CV884405

Overview
NameCV884405
Unique NameCV884405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3337 contig Csv1_Contig3337:514..1404. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYHM_MOUSE (Probable histidyl-tRNA synthetase, mitochondrial OS=Mus musculus GN=Hars2 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.821e-40
Identity = 93/215 (43.26%), Postives = 137/215 (63.72%), Query Frame = -3
Query:  284 SSAKLALD---DLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIF--------KGATQVGSIAAGGRYDNLIGMFGTK--QVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE--YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 880
            S ++LAL    DL++ F+ L      DK+  DLSLARGLDYYTGVI+EA+         K    VGS+AAGGRYDNL+  F  K   VP VG+S+G+ER+F ++EQ  K   + +R TETQV V       L    ++++ELW+A +KAE  Y  + K++  +    ++ IP MVI+GE+E NEG++KL+++ + +E  I+R + V EIQ+RL++
Sbjct:  290 SQSQLALQGLGDLKLLFEYLRLFGIADKISLDLSLARGLDYYTGVIYEAVLLESPAQAGKETLSVGSVAAGGRYDNLVAQFDPKGHHVPCVGLSIGVERIFYLVEQKMKMSGEKVRTTETQVFVATPQKNFLQERLKIIAELWDAGIKAEMLYKNNPKLLTQLHYCEKADIPLMVIIGEQERNEGVIKLRSVASREEVTINRESLVAEIQKRLSE 504          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYHC_MESAU (Histidyl-tRNA synthetase, cytoplasmic OS=Mesocricetus auratus GN=HARS PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.503e-35
Identity = 88/213 (41.31%), Postives = 130/213 (61.03%), Query Frame = -3
Query:  284 ENSSAKLALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIF----KGATQ---VGSIAAGGRYDNLIGMFGTK--QVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLA-AELVSELWNAKVKAEYMVHK--KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 886
            +N  A   L DL++ F+ L      DK+ FDLSLARGLDYYTGVI+ A+      GA +    G      RYD L+GMF  K  +VP VG+S+G+ER+F+I+EQ  +   + +R TETQVLV     KL     +   +LW+A +KAE +  K  K++  +    E+ IP + I+GE+EL +G++KL+++ + +E  + R + VEEI+RR NQ
Sbjct:  291 QNKQAVEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYVAVLLQMPTGAGEEPWCGQCGCWRRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEALEEKVRTTETQVLVASAQKKLAGGETKACLQLWDAGIKAELLYKKNPKLLNQLQYCEETGIPLVAIIGEQELKDGVIKLRSVASREEVDVRREDLVEEIRRRTNQ 503          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SCHPO (Histidyl-tRNA synthetase OS=Schizosaccharomyces pombe GN=hts1 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.964e-28
Identity = 82/238 (34.45%), Postives = 126/238 (52.94%), Query Frame = -3
Query:  290 NSSAKLALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQ-------------------------VGSIAAGGRYDNLIGMFGTK---QVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK------LPLAAELVSELWNAKVKAE--YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI----DTTQEEVISRSNFVEEIQRRL 883
            NSSA  A +D+ + F  LE    +D+  FD+SLARGLDYYTG+I+EA+ + +                           VGSIAAGGRYDNL+GMF  K   ++P VG+SLG+ER+F+I+    K  ++ IRA +  V V   G        L     +  +LW   +KAE  Y V  K  +  D A +  +P+ VI+G+ E  +G V++K +    ++ + +++ R   V  +++ L
Sbjct:  300 NSSAVAAFNDMRLLFDYLEAFGVLDRFSFDMSLARGLDYYTGIIYEAVTEASAPKIKSSAEKKKSADPEADRSNDDSIGVGSIAAGGRYDNLVGMFAAKKNAKIPCVGISLGLERIFSILR--SKIPDEDIRANDVDVFVMAFGGGKEWTGFLKERMSVCKDLWANGIKAEFLYKVKPKPRQQFDAADKFDVPFAVILGQDEFAKGSVRIKQMGLKENSDEGQLVPREEMVSVLKKLL 535          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYHC_ANTLO (Probable histidyl-tRNA synthetase, cytoplasmic OS=Antonospora locustae PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.300e-27
Identity = 76/180 (42.22%), Postives = 104/180 (57.78%), Query Frame = -3
Query:  362 SSAKLALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLI-GMFGTK---QVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVHKK--VMKLIDRARESKIPWMVIVGERELNEGIVKL 880
            S  K  +DDL + F+ L      D+ V DLSLARGLDYYTGVIFEA       VGS+A GGRYDNL+  + G K    VP VG SLG+ R+ ++M ++ +      R TET+V VG  G   L     ++S LW A V AE    +K     L++  R++ IP+ ++VGE+E+ E   +L
Sbjct:  237 SDGKKGIDDLALLFKYLGIYGVGDRAVVDLSLARGLDYYTGVIFEAALVDFKDVGSVAGGGRYDNLVSSVLGKKSEWSVPCVGFSLGVTRILSVMLKVDRR-----RTTETEVFVGSSGGLLLEERMGVLSRLWRAGVAAETFYTRKYGYASLMEHVRKTDIPFFLLVGEKEIAENRFRL 411          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_CAEEL (Histidyl-tRNA synthetase OS=Caenorhabditis elegans GN=hrs-1 PE=2 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 9.535e-27
Identity = 80/219 (36.53%), Postives = 118/219 (53.88%), Query Frame = -3
Query:  290 ENSSAKLALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQ----------------VGSIAAGGRYDNLIGMFGTK-QVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPL-AAELVSELWNAKVKAEYMV--HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 886
            +N   K   ++L++  + L     +  V ++ SLARGLDYYTG I+EA+   A +                VGS+AAGGRYD L+ MF +K  VP  GVS GIER+F IME  QK     IR T+T+V V      L     +LV  L +A +K E  +  + K++     A E +IP  +++GE+EL +G+VKL+N+ T  E+ I     +  ++  L
Sbjct:  304 QNDKFKKGAEELKVLIEYLNVDG-VTTVRYEPSLARGLDYYTGAIYEAVAPKALEGTAVENSEDTAGQPVGVGSVAAGGRYDGLVKMFDSKANVPCCGVSFGIERLFAIMEARQKVA---IRTTQTEVYVASAQKNLVRDRKKLVKMLRSAGIKTEMALKANPKLLTQFQYAEERRIPLAIVIGEQELKDGVVKLRNVVTRDEQTIKLDQLITAVRDTL 518          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_YEAST (Histidyl-tRNA synthetase, mitochondrial OS=Saccharomyces cerevisiae GN=HTS1 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 6.180e-26
Identity = 80/240 (33.33%), Postives = 122/240 (50.83%), Query Frame = -3
Query:  284 NSSAKLALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQ----------------------VGSIAAGGRYDNLIGMFG------TKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLG------DKLPLAAELVSELWNAKVKAEYMVHKKV--MKLIDRARESKIPWMVIVGERELNEGIVKLKNID----TTQEEVISRSNFVEEIQRRLNQ 883
            N  AK  LDD+    +  E       + FDLSLARGLDYYTG+I+E +   +                        VGSIAAGGRYDNL+ MF       + Q+P VG+S G+ER+F++++Q +   +  I+ T TQV V   G        LP   ++  +LW+A ++AEY+   K    K  D A ++     VI+G+ E  EG +++K +         E++S ++ V  +Q +L+Q
Sbjct:  292 NEKAKQGLDDIATLMKYTEAFDIDSFISFDLSLARGLDYYTGLIYEVVTSASAPPENASELKKKAKSAEDASEFVGVGSIAAGGRYDNLVNMFSEASGKKSTQIPCVGISFGVERIFSLIKQ-RINSSTTIKPTATQVFVMAFGGGKDWTGYLPERMKVTKQLWDAGIEAEYVYKAKANPRKQFDAAEKAGCHIAVILGKEEYLEGKLRVKRLGQEFADDDGELVSAADIVPIVQEKLSQ 530          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_BACTN (Histidyl-tRNA synthetase OS=Bacteroides thetaiotaomicron GN=hisS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.924e-25
Identity = 67/189 (35.45%), Postives = 111/189 (58.73%), Query Frame = -3
Query:  302 LDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEI 862
            +++ E     LE     +++  DL+LARGL+YYTG IFE +     Q+GSI  GGRYDNL G+FG   V  VG+S G +R+F ++ Q++    + +  TE  ++    GDK    +  +++++  A ++AE +    K+ K +  A    +P++ IVGE E+NEG   LKN++T ++ ++S    VEE+
Sbjct:  267 VEESEFILGTLETMGLKNEIELDLTLARGLNYYTGAIFE-VKALDVQIGSITGGGRYDNLTGVFGMAGVSGVGISFGADRIFDVLNQLELYPKEAVNGTE--LMFVNFGDKEAAFSMSMLAKVRAAGIRAEIFPDAAKMKKQMSYANAKSVPFVAIVGENEMNEGKAMLKNMETGEQNLVS----VEEL 448          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_BACV8 (Histidyl-tRNA synthetase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=hisS PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.597e-24
Identity = 69/191 (36.13%), Postives = 111/191 (58.12%), Query Frame = -3
Query:  326 LENSSAKL-ALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVIS 889
            L  S A L  +++ E   + +       +V  DL+LARGL+YYTG IFE +     Q+GSI+ GGRYDNL G+FG   +  VG+S G +R+F ++ Q+     + +  TE  +L    GDK       +++++  A V+AE Y    K+ K +  A + +IP++ IVGE E+NEG + LKN+ T ++ +++
Sbjct:  257 LATSEAGLKGVEESEFILKTVSALGVKSEVELDLTLARGLNYYTGAIFE-VKALDVQIGSISGGGRYDNLTGVFGMDGMSGVGISFGADRIFDVLNQLDLYPKEAVNGTE--LLFVNFGDKEAAYCLPILTKVREAGVRAEIYPDASKMKKQMGYANDKQIPFVAIVGENEMNEGKLTLKNMTTGEQSLVT 444          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_BACFR (Histidyl-tRNA synthetase OS=Bacteroides fragilis GN=hisS PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.784e-24
Identity = 68/202 (33.66%), Postives = 115/202 (56.93%), Query Frame = -3
Query:  311 SSAKLALDDLEIFFQALEKSKCI----------DKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFV 880
            ++ K  L D E   + +E+S+ I          +++  DL+LARGL+YYTG IFE +     Q+GSI  GGRYDNL G+FG   V  VG+S G +R+F ++ Q++    + +    TQ+L    G+K    +  ++S+   A ++AE +    K+ K +  A    IP++ IVGE E+NEG   LKN+++ ++++++    +
Sbjct:  251 ATLKTVLSDSETGLKGVEESEFILNTLQTMGLKNEIELDLTLARGLNYYTGAIFE-VKALDVQIGSITGGGRYDNLTGVFGMAGVSGVGISFGADRIFDVLNQLELYPKEAVNG--TQLLFINFGEKEAAFSMGILSKARAAGIRAEIFPDAAKMKKQMSYANVKNIPFVAIVGENEMNEGKAMLKNMESGEQQLVTAEELI 449          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_BACFN (Histidyl-tRNA synthetase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=hisS PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.784e-24
Identity = 68/202 (33.66%), Postives = 115/202 (56.93%), Query Frame = -3
Query:  311 SSAKLALDDLEIFFQALEKSKCI----------DKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFV 880
            ++ K  L D E   + +E+S+ I          +++  DL+LARGL+YYTG IFE +     Q+GSI  GGRYDNL G+FG   V  VG+S G +R+F ++ Q++    + +    TQ+L    G+K    +  ++S+   A ++AE +    K+ K +  A    IP++ IVGE E+NEG   LKN+++ ++++++    +
Sbjct:  251 ATLKTVLSDSETGLKGVEESEFILNTLQTMGLKNEIELDLTLARGLNYYTGAIFE-VKALDVQIGSITGGGRYDNLTGVFGMAGVSGVGISFGADRIFDVLNQLELYPKEAVNG--TQLLFINFGEKEAAFSMGILSKARAAGIRAEIFPDAAKMKKQMSYANVKNIPFVAIVGENEMNEGKAMLKNMESGEQQLVTAEELI 449          
The following BLAST results are available for this feature:
BLAST of CV884405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
SYHM_MOUSE9.821e-4043.26Probable histidyl-tRNA synthetase, mitochondrial O... [more]
SYHC_MESAU2.503e-3541.31Histidyl-tRNA synthetase, cytoplasmic OS=Mesocrice... [more]
SYH_SCHPO2.964e-2834.45Histidyl-tRNA synthetase OS=Schizosaccharomyces po... [more]
SYHC_ANTLO7.300e-2742.22Probable histidyl-tRNA synthetase, cytoplasmic OS=... [more]
SYH_CAEEL9.535e-2736.53Histidyl-tRNA synthetase OS=Caenorhabditis elegans... [more]
SYH_YEAST6.180e-2633.33Histidyl-tRNA synthetase, mitochondrial OS=Sacchar... [more]
SYH_BACTN8.924e-2535.45Histidyl-tRNA synthetase OS=Bacteroides thetaiotao... [more]
SYH_BACV82.597e-2436.13Histidyl-tRNA synthetase OS=Bacteroides vulgatus (... [more]
SYH_BACFR5.784e-2433.66Histidyl-tRNA synthetase OS=Bacteroides fragilis G... [more]
SYH_BACFN5.784e-2433.66Histidyl-tRNA synthetase OS=Bacteroides fragilis (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884405 ID=CV884405; Name=CV884405; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTCATCAAAATTCTTTAATTAAAATTCTCGAATCT
ATAAAATGACAACCATTATAATATCGGACAATTTCTACAGGGGAAAATGG
GAGAAAAAAACAAACAACAAATCATCTTCAATTCAATTTTTTACACGTTC
GTTACCAATTTGTCGAGATGCAGATATCAGACATGCCGTTGCAGCTAATG
ACATGCAGATTAATTGATATTCCAAGCGTTGTGTAACGTAGCAGAATGGC
TTAAAGTTGTGCTTCAACTAAATATTACGTTCATTGGTTCAATCGTCTTT
GAATTTCCTCAACAAAGTTACTTCTGGAAATAACCTCCTCTTGAGTGGTG
TCAATGTTCTTTAATTTTACTATTCCTTCATTCAGCTCGCGCTCACCCAC
AATTACCATCCAAGGGATTTTCGACTCCCTGGCACGATCAATGAGCTTCA
TCACTTTCTTATGGACCATGTATTCTGCTTTCACCTTGGCATTCCACAGC
TCGCTGACCAGTTCAGCAGCTAGAGGAAGTTTATCCCCGAGCAAGCCCAC
AAGTACTTGCGTCTCGGTGGCTCGAATTATCTGGTTCCTTTCTTTTTGAA
TCTGCTCCATTATAGTAAAGACTCGCTCAATTCCAAGACTGACACCAACT
GCAGGAACCTGCTTTGTACCAAACATTCCGATGAGGTTGTCATAACGTCC
ACCAGCTGCAATTGAACCAACCTGTGTGGCCCCTTTGAAAATGGCTTCAA
ATATGACACCAGTGTAATAGTCAAGACCTCTTGCAAGACTCAAATCAAAA
ACCACTTTATCAATGCACTTTGACTTTTCTAGAGCTTGAAAAAAAATTTC
AAGGTCATCCAATGCAAGTTTAGCTGAACTGTTTTCTAAAA
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