CV884406

Overview
NameCV884406
Unique NameCV884406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7063 contig Csv1_Contig7063:50..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884406 vs. ExPASy Swiss-Prot
Match: GSTX1_SOLTU (Probable glutathione S-transferase OS=Solanum tuberosum GN=PRP1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.137e-36
Identity = 90/211 (42.65%), Postives = 127/211 (60.19%), Query Frame = 2
Query:   20 SDVKVLGAWPSPFVMRARIALKIKSVEYEYLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWXXXXXXXXXXDPYDRAVARFWAAYVDEKLFPALKSIGSGDGAEAKKAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQIGFLDIAFGCYLGWVRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKL 652
            ++VK+LG   SPF  R   ALKIK V+YE++EE+L +KS LLL+SNP+HKKIPVLIHN K +CES++I+EY+DEA+          DPYDRA+ARFWA YV++K     KS  S  G E +KA  E+  E L +L++ F    K K  F G + GF DI       ++ + E+++ + L    K P    W + +C     ++  P  D+L
Sbjct:    2 AEVKLLGLRYSPFSHRVEWALKIKGVKYEFIEEDLQNKSPLLLQSNPIHKKIPVLIHNGKCICESMVILEYIDEAF--EGPSILPKDPYDRALARFWAKYVEDKGAAVWKSFFS-KGEEQEKAK-EEAYEMLKILDNEF----KDKKCFVGDKFGFADIVANGAALYLGILEEVSGIVLATSEKFPNFCAWRDEYCTQN--EEYFPSRDEL 202          
BLAST of CV884406 vs. ExPASy Swiss-Prot
Match: GSTXA_ARATH (Glutathione S-transferase 103-1A OS=Arabidopsis thaliana GN=103-1A PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.456e-34
Identity = 85/228 (37.28%), Postives = 125/228 (54.82%), Query Frame = 2
Query:   17 KSDVKVLGAWPSPFVMRARIALKIKSVEYEYLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWXXXXXXXXXXDPYDRAVARFWAAYVDEKLF-PALKSIGSGDGAEAKKAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQIGFLDIAFGCYL------GWVRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAEFAKVLAK 679
            K +VK+LG W SPF  R  +ALK+K + YEY+EE L +KS LLL  NP+HKK+PVL+HN K + ES +I+EY+DE W          DPY+R+ ARF+A  VDE++      S+   D  + ++   EQ+ E ++ LE   V    GK +FGG  +GFLD   G  +      GW  +      ++++ E K P   +W         VKD +P  ++  E    +A+
Sbjct:    4 KEEVKLLGIWASPFSRRVEMALKLKGIPYEYVEEILENKSPLLLALNPIHKKVPVLVHNGKTILESHVILEYIDETW--PQNPILPQDPYERSKARFFAKLVDEQIMNVGFISMARAD-EKGREVLAEQVRELIMYLEKELV----GKDYFGGKTVGFLDFVAGSLIPFCLERGWEGI-----GLEVITEEKFPEFKRWVRNLEKVEIVKDCVPPREEHVEHMNYMAE 219          
BLAST of CV884406 vs. ExPASy Swiss-Prot
Match: GSTX1_NICPL (Probable glutathione S-transferase MSR-1 OS=Nicotiana plumbaginifolia GN=MSR-1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.693e-33
Identity = 85/217 (39.17%), Postives = 118/217 (54.38%), Query Frame = 2
Query:   11 MAKSDVKVLGAWPSPFVMRARIALKIKSVEYEYLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWXXXXXXXXXXDPYDRAVARFWAAYVDEKLFPALKSIGSGDGAEAKKAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQIGFLDIAFGCYLGWVRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAEF 661
            M  ++V +L    S F MR RIAL +K ++YE  EENL  KS LLL+ NPVHKKIP+LIHN KP+CESL I+EY+DE W          DPY R+ ARFWA Y+D K++   + + SG G E ++ A ++ IE    LE         K +FGG  +GF+D+A   +  W    E      +  E +   L  W +    +  V   +P   K+ +F
Sbjct:    1 MESNNVVLLDFSGSSFGMRLRIALALKGIKYEAKEENLSDKSPLLLEMNPVHKKIPILIHNGKPICESLNILEYIDEVW-HEKCPLLPSDPYQRSQARFWANYIDNKIYSTGRRVWSGKG-EDQEEAKKEFIEIFKTLEGEL----GNKTYFGGDNLGFVDVALVPFTSWFYSYETCANFSI--EAECRKLVVW-QNCMENERVSKSLPHPHKIYDF 208          
BLAST of CV884406 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSI (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. indica GN=GSTU1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.023e-31
Identity = 86/230 (37.39%), Postives = 125/230 (54.35%), Query Frame = 2
Query:   17 KSDVKVLGAWPSPFVMRARIALKIKSVEYEYLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWXXXXXXXXXXD------PYDRAVARFWAAYVDEKLFPALKSIGSGDGAEAKKAAIEQLIEGLVLLEDAFVKCSKGKPFF---GGSQIGFLDIAFGCYLGWVRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAEFAKVLAK 679
            + ++ +L  W SPF  R RIA+  K +E+EY EE+LG+KS+LLL+SNPVH+KIPVL+H  +PV ESL+I++Y+D+A+          +       Y RA ARFWA YVD KL+     +    G E + AA  ++ E L  LE         + FF   GG ++GF+D+A   +  W    E+     +  E   P L  WA R     +V   +P  +K+ +F  VL K
Sbjct:    4 EKELVLLDFWVSPFGQRCRIAMAEKGLEFEYREEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGTPHLLSPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLKG-EPQAAAGREMAEILRTLEAEL----GDREFFGGGGGGRLGFVDVALVPFTAWFYSYERCGGFSV--EEVAPRLAAWARRCGRIDSVAKHLPSPEKVYDFVGVLKK 226          
BLAST of CV884406 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSJ (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. japonica GN=GSTU1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.866e-31
Identity = 86/230 (37.39%), Postives = 125/230 (54.35%), Query Frame = 2
Query:   17 KSDVKVLGAWPSPFVMRARIALKIKSVEYEYLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWXXXXXXXXXXD------PYDRAVARFWAAYVDEKLFPALKSIGSGDGAEAKKAAIEQLIEGLVLLEDAFVKCSKGKPFF---GGSQIGFLDIAFGCYLGWVRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAEFAKVLAK 679
            + ++ +L  W SPF  R RIA+  K +E+EY EE+LG+KS+LLL+SNPVH+KIPVL+H  +PV ESL+I++Y+D+A+          +       Y RA ARFWA YVD KL+     +    G E + AA  ++ E L  LE         + FF   GG ++GF+D+A   +  W    E+     +  E   P L  WA R     +V   +P  +K+ +F  VL K
Sbjct:    4 EKELVLLDFWVSPFGQRCRIAMAEKGLEFEYREEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGTPHLLPPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLKG-EPQAAAGREMAEILRTLEAEL----GDREFFGGGGGGRLGFVDVALVPFTAWFYSYERCGGFSV--EEVAPRLAAWARRCGRIDSVVKHLPSPEKVYDFVGVLKK 226          
The following BLAST results are available for this feature:
BLAST of CV884406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GSTX1_SOLTU2.137e-3642.65Probable glutathione S-transferase OS=Solanum tube... [more]
GSTXA_ARATH4.456e-3437.28Glutathione S-transferase 103-1A OS=Arabidopsis th... [more]
GSTX1_NICPL1.693e-3339.17Probable glutathione S-transferase MSR-1 OS=Nicoti... [more]
GSTU1_ORYSI6.023e-3137.39Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
GSTU1_ORYSJ7.866e-3137.39Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884406 ID=CV884406; Name=CV884406; organism=Citrus sinensis; type=EST; length=732bp
AAAAAAGAAAATGGCAAAAAGCGACGTGAAGGTTTTGGGTGCGTGGCCAA
GCCCATTTGTGATGAGGGCAAGAATCGCACTTAAGATCAAGTCTGTGGAG
TATGAGTATCTGGAGGAGAATTTGGGATCCAAAAGCGAGCTTCTGCTTAA
ATCAAACCCTGTTCACAAGAAAATCCCAGTTCTGATTCACAATGATAAGC
CTGTTTGCGAATCTCTCATCATTGTCGAGTACGTGGATGAGGCTTGGTCC
TCTTCAGGTCCCTCTATTATTCCTTCTGATCCTTATGACCGTGCCGTTGC
TCGTTTCTGGGCCGCTTATGTTGATGAGAAGTTGTTCCCTGCCTTGAAAA
GCATTGGTAGTGGAGATGGAGCGGAAGCTAAGAAAGCTGCGATTGAGCAA
TTGATTGAAGGCTTGGTTTTGCTGGAGGATGCTTTTGTTAAGTGTAGCAA
AGGGAAGCCTTTCTTTGGTGGAAGCCAAATTGGGTTTCTTGACATTGCAT
TTGGTTGCTACTTGGGATGGGTGAGAGTGACAGAGAAAATGAATGAGGTG
AAGCTCCTTGATGAAGTCAAAACTCCTGGACTGTTCAAATGGGCTGAGAG
ATTCTGTGCTGATGCCGCTGTCAAAGATGTTATGCCTGAGACTGATAAGC
TTGCAGAGTTTGCTAAGGTTCTTGCCAAACTCAGAGCTTCTGGCAAATGG
AATTAAGAAGCTTAATTCTGTGCCTGGAGGGG
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