CV884405

Overview
NameCV884405
Unique NameCV884405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_MICLC (Histidyl-tRNA synthetase OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=hisS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.908e-15
Identity = 55/177 (31.07%), Postives = 94/177 (53.11%), Query Frame = -3
Query:  284 KVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAK-VKAEYMVH-KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 808
            + V DLS+ARGLDYYTG ++E +  G  Q+GSI +GGRYD L    G +  P VG+S+G+ R+  +M  + ++     R+  T V V L  D+    A+ V+ L   + + AE  V  +K  + I  A    IP++  +G  +    + ++K+I + ++     +++    +  L Q
Sbjct:  279 RAVADLSIARGLDYYTGTVYETVLVGHEQLGSICSGGRYDALASK-GNRVFPGVGLSIGVTRL--VMRMLSQQMAVASRSVPTAVYVALTADEDWSEAQDVAALLRERGIPAEVAVSAEKFGRQIKYADRRGIPFVWFMGRDDAGARVHEVKDIRSGEQHAADPADWTPPAEDLLPQ 452          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_BIFA0 (Histidyl-tRNA synthetase OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=hisS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.908e-15
Identity = 63/185 (34.05%), Postives = 94/185 (50.81%), Query Frame = -3
Query:  347 ENSSAKLALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGL-----LGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDT 886
            E + AK  LD L +      + +    V+ DL +ARGLDYYTG ++E   +GA+ +GSI +GGRYDNL    G ++ P VG+S+G+ R+ + M  + +      R +   VLV +      GD   +A  L S    A V        K+ K I  A +  IP++    E   N+G  ++KNI T
Sbjct:  260 EYAMAKEGLDTLSMIIDEARRIRP-GSVMADLKIARGLDYYTGSVYETFLEGASDLGSICSGGRYDNLATQ-GNRKYPGVGLSIGLSRLVSYM--LHRAGATASRMSPACVLVAVWDEENRGDSNAIANTLRSRGIAADVAP---TAAKLGKQIKYADKLGIPYVWFPNENPENDGSDEVKNIIT 437          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SHEHH (Histidyl-tRNA synthetase OS=Shewanella halifaxensis (strain HAW-EB4) GN=hisS PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.372e-15
Identity = 53/163 (32.52%), Postives = 87/163 (53.37%), Query Frame = -3
Query:  323 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPL-AAELVSELWNAKVKAEYMVH------KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI-DTTQEEVISR 787
            L RGLDYY   +FE +       G++ AGGRYD L+G  G K  PAVG ++G+ER+  ++E ++ +++         V V  +GD   + A ++  EL  +   A+ M H      KK MK   RA +S     +++GE EL    V +K++ +   +E+++R
Sbjct:  257 LVRGLDYYNRTVFEWVTSSLGSQGTVLAGGRYDGLVGQLGGKPTPAVGFAMGLERIVLLLETLELDKD---IGPSVDVYVTAMGDNCRVEAIKIAQELRASLPTAKVMSHCGGGNFKKQMK---RADKSGATVALVIGEDELANNQVAVKHLREDKAQELVAR 413          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH1_BACCZ (Histidyl-tRNA synthetase 1 OS=Bacillus cereus (strain ZK / E33L) GN=hisS1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.372e-15
Identity = 50/169 (29.59%), Postives = 90/169 (53.25%), Query Frame = -3
Query:  317 DKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMF--GTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPL--AAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSN 811
            +  +F+  LARGL  YTG ++E   K  +   SI +GGRYDN+IG F       P VG+S G++ ++T + Q      + I +T   + +  +G +L     A+ +    + KV+ E +  +K+ + ++ A +  IP+++I+GE EL+     L+N+    E  +  S+
Sbjct:  259 ENAIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAFRGDNMNYPTVGISFGLDVIYTALSQ-----KETISST-ADIFIIPIGTELQCLQIAQQLRSTTSLKVELE-LTGRKLKRALNYANKENIPYVLIIGEEELSTETAMLRNMKEGSEVKVPLSS 420          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_THESQ (Histidyl-tRNA synthetase OS=Thermotoga sp. (strain RQ2) GN=hisS PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.093e-14
Identity = 56/175 (32.00%), Postives = 89/175 (50.86%), Query Frame = -3
Query:  284 VFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPL-AAELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 802
            V D +L RGLDYYT  +FE   +G     +IA GGRYD L    G   VPA+G + GIER   I+  ++ E  +I       V +  LG+K  +    L  EL    +  +  ++ +K+   +  A      + VI+G+ EL +GIV L++++T  +  I R    + I  R+++
Sbjct:  248 VEDHTLVRGLDYYTRTVFEVRHEGLGAQSAIAGGGRYDGLFAELGGSSVPALGFAGGIER---IILALKAEGIEIPMKNVHLVYIATLGEKAFMDGVRLAGELRKKGLSVDVDIMDRKLSGQLKHASRMGSRYAVIIGDEELEKGIVILRDLETGDQVEIDRDFAADYIAERVSK 419          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_THEMA (Histidyl-tRNA synthetase OS=Thermotoga maritima GN=hisS PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.093e-14
Identity = 56/175 (32.00%), Postives = 89/175 (50.86%), Query Frame = -3
Query:  284 VFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPL-AAELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 802
            V D +L RGLDYYT  +FE   +G     +IA GGRYD L    G   VPA+G + GIER   I+  ++ E  +I       V +  LG+K  +    L  EL    +  +  ++ +K+   +  A      + VI+G+ EL +GIV L++++T  +  I R    + I  R+++
Sbjct:  248 VEDHTLVRGLDYYTRTVFEVRHEGLGAQSAIAGGGRYDGLFAELGGSSVPALGFAGGIER---IILALKAEGIEIPMKNVHLVYIATLGEKAFMDGVRLAGELRKKGLSVDVDIMDRKLSGQLKHASRMGSRYAVIIGDEELEKGIVILRDLETGDQVEIDRDFAADYIAERVSK 419          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_METTH (Histidyl-tRNA synthetase OS=Methanobacterium thermoautotrophicum GN=hisS PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.093e-14
Identity = 54/194 (27.84%), Postives = 96/194 (49.48%), Query Frame = -3
Query:  293 ALDDLEIFFQALEKSKC--IDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVH-KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRR 865
            +L+ LE F + +E      +D    +L +ARGLDYYTG++FE           I  GG Y NL+  FG ++V + G + G +R+   +   ++    +        ++ +    +P A  +  EL  A V A+  V  +K+ K +  A      + V+ GERE+ +G V +K+++   +E + R   V++I+ R
Sbjct:  237 SLEALEEFRELVETLHYFGVDDYHVNLGIARGLDYYTGIVFEIYVPELGAQKQICGGGTY-NLVETFGGERVESTGFAFGFDRLMNALGMDEENMRMV-----DVFVIPIQDSTVPEAIRITQELRAAGVSADLEVSGRKLRKALSHADNLGARFAVLTGEREIQDGKVTVKDMERNSQETLPRDEMVDKIKGR 424          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_DINSH (Histidyl-tRNA synthetase OS=Dinoroseobacter shibae (strain DFL 12) GN=hisS PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.093e-14
Identity = 56/164 (34.15%), Postives = 88/164 (53.66%), Query Frame = -3
Query:  353 DKVVFDLSLARGLDYYTGVIFEAIF-------KGAT-QVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLG-DKLPLAAELVSELWNAKVKAEYMV--HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI 811
            D++V D S+ RGL YYTG +FEA         KG T Q GS+A GGRYD+L+  F  + VPA GVS+G++R+   +    + + Q   A    V+V ++  D++     +V  L +A ++AE  +   K     +  A +   P  VI G  E   G+V++K++
Sbjct:  297 DRIVIDPSVVRGLGYYTGPVFEAELTFEVQNDKGQTVQFGSVAGGGRYDDLVKRFTGQAVPATGVSIGVDRLLAAL----RAKGQAQTAAPGPVIVTVMDRDRIADYQAMVGTLRDAGIRAELYLGNPKNFGNQLKYADKRAAPVAVIQGSDEAARGVVQIKDL 456          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_AERPE (Histidyl-tRNA synthetase OS=Aeropyrum pernix GN=hisS PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.093e-14
Identity = 60/200 (30.00%), Postives = 94/200 (47.00%), Query Frame = -3
Query:  290 NSSAKLALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESK--IPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 883
            N   + ALD LE      +  +    V  D+SL RGLDYYTG I E +     ++GS+A GGRYD L+GMF  + +PA GVS+GIER+  I   ++     +   T  QV V +L  +    A   + +         +   +    + R + S+  IP +  VG +E   G + L +    +   +     V+ ++R L
Sbjct:  241 NEKVREALDHLEEMLSLADDKR----VELDMSLVRGLDYYTGPILEVVLD-EPRIGSVAGGGRYDGLVGMFAGRDIPATGVSIGIERI--IDAGLELGVYSLDVKTVAQVAVVVLDRRYYRYAWEAARILRRGGLNVRIDLSRASGQVQRRKASRLGIPVLAFVGAKEAEGGFLTLYSAAKGERVAVPLGEAVKAVERLL 433          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH1_BACHK (Histidyl-tRNA synthetase 1 OS=Bacillus thuringiensis subsp. konkukian GN=hisS1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.093e-14
Identity = 50/169 (29.59%), Postives = 90/169 (53.25%), Query Frame = -3
Query:  317 DKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMF--GTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPL--AAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSN 811
            +  +F+  LARGL  YTG ++E   K  +   SI +GGRYDN+IG F       P VG+S G++ ++T + Q      + + +T   V +  LG +L     A+ +    + K++ E +  +K+ + ++ A +  IP+++I+GE E+    V L+N+    E  +  S+
Sbjct:  259 ENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAFRGDNMNYPTVGISFGLDVIYTALSQ-----KETVSST-ADVFIIPLGTELQCLQIAQQLRSTTSLKIELE-LAGRKLKRALNYANKENIPYVLIIGEEEICTETVMLRNMKEGSEVKVPLSS 420          
The following BLAST results are available for this feature:
BLAST of CV884405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
SYH_MICLC4.908e-1531.07Histidyl-tRNA synthetase OS=Micrococcus luteus (st... [more]
SYH_BIFA04.908e-1534.05Histidyl-tRNA synthetase OS=Bifidobacterium animal... [more]
SYH_SHEHH8.372e-1532.52Histidyl-tRNA synthetase OS=Shewanella halifaxensi... [more]
SYH1_BACCZ8.372e-1529.59Histidyl-tRNA synthetase 1 OS=Bacillus cereus (str... [more]
SYH_THESQ1.093e-1432.00Histidyl-tRNA synthetase OS=Thermotoga sp. (strain... [more]
SYH_THEMA1.093e-1432.00Histidyl-tRNA synthetase OS=Thermotoga maritima GN... [more]
SYH_METTH1.093e-1427.84Histidyl-tRNA synthetase OS=Methanobacterium therm... [more]
SYH_DINSH1.093e-1434.15Histidyl-tRNA synthetase OS=Dinoroseobacter shibae... [more]
SYH_AERPE1.093e-1430.00Histidyl-tRNA synthetase OS=Aeropyrum pernix GN=hi... [more]
SYH1_BACHK1.093e-1429.59Histidyl-tRNA synthetase 1 OS=Bacillus thuringiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884405 ID=CV884405; Name=CV884405; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTCATCAAAATTCTTTAATTAAAATTCTCGAATCT
ATAAAATGACAACCATTATAATATCGGACAATTTCTACAGGGGAAAATGG
GAGAAAAAAACAAACAACAAATCATCTTCAATTCAATTTTTTACACGTTC
GTTACCAATTTGTCGAGATGCAGATATCAGACATGCCGTTGCAGCTAATG
ACATGCAGATTAATTGATATTCCAAGCGTTGTGTAACGTAGCAGAATGGC
TTAAAGTTGTGCTTCAACTAAATATTACGTTCATTGGTTCAATCGTCTTT
GAATTTCCTCAACAAAGTTACTTCTGGAAATAACCTCCTCTTGAGTGGTG
TCAATGTTCTTTAATTTTACTATTCCTTCATTCAGCTCGCGCTCACCCAC
AATTACCATCCAAGGGATTTTCGACTCCCTGGCACGATCAATGAGCTTCA
TCACTTTCTTATGGACCATGTATTCTGCTTTCACCTTGGCATTCCACAGC
TCGCTGACCAGTTCAGCAGCTAGAGGAAGTTTATCCCCGAGCAAGCCCAC
AAGTACTTGCGTCTCGGTGGCTCGAATTATCTGGTTCCTTTCTTTTTGAA
TCTGCTCCATTATAGTAAAGACTCGCTCAATTCCAAGACTGACACCAACT
GCAGGAACCTGCTTTGTACCAAACATTCCGATGAGGTTGTCATAACGTCC
ACCAGCTGCAATTGAACCAACCTGTGTGGCCCCTTTGAAAATGGCTTCAA
ATATGACACCAGTGTAATAGTCAAGACCTCTTGCAAGACTCAAATCAAAA
ACCACTTTATCAATGCACTTTGACTTTTCTAGAGCTTGAAAAAAAATTTC
AAGGTCATCCAATGCAAGTTTAGCTGAACTGTTTTCTAAAA
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