EY665274

Overview
NameEY665274
Unique NameEY665274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1084
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDHM_SCHPO (Malate dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe GN=MDH1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.192e-26
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 1
Query:  217 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ-LENALTGVDLVIIPARRSEEP 462
            FKVA+LGA GGIGQPL+ML+K+N  VS L L+D+   PGV ADI H++T + V G+    + LE AL G D+VIIPA    +P
Sbjct:   29 FKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRGAPGVAADIGHINTTSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKP 111          

HSP 2 Score: 51.9878 bits (123), Expect = 5.192e-26
Identity = 25/59 (42.37%), Postives = 34/59 (57.63%), Query Frame = 2
Query:  446 GVPRNPGMTREDLFKINAGMAGTLCEGIAKCGPNATVNLISNPGNSKVPYGRKGFQKSG 622
            GVPR PGMTR+DLF  NA +   L     +  P A   +++NP NS VP  +K  ++ G
Sbjct:  106 GVPRKPGMTRDDLFATNASIVRDLAFAAGETCPEAKYLVVTNPVNSTVPIFKKALERVG 164          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDHM_SCHMA (Malate dehydrogenase, mitochondrial (Fragment) OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.607e-24
Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query:  238 AAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEP 462
            A+GGIG+PL++L+K +PL+S L LYD+ +  GV AD+SH++T A V   LG  +L   LTG ++VIIPA    +P
Sbjct:    1 ASGGIGEPLSLLLKQSPLISQLALYDIAHVKGVAADLSHIETQAHVTAHLGPGELAECLTGANVVIIPAGLPRKP 75          

HSP 2 Score: 53.9138 bits (128), Expect = 3.607e-24
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 2
Query:  446 GVPRNPGMTREDLFKINAGMAGTLCEGIAKCGPNATVNLISNPGNSKVP 592
            G+PR PGMTR+DLF  NA +   L +  AK  P A + +I+NP NS VP
Sbjct:   70 GLPRKPGMTRDDLFNTNASIVAELIDSCAKNCPKAMICIITNPVNSTVP 118          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDHM1_ARATH (Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.253e-22
Identity = 56/108 (51.85%), Postives = 73/108 (67.59%), Query Frame = 1
Query:  148 NLQMEENSCLRQAKCR---AKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEP 462
            ++ +  ++  +QA  R   + G     KVAILGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV AD+ H++T + V G++G   L  AL G DLVIIPA    +P
Sbjct:    4 SMLVRSSASAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKP 111          

HSP 2 Score: 76.6406 bits (187), Expect = 2.760e-13
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = 2
Query:  416 QGWTLSLSLPGVPRNPGMTREDLFKINAGMAGTLCEGIAKCGPNATVNLISNPGNSKVPYGRKGFQKSGDFMNQKTPG 649
            +G  L +   GVPR PGMTR+DLF INAG+   LC  IAK  P+A +N+ISNP NS VP   + F+K+G +  +K  G
Sbjct:   96 EGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEKKLFG 173          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDHM_BRANA (Malate dehydrogenase, mitochondrial OS=Brassica napus GN=MDH PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.249e-22
Identity = 53/89 (59.55%), Postives = 64/89 (71.91%), Query Frame = 1
Query:  196 AKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEP 462
            + G     KVAILGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV AD+ H++T + V G++G   L  AL G DLVIIPA    +P
Sbjct:   23 SSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVVGYMGDDNLAKALEGADLVIIPAGVPRKP 111          

HSP 2 Score: 73.1738 bits (178), Expect = 3.052e-12
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 2
Query:  416 QGWTLSLSLPGVPRNPGMTREDLFKINAGMAGTLCEGIAKCGPNATVNLISNPGNSKVPYGRKGFQKSGDFMNQKTPG 649
            +G  L +   GVPR PGMTR+DLF INAG+   L   IAK  P+A VN+ISNP NS VP   + F+K+G +  +K  G
Sbjct:   96 EGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLWSAIAKYCPHALVNMISNPVNSTVPIAAEIFKKAGMYDEKKLFG 173          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDHM2_ARATH (Malate dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.754e-21
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 1
Query:  220 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEP 462
            KV ILGAAGGIGQPL++LMK+NPLVS L LYD+ NTPGV AD+ H++T + V G++G   L  AL G DLVIIPA    +P
Sbjct:   31 KVVILGAAGGIGQPLSLLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKP 111          

HSP 2 Score: 72.7886 bits (177), Expect = 3.986e-12
Identity = 39/78 (50.00%), Postives = 49/78 (62.82%), Query Frame = 2
Query:  416 QGWTLSLSLPGVPRNPGMTREDLFKINAGMAGTLCEGIAKCGPNATVNLISNPGNSKVPYGRKGFQKSGDFMNQKTPG 649
            +G  L +   GVPR PGMTR+DLF INAG+   L   IAK  P A VN+ISNP NS VP   + F+K+G +  +K  G
Sbjct:   96 EGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEKKLFG 173          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDHP_ARATH (Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.045e-20
Identity = 64/151 (42.38%), Postives = 87/151 (57.62%), Query Frame = 1
Query:  211 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEPWNDQGRSFQNQCWNGRDTL*RDRKVWPQCDCQFDQ*SRELQSSLWP--QRFSKKRGLYEPKNSWGST 657
            A +KVA+LGAAGGIGQPL++L+K++PLVS LHLYD+ N  GV AD+SH +T + VR F G  +L + L  V++V+IPA    +P   +   F N   N   TL     V   C   F        +S  P      KK+G+Y+PK  +G T
Sbjct:   81 ASYKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDIANVKGVAADLSHCNTPSQVRDFTGPSELADCLKDVNVVVIPAGVPRKPGMTRDDLF-NINANIVKTL--VEAVAENCPNAFIHIISNPVNSTVPIAAEVLKKKGVYDPKKLFGVT 228          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDHM_CAEEL (Probable malate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=mdh-1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.511e-19
Identity = 66/170 (38.82%), Postives = 90/170 (52.94%), Query Frame = 1
Query:  151 LQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEPWNDQGRSFQNQCWNGRDTL*RDRKVWPQCDCQFDQ*SRELQSSL-WPQRFSKKRGLYEPKNSWGST 657
            +Q   NS LR    R    A   KVA+LGAAGGIGQPL +L+K +PLV+ L LYDVVNTPGV AD+SH+D+ A V    G  +L  A+   D+++IPA    +P   +   F       RD      K  P+        +  + S++       KK G+Y+PK  +G T
Sbjct:    9 VQAAANSGLRAVSVRHSSQAP--KVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVNTPGVAADLSHIDSNAKVTAHTGPKELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKASPKALIAII--TNPVNSTVPIASEVLKKAGVYDPKRVFGVT 174          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDH_HAEDU (Malate dehydrogenase OS=Haemophilus ducreyi GN=mdh PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 1.706e-19
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 2
Query:  446 GVPRNPGMTREDLFKINAGMAGTLCEGIAKCGPNATVNLISNPGNSKVPYGRKGFQKSGDFMNQKTPG 649
            G+ R PGMTR DLF INAG+   L E +A+  P A + +++NP N+ VP   +  +K+G +   K  G
Sbjct:   85 GIARKPGMTRADLFNINAGIVKDLVEKVAEVCPMACIGIVTNPVNTLVPIAAEVLRKAGVYDKSKLFG 152          

HSP 2 Score: 56.9954 bits (136), Expect = 1.706e-19
Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = 1
Query:  220 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ-PQL-----ENALTGVDLVIIPARRSEEP 462
            KV +LGAAGGIGQ L++L+K+  P  + L LYD+   TPG+  DISH+ T     G+ G+ P +       AL   +LVII A  + +P
Sbjct:    2 KVTVLGAAGGIGQTLSLLLKLRLPAGADLALYDISPVTPGIAVDISHIPTSVNAIGYAGEDPSVALKDPSVALKDTNLVIITAGIARKP 90          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDHM_CHLRE (Malate dehydrogenase, mitochondrial OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.397e-19
Identity = 52/89 (58.43%), Postives = 62/89 (69.66%), Query Frame = 1
Query:  196 AKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEP 462
            A     G KVA+LGAAGGIGQPL+MLMK+N  VS L LYD+  TPGV AD+SH++T A V+GF  +  L  AL G DLVIIPA    +P
Sbjct:   56 APSSGKGRKVAVLGAAGGIGQPLSMLMKMNSQVSSLSLYDIAGTPGVAADVSHINTKAQVKGF-DKDGLAEALRGCDLVIIPAGVPRKP 143          

HSP 2 Score: 69.3218 bits (168), Expect = 4.407e-11
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 2
Query:  416 QGWTLSLSLPGVPRNPGMTREDLFKINAGMAGTLCEGIAKCGPNATVNLISNPGNSKVPYGRKGFQKSGDFMNQKTPGGVQWVQGEKPHTFRGENFG 706
            +G  L +   GVPR PGMTR+DLFKINAG+   L   + +  P A +N+ISNP NS VP   +  +K G +  +K   GV  +   +  TF  E  G
Sbjct:  128 RGCDLVIIPAGVPRKPGMTRDDLFKINAGIVRDLVTAVGQHCPGAVLNIISNPVNSTVPIAAEQLKKMGVYDKRKVM-GVTTLDVVRAKTFYAEKNG 223          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDHC_YEAST (Malate dehydrogenase, cytoplasmic OS=Saccharomyces cerevisiae GN=MDH2 PE=1 SV=2)

HSP 1 Score: 58.9214 bits (141), Expect = 1.069e-18
Identity = 40/94 (42.55%), Postives = 52/94 (55.32%), Query Frame = 1
Query:  220 KVAILGAAGGIGQPLAMLMKI---------NPLVSVLHL--YDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEP 462
            K+AILGAAGGIGQ L++L+K          N  V+ +HL  YDV      GVTAD+SH+DT   V        +EN L    +V+IPA    +P
Sbjct:   15 KIAILGAAGGIGQSLSLLLKAQLQYQLKESNRSVTHIHLALYDVNQEAINGVTADLSHIDTPISVSSHSPAGGIENCLHNASIVVIPAGVPRKP 108          

HSP 2 Score: 53.5286 bits (127), Expect = 1.069e-18
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 2
Query:  446 GVPRNPGMTREDLFKINAGMAGTLCEGIAKCG--PNATVNLISNPGNSKVP 592
            GVPR PGMTR+DLF +NAG+   L + IA+C       V +ISNP NS VP
Sbjct:  103 GVPRKPGMTRDDLFNVNAGIISQLGDSIAECCDLSKVFVLVISNPVNSLVP 153          
The following BLAST results are available for this feature:
BLAST of EY665274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
MDHM_SCHPO5.192e-2654.22Malate dehydrogenase, mitochondrial OS=Schizosacch... [more]
MDHM_SCHMA3.607e-2449.33Malate dehydrogenase, mitochondrial (Fragment) OS=... [more]
MDHM1_ARATH3.253e-2251.85Malate dehydrogenase 1, mitochondrial OS=Arabidops... [more]
MDHM_BRANA4.249e-2259.55Malate dehydrogenase, mitochondrial OS=Brassica na... [more]
MDHM2_ARATH2.754e-2161.73Malate dehydrogenase 2, mitochondrial OS=Arabidops... [more]
MDHP_ARATH3.045e-2042.38Malate dehydrogenase, chloroplastic OS=Arabidopsis... [more]
MDHM_CAEEL1.511e-1938.82Probable malate dehydrogenase, mitochondrial OS=Ca... [more]
MDH_HAEDU1.706e-1941.18Malate dehydrogenase OS=Haemophilus ducreyi GN=mdh... [more]
MDHM_CHLRE4.397e-1958.43Malate dehydrogenase, mitochondrial OS=Chlamydomon... [more]
MDHC_YEAST1.069e-1842.55Malate dehydrogenase, cytoplasmic OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-A09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665274 ID=EY665274; Name=EY665274; organism=Citrus sinensis; type=EST; length=1084bp
ATTTTTATATTCTAATTCAATCCATTCATTCTTTGCATGTATCATTATTG
ATCACATTCACACCACCATACTTCAACAAAGAAAATGGAGTTTAGCTCAG
AGGCTAATCAGCGCATTGCTAGAATCTCTGCTCATCTTTACCCTCCAAAT
CTCCAGATGGAGGAGAATTCTTGCTTGAGGCAAGCTAAATGCCGGGCAAA
AGGCGGGGCAGCTGGATTCAAAGTAGCCATCTTGGGTGCTGCTGGAGGCA
TTGGTCAACCCCTTGCAATGCTAATGAAGATAAACCCCCTGGTCTCAGTC
CTTCACCTCTATGATGTTGTCAATACCCCTGGTGTCACTGCTGATATTAG
CCATATGGACACCGGCGCTGTGGTACGGGGTTTCCTAGGCCAGCCACAGC
TTGAGAATGCTCTCACAGGGGTGGACCTTGTCATTATCCCTGCCCGGCGT
TCCGAGGAACCCTGGAATGACCAGGGAAGATCTTTTCAAAATCAATGCTG
GAATGGCCGGGACACTCTGTGAAGGGATCGCAAAGTGTGGCCCCAATGCG
ACTGTCAATTTGATCAGTAATCCAGGGAACTCCAAAGTTCCTTATGGCCG
CAAAGGTTTTCAAAAAAGCGGGGACTTTATGAACCAAAAAACTCCTGGGG
GAGTACAATGGGTCCAAGGCGAAAAACCCCACACATTTCGGGGGGAAAAT
TTTGGGGAACTTGGTTCCCTAGGGATGTTGGGGGTCCCGGTTTGGGGGGG
GCCATGGGGGGGAAAAAAATTTTTGGCCCCTTTTTTAAAAGAGGGTAAAA
ACCCTCCTTTGAAATTTTCTTTAAAAAAAAAAAAAAGGAAAAAACACGGA
GAAAAACCCCCCAACAAAAAAAGGGGGGGGGAAAAAAAAAAATTGTGTGG
GAAGAGGGAAAAAAAGGGGGGGGGGGGGGGGGGGGTCTGCCCCGGACACA
CCCCTTACCCCCAAATGGGGGAATTATAATGAAGGAGCCGCGACGTGGTT
TATTAAATAAATTTTTTTTTTTTGGGAAGGAGGAGAGAAACGAATGAGTA
GAGCCTCTGCCAGCGCTACCCCCTCCTCCCCTCC
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