CV884405

Overview
NameCV884405
Unique NameCV884405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SHEPC (Histidyl-tRNA synthetase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=hisS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.203e-15
Identity = 57/171 (33.33%), Postives = 93/171 (54.39%), Query Frame = -3
Query:  296 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLV---GLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI--DTTQEEVI--SRSNFVEEIQR 787
            L RGLDYY   +FE +       G++ AGGRYD L+   G K  PAVG ++G+ER+  ++E +   ++ I  A +  V       L + + +A EL S L + KV + +     V K + RA +S     +++GE EL EG+V +K++  D  Q++V   + S F+ E+ +
Sbjct:  257 LVRGLDYYNRTVFEWVTNSLGSQGTVLAGGRYDGLVAQLGGKDTPAVGFAMGLERIVLLLETLGLTQD-IPAAVDVYVTAMGENCLVEAIKVAQELRSALPHLKVMS-HCGGGNVKKQMKRADKSGASVALLIGEEELAEGMVTVKHLRNDNEQQQVARNALSAFLAELTK 425          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_NANEQ (Histidyl-tRNA synthetase OS=Nanoarchaeum equitans GN=hisS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.203e-15
Identity = 55/190 (28.95%), Postives = 101/190 (53.16%), Query Frame = -3
Query:  299 FFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAE--------YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 844
            F++ ++  +  +K+  D+ LARG DYYTG+++E   +G  +  ++  GGRYDNLIG+F  +++PAVG S+GI  +  +   ++K    + + T TQ+ V        +  E+  E W    K           ++ +   K ++   E  I ++VIVG+++L   +V  ++  T + + I   N +EEI+
Sbjct:  224 FWEIIDLVEKKNKIKIDIKLARGFDYYTGMVYEVWIEGFNR--ALGGGGRYDNLIGIFSKEKIPAVGGSIGINPLIDV--GLEKGIFNLNKKTYTQIAV--------IYIEVFKEAWRIANKLRDLGLNVYIDLLRRDFKKQMEYVIEKDIRYLVIVGKKDLANNLVTFQDRLTRERKKIPIEN-LEEIK 400          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_MOOTA (Histidyl-tRNA synthetase OS=Moorella thermoacetica (strain ATCC 39073) GN=hisS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.203e-15
Identity = 67/186 (36.02%), Postives = 94/186 (50.54%), Query Frame = -3
Query:  332 SAKLALDDLEIFFQALEKSKCID-KVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAA-ELVSELWNAKVKAEYMVHKKVMK-LIDRARESKIPWMVIVGERELNEGIVKLKNIDT-TQEEV 877
            +A L  D    F +  E  K +  + + D  L RGLDYYT   FE + KG     SI  GGRYD L+   G KQVP +G  LG+ERV   +E IQ +        +  VLV   G  + LAA  L++ L  A ++A+    ++ +K  +  A        VI+GE EL  G V ++ +D  +QEEV
Sbjct:  224 TASLCPDCAGHFHRVQEYLKALGIEFILDEHLVRGLDYYTKTAFEIMVKGIGAQSSIGGGGRYDGLVAALGGKQVPGIGFGLGLERVLLALE-IQGQEPPPEGGVD--VLVVTAGTGVDLAAFRLLAGLRAAGIRADKDYLERSLKGQMKYANRYPARMAVILGEEELARGRVSVRRLDAGSQEEV 406          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_LEPBP (Histidyl-tRNA synthetase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=hisS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.877e-15
Identity = 56/188 (29.79%), Postives = 92/188 (48.94%), Query Frame = -3
Query:  284 FQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 841
            F+ ++     D + FD S+ RG DYYTG IFE          S+  GGRYDNLIG+F  +++  +G  LG     T+   +         A++T V + LL D           EL   K+ AE  +V +K+ K +  A +    W+++ GE E+    V LK++ +  +   S S  +++I+  L++
Sbjct:  253 FEDIKTIGLSDIIHFDPSVVRGFDYYTGFIFEIFDTSPQNKRSLYGGGRYDNLIGLFSNEELTGIGFGLG---DVTLQNFLTAHNLLPNFASDTTVFIPLLDDSSFAENHNFAKELRKEKISAEVSLVSQKMGKQLSYAEKKGYRWILLRGEDEIKTNTVTLKDMASRNQFTFSFSEALQKIKEELSK 437          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_LEPBA (Histidyl-tRNA synthetase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=hisS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.877e-15
Identity = 56/188 (29.79%), Postives = 92/188 (48.94%), Query Frame = -3
Query:  284 FQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 841
            F+ ++     D + FD S+ RG DYYTG IFE          S+  GGRYDNLIG+F  +++  +G  LG     T+   +         A++T V + LL D           EL   K+ AE  +V +K+ K +  A +    W+++ GE E+    V LK++ +  +   S S  +++I+  L++
Sbjct:  253 FEDIKTIGLSDIIHFDPSVVRGFDYYTGFIFEIFDTSPQNKRSLYGGGRYDNLIGLFSNEELTGIGFGLG---DVTLQNFLTAHNLLPNFASDTTVFIPLLDDSSFAENHNFAKELRKEKISAEVSLVSQKMGKQLSYAEKKGYRWILLRGEDEIKTNTVTLKDMASRNQFTFSFSEALQKIKEELSK 437          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_ANATD (Histidyl-tRNA synthetase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=hisS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.877e-15
Identity = 49/173 (28.32%), Postives = 89/173 (51.45%), Query Frame = -3
Query:  284 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQ--IQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 796
            D  + RGLDYYT  +FE +   + +  +I  GGRYDNLI   G   +  +G ++G+ER+  ++EQ  +   R+Q+ R     +    +     +A  L  E  +  V+      K  MK  D+       + +I+G+ E+ +G+ K++N+ T+ EE++   N  E ++ +L +
Sbjct:  252 DPFIVRGLDYYTKTVFEIVATVSDKELAICGGGRYDNLIEQIGGPSIAGIGFAIGVERLLMLLEQNGLLPARSQVPRVFVATIGENGIKKAFEIARMLRFEGISTVVEEMGRSLKSQMKYADKI---GCEFSIIIGDDEIEKGVCKVRNMKTSSEEIVEIENICEYLKEKLQK 421          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH1_BACCR (Histidyl-tRNA synthetase 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=hisS-1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.877e-15
Identity = 52/162 (32.10%), Postives = 88/162 (54.32%), Query Frame = -3
Query:  338 DKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMF--GTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPL--AAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQE 811
            +  +F+  LARGL  YTG ++E   K  +   SI +GGRYDN+IG F       P VG+S G++ ++T + Q      + I +T   V +  LG +L     A+ +    + KV+ E +  +K+ + ++ A +  IP+++I+GE EL+   V L+N+    E
Sbjct:  260 ENTIFNPFLARGLTMYTGTVYEIFLKDRSITSSIGSGGRYDNIIGAFRGDNMNYPTVGISFGLDVIYTALSQ-----KETISST-ADVFIIPLGTELQCLQIAQQLRSTTSLKVELE-LAGRKLKRALNYANKENIPYVLIIGEDELSTNTVVLRNMKEGSE 414          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH1_BACC1 (Histidyl-tRNA synthetase 1 OS=Bacillus cereus (strain ATCC 10987) GN=hisS1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.877e-15
Identity = 53/169 (31.36%), Postives = 91/169 (53.85%), Query Frame = -3
Query:  317 DKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMF--GTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPL--AAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSN 811
            +  +F+  LARGL  YTG ++E   K  +   SI +GGRYDN+IG F       P VG+S G++ ++T + Q      + I +T   V +  LG +L     A+ +    + KV+ E +  +K+ + ++ A +  IP+++I+GE EL+   V L+N+    E  +  S+
Sbjct:  259 ENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAFRGDNMNYPTVGISFGLDVIYTALSQ-----KETISST-ADVFIIPLGTELQCLQIAQQLRSTTSLKVELE-LAGRKLKRALNYANKENIPYVLIIGEDELSTETVVLRNMKEGSEVKVPLSS 420          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_PYRCJ (Histidyl-tRNA synthetase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=hisS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.758e-15
Identity = 50/171 (29.24%), Postives = 101/171 (59.06%), Query Frame = -3
Query:  338 FFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTI--MEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQE 844
            F + LE +  +++++FDLS+ RGLDYYTGV+FEA F G  ++ ++  GGRYD+L+ ++   + PA+G ++G+ER+     ++ ++K  +  I   +           + +A EL  + ++A V+   +  K +    +   +    ++VI+G++EL +G+VK++++   +E
Sbjct:  248 FVKYLEAAVGLERLIFDLSIVRGLDYYTGVVFEA-FAGEYKL-AVGGGGRYDDLLQLYSGVKTPALGFAIGVERLMEAVGLQAVEKPLDYYIYIFDESA----YQTAIYIARELRRKGYSAVVE---LGDKGLKDAFEYVLKIGTRFLVILGKKELEKGVVKVRDLQKREE 409          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_JANSC (Histidyl-tRNA synthetase OS=Jannaschia sp. (strain CCS1) GN=hisS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.758e-15
Identity = 57/167 (34.13%), Postives = 93/167 (55.69%), Query Frame = -3
Query:  353 DKVVFDLSLARGLDYYTGVIFEAIF-------KGAT-QVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLG-DKLPLAAELVSELWNAKVKAE-YMVHKK----VMKLIDRARESKIPWMVIVGERELNEGIVKLKNI 811
            D+++ D S+ RGL YYTG ++EA         KG T Q GS+A GGRYD+L+  F  ++VPA GVS+G++R+   +    K + +        V+V ++  D++     +V+ L NA ++AE Y+ + K     +K  D+ R    P  +I G  E   G+V+LK++
Sbjct:  305 DRIIIDPSVVRGLGYYTGPVYEAELTFDVQNEKGQTVQFGSVAGGGRYDDLVKRFTGQEVPATGVSIGVDRLLAALHATGKLKGE----DAGPVIVTVMDRDRMAEYQAMVATLRNAGIRAEVYLGNPKNFGNQLKYADKRRS---PVAIIQGSDEAARGVVQLKDL 464          
The following BLAST results are available for this feature:
BLAST of CV884405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
SYH_SHEPC2.203e-1533.33Histidyl-tRNA synthetase OS=Shewanella putrefacien... [more]
SYH_NANEQ2.203e-1528.95Histidyl-tRNA synthetase OS=Nanoarchaeum equitans ... [more]
SYH_MOOTA2.203e-1536.02Histidyl-tRNA synthetase OS=Moorella thermoacetica... [more]
SYH_LEPBP2.877e-1529.79Histidyl-tRNA synthetase OS=Leptospira biflexa ser... [more]
SYH_LEPBA2.877e-1529.79Histidyl-tRNA synthetase OS=Leptospira biflexa ser... [more]
SYH_ANATD2.877e-1528.32Histidyl-tRNA synthetase OS=Anaerocellum thermophi... [more]
SYH1_BACCR2.877e-1532.10Histidyl-tRNA synthetase 1 OS=Bacillus cereus (str... [more]
SYH1_BACC12.877e-1531.36Histidyl-tRNA synthetase 1 OS=Bacillus cereus (str... [more]
SYH_PYRCJ3.758e-1529.24Histidyl-tRNA synthetase OS=Pyrobaculum calidifont... [more]
SYH_JANSC3.758e-1534.13Histidyl-tRNA synthetase OS=Jannaschia sp. (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884405 ID=CV884405; Name=CV884405; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTCATCAAAATTCTTTAATTAAAATTCTCGAATCT
ATAAAATGACAACCATTATAATATCGGACAATTTCTACAGGGGAAAATGG
GAGAAAAAAACAAACAACAAATCATCTTCAATTCAATTTTTTACACGTTC
GTTACCAATTTGTCGAGATGCAGATATCAGACATGCCGTTGCAGCTAATG
ACATGCAGATTAATTGATATTCCAAGCGTTGTGTAACGTAGCAGAATGGC
TTAAAGTTGTGCTTCAACTAAATATTACGTTCATTGGTTCAATCGTCTTT
GAATTTCCTCAACAAAGTTACTTCTGGAAATAACCTCCTCTTGAGTGGTG
TCAATGTTCTTTAATTTTACTATTCCTTCATTCAGCTCGCGCTCACCCAC
AATTACCATCCAAGGGATTTTCGACTCCCTGGCACGATCAATGAGCTTCA
TCACTTTCTTATGGACCATGTATTCTGCTTTCACCTTGGCATTCCACAGC
TCGCTGACCAGTTCAGCAGCTAGAGGAAGTTTATCCCCGAGCAAGCCCAC
AAGTACTTGCGTCTCGGTGGCTCGAATTATCTGGTTCCTTTCTTTTTGAA
TCTGCTCCATTATAGTAAAGACTCGCTCAATTCCAAGACTGACACCAACT
GCAGGAACCTGCTTTGTACCAAACATTCCGATGAGGTTGTCATAACGTCC
ACCAGCTGCAATTGAACCAACCTGTGTGGCCCCTTTGAAAATGGCTTCAA
ATATGACACCAGTGTAATAGTCAAGACCTCTTGCAAGACTCAAATCAAAA
ACCACTTTATCAATGCACTTTGACTTTTCTAGAGCTTGAAAAAAAATTTC
AAGGTCATCCAATGCAAGTTTAGCTGAACTGTTTTCTAAAA
back to top