CX043388

Overview
NameCX043388
Unique NameCX043388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_METNO (30S ribosomal protein S11 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rpsK PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12
Identity = 44/110 (40.00%), Postives = 60/110 (54.55%), Query Frame = -2
Query:  230 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 559
            V GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D  ++  E G+  L +++             G +SALRAL  +G  +  I DVTPIP
Sbjct:   17 VSGVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAGRKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTPIP 117          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_HYPNA (30S ribosomal protein S11 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rpsK PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12
Identity = 39/108 (36.11%), Postives = 62/108 (57.41%), Query Frame = -2
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            G+ H+ +SFN+T + +TD  G       +G M  K  R +S+PYAA +AA+D +++ KE G+  + +++R            G +SALRAL  +G+ +  I D TPIP
Sbjct:   19 GIVHVNSSFNNTMVTITDAQGNTISWSSSGVMNFKGSR-KSTPYAAQMAAEDAAKKAKEHGLQTVEVRVRG--------PGSGRESALRALQAAGLTVTAINDTTPIP 117          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_SPHWW (30S ribosomal protein S11 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rpsK PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 44/108 (40.74%), Postives = 59/108 (54.63%), Query Frame = -2
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D  ++  E G+  L ++++            G +SALRAL   G  I  I DVTPIP
Sbjct:   19 GVAHVNASFNNTMITITDAQGNAIAWSSAGMMGFKGSR-KSTPYAAQVAAEDAGKKAAEHGVRTLEVEVKG--------PGSGRESALRALQAVGFHITSIRDVTPIP 117          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_MARMM (30S ribosomal protein S11 OS=Maricaulis maris (strain MCS10) GN=rpsK PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = -2
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAH+ ASFN+T + +TD  G        G M  K  R +S+PYAA +AA+D  ++  E G+  + +K+             G +SALRAL   G  I  I+DVTPIP
Sbjct:   19 GVAHVSASFNNTMVTITDAQGNAISWSSAGHMGFKGSR-KSTPYAAQMAAEDAGKKAMEHGMKTIEVKVSG--------PGSGRESALRALQSVGFTITTIQDVTPIP 117          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_AZOSE (30S ribosomal protein S11 OS=Azoarcus sp. (strain EbN1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = -2
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +  +E G+  L ++++            G +SA+RAL   GMKI  I D+TPIP
Sbjct:   19 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAEAAGKAAQECGVKNLEVRIKG--------PGPGRESAVRALNALGMKISSITDITPIP 117          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_ZYMMO (30S ribosomal protein S11 OS=Zymomonas mobilis GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 44/108 (40.74%), Postives = 59/108 (54.63%), Query Frame = -2
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D  ++  E G+  L ++++            G +SALRAL   G  I  I DVTPIP
Sbjct:   19 GVAHVNASFNNTMITITDAQGNAISWSSAGMMGFKGSR-KSTPYAAQVAAEDAGKKAAEHGVRTLEVEVKG--------PGSGRESALRALQAVGFHITSIRDVTPIP 117          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_XANP2 (30S ribosomal protein S11 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 43/108 (39.81%), Postives = 60/108 (55.56%), Query Frame = -2
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D +++  E G+  L +++             G +SALRAL  +G  +  I DVTPIP
Sbjct:   19 GVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAARKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFLVTSIRDVTPIP 117          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_WIGBR (30S ribosomal protein S11 OS=Wigglesworthia glossinidia brevipalpis GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 46/126 (36.51%), Postives = 68/126 (53.97%), Query Frame = -2
Query:  230 KEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 607
            K++N ++       + + G+AHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+  S+  KE GI  L I ++            G +S +RAL  SG KI  I DVTPIP
Sbjct:    3 KKQNSSISRKKIKRQILEGIAHIHASFNNTIVTITDRQGNTLGWATSGGSGFRGSR-KSTPFAAQVAAEKCSEIAKEYGIKNLEIMVKG--------PGPGRESTIRALNSSGFKITNITDVTPIP 119          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_SILST (30S ribosomal protein S11 OS=Silicibacter sp. (strain TM1040) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 47/134 (35.07%), Postives = 71/134 (52.99%), Query Frame = -2
Query:  233 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPI 634
            M+R KTR  ++E   +           GVAH+ +SFN+T I ++D+ G        G M  K  R +S+PYAA +AA+D  ++ ++ G+  L ++++            G +SALRALA  G  I  I DVTPI
Sbjct:    1 MARDKTRTKRKERKNIAS---------GVAHVNSSFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQMAAEDAGRKAQDHGVKTLEVEVQG--------PGSGRESALRALAAIGFNITNIRDVTPI 116          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_RHOS5 (30S ribosomal protein S11 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = -2
Query:  233 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPI 634
            M+R KTR  ++E   +           GVAH+ +SFN+T I ++D+ G        G M  K  R +S+PYAA +AA+D +++ +E G+  + ++++            G +SALRALA +G+ I  I DVTP+
Sbjct:    1 MARDKTRMKRKERKNIAA---------GVAHVNSSFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQMAAEDAAKKAQEHGMKTIEVEVQG--------PGSGRESALRALAAAGLNITSIRDVTPM 116          
The following BLAST results are available for this feature:
BLAST of CX043388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
RS11_METNO4.255e-1240.0030S ribosomal protein S11 OS=Methylobacterium nodu... [more]
RS11_HYPNA4.255e-1236.1130S ribosomal protein S11 OS=Hyphomonas neptunium ... [more]
RS11_SPHWW5.557e-1240.7430S ribosomal protein S11 OS=Sphingomonas wittichi... [more]
RS11_MARMM5.557e-1239.8130S ribosomal protein S11 OS=Maricaulis maris (str... [more]
RS11_AZOSE5.557e-1237.9630S ribosomal protein S11 OS=Azoarcus sp. (strain ... [more]
RS11_ZYMMO7.257e-1240.7430S ribosomal protein S11 OS=Zymomonas mobilis GN=... [more]
RS11_XANP27.257e-1239.8130S ribosomal protein S11 OS=Xanthobacter autotrop... [more]
RS11_WIGBR7.257e-1236.5130S ribosomal protein S11 OS=Wigglesworthia glossi... [more]
RS11_SILST7.257e-1235.0730S ribosomal protein S11 OS=Silicibacter sp. (str... [more]
RS11_RHOS57.257e-1234.3330S ribosomal protein S11 OS=Rhodobacter sphaeroid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10G03_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10G03-N6-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043388 ID=CX043388; Name=CX043388; organism=Citrus sinensis; type=EST; length=683bp
TTTTTAGTCTTGCCACTGTATAAACTTAATTGATCCGAAAGGCTAACACA
AAGGAATCCAAGACTACAGACATTCCAAACAACAAAATTGGGAAATAACT
CTTGCATCTAACAGAAGAGAGTGAAACTCTCTGTAACCACGGCATCATCT
TGAACGTTATGGATGGGTGTGAGGAAAAGAATTACAACCTTCTACCCCTT
CTACCACCCTTTCTGCGGGTACTGTCGGTGGGAATTGGAGTCACATCCTC
TATGCGGCCAATCTTCATTCCAGAACGAGCAAGAGCTCTAAGTGCTGACT
GAGCACCTGGACCAGGAGTTTTAGTTTTGTTACCCCCAGTAGCCCGGAGC
TTAATATGAAGAGCAGTAATGCCAAGCTCCTTGCATCGTTGAGAAACATC
TTGTGCTGCAAGCATAGCTGCATAAGGGGAGGATTCATCCCTGTCAGCTT
TAACCTTCATACCACCAGTAATGCGCACAAGAGTTTCTCTTCCAGACAAG
TCAGTCACATGAATGAAAGTGTCATTAAACGACGCAAAAATGTGGGCAAC
GCCAAATACATGCTCGCCATCTCTAACGGCAGGTCCAAGAGTAACATTTT
CCTCCTTAGGCTCTCTGGTCTTTCTTCTTGACATGGCTGCTGATGACACG
GAGAGTTGATCACAAAAGCCTCGAAATACACCT
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