c OS=Schizosaccharomyces pombe GN=SPBC25H2.16c PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.620e-11
Identity = 59/186 (31.72%), Postives = 98/186 (52.69%), Query Frame = 2
Query:  242 LVEDATSEALEEPDWAMNLDLCDMIN-TEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFS-EVAAERVLDEMVKLIDDPQTVVNNRNKALVM----IEAWGESTSEL-RY---LPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETEVDATLAEQIQRDIRGQSFTKEQ 769
            L+++AT     EPD A+NLD+ D+IN T      +    I +++  ++P + YLAL LL+  VKNC  AF  ++A++  L+E+V+    P+   +  NK  VM    IE W ++   + RY   L    + ++ L  +G  FP  D E+LA +    +SV +T      AE+++++ R     K Q
Sbjct:   11 LIQNATEPYAFEPDLAVNLDIADLINQTGGNLPREAAFAIVRKVNDRNPTVAYLALNLLDICVKNCGYAFRLQIASKEFLNELVRRF--PERPPSRLNKIQVMILSLIEEWRKTICRVDRYKEDLGFIRDMHRLLSYKGYTFPEIDKENLAVL--SQKSVLKT------AEELEKEDREAMSAKLQ 186          
BLAST of CV884449 vs. ExPASy Swiss-Prot
Match: HSE1_COCIM (Class E vacuolar protein-sorting machinery protein HSE1 OS=Coccidioides immitis GN=HSE1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.951e-11
Identity = 47/182 (25.82%), Postives = 81/182 (44.51%), Query Frame = 2
Query:  227 NPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNC-EKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETEVDATLAEQIQRDIRGQSFTKEQ 769
            N  + +V  AT E L   +W   LD+CD ++ ++  + D +  + KR+  ++  +Q     L   + +NC  KA  E+A++   D +++L +D  T    ++K L  +E W E  S      + E  Y  L+S+          +   I    R   E E+   LA  I+     QS T +Q
Sbjct:    7 NAYDDIVAKATDENLTSENWEYILDVCDKVSADESGAKDAVASMIKRLAHRNANVQLYTFELANALSQNCGPKAHRELASKSFTDALLRLANDRNTHPQVKSKILEHMEQWTEMFSSNPDFGIMEHAYMKLKSQNPNIQPPSKPTKRQITELDRQKEEEELQMALALSIKEK---QSETSKQ 185          
The following BLAST results are available for this feature:
BLAST of CV884449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
HSE1_CRYNE5.834e-1128.47Class E vacuolar protein-sorting machinery protein... [more]
YB0G_SCHPO7.620e-1131.72Probable ADP-ribosylation factor-binding protein C... [more]
HSE1_COCIM9.951e-1125.82Class E vacuolar protein-sorting machinery protein... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_003E06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884449 ID=CV884449; Name=CV884449; organism=Citrus sinensis; type=EST; length=910bp
AGAAAGTTCAATAACTTAACCGAGTCGTTGGGCGTCGTCTCAACTCAACA
ACTCTATTTTCAGTTTTAAAGGATTTTAAACCGTTGCAAAGATGAGTGAT
AATTTGATGGAGAAAGTTAGTGCCTTTGGTGAACGCCTCAAGATTGGAGG
GGCTGAAGTGGGTCGTAAAATGAGTGAAGGAATGAGCCAAATGAGCTTCA
AGATGAAGGAGCTCTTCCAAGGCCCAAACCCAGTTGAAAAACTTGTTGAG
GATGCCACCTCTGAGGCCCTTGAGGAGCCTGATTGGGCCATGAATCTCGA
TCTCTGTGACATGATCAATACCGAGAAAATCAGCAGTGTTGATTTGATCC
GTGGCATAAAGAAAAGGATCATGTTGAAGAGCCCTAGGATTCAGTATTTG
GCCTTGGTACTGCTTGAAACAGTTGTTAAAAACTGTGAGAAGGCCTTCTC
CGAGGTGGCAGCTGAGAGGGTTCTTGATGAAATGGTCAAGCTGATTGATG
ATCCTCAAACTGTTGTCAATAATAGGAACAAGGCTTTGGTGATGATTGAA
GCTTGGGGTGAGTCCACAAGCGAACTTCGATACTTGCCCGTATATGAAGA
AACATACAAGAGTTTAAGATCACGGGGCATCCGGTTTCCGGGACGTGACA
ATGAGAGCTTGGCGCCTATTTTTACACCTCCTCGTTCAGTTTCAGAAACA
GAAGTGGATGCTACTCTTGCTGAGCAGATTCAGCGTGATATTCGTGGGCA
AAGCTTTACCAAAGAACAAACAAAGGAAGCCTTTGATGTTGCAAGAAACA
GTATCGAGCTTCTTTCAACTGTTCTATCATCCTCACCCCAACAAGACGCT
TTACAGGATGACTTGACAACTACACTAGTGCAACAGTGTCGTCAGTCCCA
ATTCACTGTC
back to top