CV884438

Overview
NameCV884438
Unique NameCV884438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length161
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1AC_PORPU (Elongation factor 1-alpha C OS=Porphyra purpurea GN=TEF-C PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.062e-12
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = -1
Query:   18 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMIAA 158
            GTSQAD A+L+I S  G FEAGIS++GQTREHALLA+T GVKQMI A
Sbjct:  105 GTSQADLAILVIASPPGEFEAGISQNGQTREHALLAYTLGVKQMIVA 151          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A1_XENLA (Elongation factor 1-alpha OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.822e-12
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = -1
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQAD A+L++ + TG FEAG+S++GQTREHALLA+T GVKQ+I
Sbjct:  108 GTSQADVALLVVSAATGEFEAGVSRNGQTREHALLAYTMGVKQLI 152          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.520e-11
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = -1
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQAD A+LI+ + TG FEAGISK+GQTREH LL++T GVKQMI
Sbjct:  105 GTSQADVAILIVAAGTGEFEAGISKNGQTREHILLSYTLGVKQMI 149          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_EIMBO (Elongation factor 1-alpha (Fragment) OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.985e-11
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = -1
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQAD A+L++ +  GGFE   SK+GQTREHALLAFT GVKQMI
Sbjct:    1 GTSQADVALLVVPADQGGFEGAFSKEGQTREHALLAFTLGVKQMI 45          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_BLAHO (Elongation factor 1-alpha OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.775e-11
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = -1
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQAD A+L+I S  G FEAG SK+GQTREHALLA T GVKQMI
Sbjct:  105 GTSQADVAILVIASGAGEFEAGYSKNGQTREHALLANTLGVKQMI 149          
The following BLAST results are available for this feature:
BLAST of CV884438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
EF1AC_PORPU3.062e-1274.47Elongation factor 1-alpha C OS=Porphyra purpurea G... [more]
EF1A1_XENLA6.822e-1268.89Elongation factor 1-alpha OS=Xenopus laevis PE=1 S... [more]
EF1A_ENTHI1.520e-1173.33Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A_EIMBO1.985e-1171.11Elongation factor 1-alpha (Fragment) OS=Eimeria bo... [more]
EF1A_BLAHO5.775e-1175.56Elongation factor 1-alpha OS=Blastocystis hominis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003D11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884438 ID=CV884438; Name=CV884438; organism=Citrus sinensis; type=EST; length=161bp
TGGCGTCCATCTTGTTCAGCAGCAATCATCTGCTTCACACCACGGGTGAA
AGCAAGCAAAGCATGCTCACGAGTCTGACCATCCTTGGAGATACCAGCTT
CAAAACCACCGGTGGTGGAGTCAATGATGAGGACGGCACAGTCAGCCTGT
GAGGTACCCCT
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