CX043388

Overview
NameCX043388
Unique NameCX043388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_HALSA (30S ribosomal protein S11P OS=Halobacterium salinarium GN=rps11p PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 9.763e-25
Identity = 56/113 (49.56%), Postives = 80/113 (70.80%), Query Frame = -2
Query:  218 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 556
            +G+AH+ ASFN+T + VTD +G ETL + +GG  VK +RDE+SPYAAM  A+ +++   + GI  +H+++R            GAQ+A+RALAR+G++IGRIEDVTPIP D T
Sbjct:    7 WGIAHVHASFNNTIMTVTDQTGAETLAKSSGGSVVKQNRDEASPYAAMQMAEQLAEEVLDQGIEKVHVRVRGPGGNLQRSPGPGAQAAIRALARAGLEIGRIEDVTPIPHDGT 119          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_METS3 (30S ribosomal protein S11P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps11p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.665e-24
Identity = 55/113 (48.67%), Postives = 81/113 (71.68%), Query Frame = -2
Query:  218 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 556
            +G+A+I++S+N+T I VTD++G ET+ + +GG  V+ADR ++SP+AAM AA  ++   KE G   LHI++RA           GAQ+ +RALAR+G+KIG+IED+TPIP D T
Sbjct:    7 WGIANIYSSYNNTIITVTDITGAETISQWSGGKVVRADRQQASPFAAMAAATRIADDAKEKGFVGLHIRVRAPGGNGHRSPGPGAQATIRALARAGIKIGKIEDITPIPHDGT 119          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_PYRCJ (30S ribosomal protein S11P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps11p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.841e-24
Identity = 58/112 (51.79%), Postives = 79/112 (70.54%), Query Frame = -2
Query:  221 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDS 556
            +G+A I++S N+T I +TDL+G ET+ R++GGM V+AD+D+ SP+AAM AA   +Q     GI A+HIK+R            GA +A+RALARSG+ IGRIEDVTPIP D+
Sbjct:   18 WGIAWIYSSSNNTIITITDLTGAETVARVSGGMVVRADKDKPSPWAAMQAAYKAAQLALARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLVIGRIEDVTPIPHDT 129          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_PYRIL (30S ribosomal protein S11P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps11p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.710e-24
Identity = 58/112 (51.79%), Postives = 79/112 (70.54%), Query Frame = -2
Query:  221 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDS 556
            +G+A I++S N+T I +TDL+G ET+ R++GGM V+AD+D+ SP+AAM AA   +Q     GI A+HIK+R            GA +A+RALARSG+ IGRIEDVTPIP D+
Sbjct:   16 WGIAWIYSSSNNTIITITDLTGAETVARVSGGMVVRADKDKPSPWAAMQAAYKAAQLALARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLIIGRIEDVTPIPHDT 127          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_METS5 (30S ribosomal protein S11P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps11p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.710e-24
Identity = 58/112 (51.79%), Postives = 78/112 (69.64%), Query Frame = -2
Query:  221 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDS 556
            +G+A I+AS N+T I +TD++G E + + +GGM VKADR++ SPYAAMLAA   +    + G+ A+HIK+RA           GAQ A+R+LARSG  IGRIEDVTPIP D+
Sbjct:    9 WGLARIYASQNNTIITITDITGAEVISKASGGMMVKADREKPSPYAAMLAANKAASDALDKGLMAIHIKVRAPGGAGPKTPGPGAQPAIRSLARSGFIIGRIEDVTPIPHDT 120          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_HALMA (30S ribosomal protein S11P OS=Haloarcula marismortui GN=rps11p PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 4.846e-24
Identity = 54/116 (46.55%), Postives = 80/116 (68.97%), Query Frame = -2
Query:  218 EHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 565
            E ++G+AH+ ASFN+T I +TD +G ETL + +GG  VK +RDE+SPYAAM  A+ V+++  + G+  + +++R            GAQ+ +RALAR+G++IGRIEDVTP P D T
Sbjct:    6 EDIWGIAHVHASFNNTIITITDQTGAETLAKSSGGTVVKQNRDEASPYAAMQMAEVVAEKALDRGVEGVDVRVRGPGGNLQTSPGPGAQATIRALARAGLEIGRIEDVTPTPHDGT 121          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_THEPD (30S ribosomal protein S11P OS=Thermofilum pendens (strain Hrk 5) GN=rps11p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.328e-24
Identity = 62/142 (43.66%), Postives = 85/142 (59.86%), Query Frame = -2
Query:  221 SSAAMSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDS 646
            S  A  RR+TRE +                 G+A I+AS+N+T IH+TDLSG ET+   +GGM  KADRD+ SP+AAM AA   ++   + GI  +H+K++A           GA  A+RAL R+G+ + RIEDVTP+PTDS
Sbjct:   15 SGKAEERRETREKQVRGDV------------GIAWIYASYNNTIIHITDLSGAETIAFASGGMVAKADRDKPSPWAAMQAAARAAKIALDKGIRVVHVKIKAPGGYGPKTPGPGAGPAIRALVRAGLMVDRIEDVTPLPTDS 144          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_PYRAR (30S ribosomal protein S11P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps11p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.079e-23
Identity = 57/111 (51.35%), Postives = 77/111 (69.37%), Query Frame = -2
Query:  224 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTD 556
            +G+A I++S N+T I +TDL+G ET+ R++GG  V+AD+D+ SP+AAM AA   +Q     GI A+HIK+R            GA +A+RALARSG+ IGRIEDVTPIP D
Sbjct:   15 WGIAWIYSSSNNTIITITDLTGAETVARVSGGQVVRADKDKPSPWAAMQAAYKAAQLAMARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLVIGRIEDVTPIPHD 125          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_SULAC (30S ribosomal protein S11P OS=Sulfolobus acidocaldarius GN=rps11p PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.410e-23
Identity = 58/112 (51.79%), Postives = 78/112 (69.64%), Query Frame = -2
Query:  221 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDS 556
            +G A I+AS N+T I +TD++G E + + +GGM VKADR++ SPYAAMLAA   +    + GI+A+HIK+RA           GAQ A+RALAR+G  IGRIEDVTP+P D+
Sbjct:    9 WGNARIYASQNNTIITITDITGAEIISKASGGMVVKADREKPSPYAAMLAANKAANDAFDKGISAIHIKVRAQGGYGSKTPGPGAQPAIRALARAGFIIGRIEDVTPLPHDT 120          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_PYRAE (30S ribosomal protein S11P OS=Pyrobaculum aerophilum GN=rps11p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.410e-23
Identity = 57/111 (51.35%), Postives = 77/111 (69.37%), Query Frame = -2
Query:  224 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTD 556
            +G+A I++S N+T I +TDL+G ET+ R++GG  V+AD+D+ SP+AAM AA   +Q     GI A+HIK+R            GA +A+RALARSG+ IGRIEDVTPIP D
Sbjct:   10 WGIAWIYSSSNNTIITITDLTGAETVARVSGGQVVRADKDKPSPWAAMQAAYKAAQLALARGINAVHIKVRGPGGYGMKVPGPGASAAIRALARSGLVIGRIEDVTPIPHD 120          
The following BLAST results are available for this feature:
BLAST of CX043388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
RS11_HALSA9.763e-2549.5630S ribosomal protein S11P OS=Halobacterium salina... [more]
RS11_METS31.665e-2448.6730S ribosomal protein S11P OS=Methanobrevibacter s... [more]
RS11_PYRCJ2.841e-2451.7930S ribosomal protein S11P OS=Pyrobaculum calidifo... [more]
RS11_PYRIL3.710e-2451.7930S ribosomal protein S11P OS=Pyrobaculum islandic... [more]
RS11_METS53.710e-2451.7930S ribosomal protein S11P OS=Metallosphaera sedul... [more]
RS11_HALMA4.846e-2446.5530S ribosomal protein S11P OS=Haloarcula marismort... [more]
RS11_THEPD6.328e-2443.6630S ribosomal protein S11P OS=Thermofilum pendens ... [more]
RS11_PYRAR1.079e-2351.3530S ribosomal protein S11P OS=Pyrobaculum arsenati... [more]
RS11_SULAC1.410e-2351.7930S ribosomal protein S11P OS=Sulfolobus acidocald... [more]
RS11_PYRAE1.410e-2351.3530S ribosomal protein S11P OS=Pyrobaculum aerophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10G03_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10G03-N6-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043388 ID=CX043388; Name=CX043388; organism=Citrus sinensis; type=EST; length=683bp
TTTTTAGTCTTGCCACTGTATAAACTTAATTGATCCGAAAGGCTAACACA
AAGGAATCCAAGACTACAGACATTCCAAACAACAAAATTGGGAAATAACT
CTTGCATCTAACAGAAGAGAGTGAAACTCTCTGTAACCACGGCATCATCT
TGAACGTTATGGATGGGTGTGAGGAAAAGAATTACAACCTTCTACCCCTT
CTACCACCCTTTCTGCGGGTACTGTCGGTGGGAATTGGAGTCACATCCTC
TATGCGGCCAATCTTCATTCCAGAACGAGCAAGAGCTCTAAGTGCTGACT
GAGCACCTGGACCAGGAGTTTTAGTTTTGTTACCCCCAGTAGCCCGGAGC
TTAATATGAAGAGCAGTAATGCCAAGCTCCTTGCATCGTTGAGAAACATC
TTGTGCTGCAAGCATAGCTGCATAAGGGGAGGATTCATCCCTGTCAGCTT
TAACCTTCATACCACCAGTAATGCGCACAAGAGTTTCTCTTCCAGACAAG
TCAGTCACATGAATGAAAGTGTCATTAAACGACGCAAAAATGTGGGCAAC
GCCAAATACATGCTCGCCATCTCTAACGGCAGGTCCAAGAGTAACATTTT
CCTCCTTAGGCTCTCTGGTCTTTCTTCTTGACATGGCTGCTGATGACACG
GAGAGTTGATCACAAAAGCCTCGAAATACACCT
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