CV884405

Overview
NameCV884405
Unique NameCV884405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH1_BACAN (Histidyl-tRNA synthetase 1 OS=Bacillus anthracis GN=hisS-1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.093e-14
Identity = 51/169 (30.18%), Postives = 90/169 (53.25%), Query Frame = -3
Query:  317 DKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMF--GTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPL--AAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSN 811
            +  +F+  LARGL  YTG ++E   K  +   SI +GGRYDN+IG F       P VG+S G++ ++T + Q      + I +T   V +  LG +L     A+ +    + K++ E +  +K+ + ++ A +  IP+++I+GE E+    V L+N+    E  +  S+
Sbjct:  259 ENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAFRGDDMSYPTVGISFGLDVIYTALSQ-----KETISST-ADVFIIPLGTELQCLQIAQQLRSTTSLKIELE-LAGRKLKRALNYANKENIPYVLIIGEEEICTETVMLRNMKEGSEVKVPLSS 420          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_THETN (Histidyl-tRNA synthetase OS=Thermoanaerobacter tengcongensis GN=hisS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.428e-14
Identity = 62/196 (31.63%), Postives = 98/196 (50.00%), Query Frame = -3
Query:  290 DDLEIFFQALEK---SKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPL-AAELVSELW--NAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 859
            DD    F+ L+K   +   D +V D  + RGLDYYT   FE I K     G++  GGRYD LI   G   +P VG  +GIER+   +EQ      +I +     + +  +GD+  L    L ++L     KV+ ++M  + +   +  A +    + V++GE EL    VKLKN+ T +E  I     ++EI++ +
Sbjct:  229 DDCRNHFEELKKYLDAMGYDYIV-DPRIVRGLDYYTKTAFEIISKDIGAQGTVCGGGRYDGLIEECGGPSMPGVGFGMGIERLLLTLEQ---NGIEIPKPEGPDLFIAYIGDEAKLFTFTLANKLRFNGLKVEIDHM-ERSLKAQMKYANKLNAKFAVVIGEEELESKKVKLKNMATGEETEI----LIDEIEKAI 415          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_THEP1 (Histidyl-tRNA synthetase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=hisS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.428e-14
Identity = 59/178 (33.15%), Postives = 92/178 (51.69%), Query Frame = -3
Query:  284 VFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-----LPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 802
            V D +L RGLDYYT  +FE   +G     +IA GGRYD L    G   VPA+G + GIER   I+  ++ E  +I       V V  LG+K     + LA EL  +  +  V    ++ +K+   +  A      + VI+G+ EL +GIV L++++T  +  + R   V+ I  R+++
Sbjct:  248 VEDHTLVRGLDYYTRTVFEVRHEGLGAQNTIAGGGRYDGLFVELGGSSVPALGFAGGIER---IILALKAEEIEIPIKNVHLVYVVTLGEKAFADGVQLAVELRKKGLSVDVD---IMDRKLSGQLKHAHRMGSRYAVIIGDEELEKGIVILRDLETGDQVEVDRDFAVDYIAERVSK 419          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_ROSDO (Histidyl-tRNA synthetase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=hisS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.428e-14
Identity = 66/208 (31.73%), Postives = 110/208 (52.88%), Query Frame = -3
Query:  284 KLALDDLEIFFQALEK-SKCIDKVVFDLSLARGLDYYTGVIFEAIF-------KGATQ-VGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLG-DKLPLAAELVSELWNAKVKAEYMV--HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 871
            K  +D+LE   + L   S   D++V D S+ RGL YYTG ++EA         KG T+  GS+A GGRYD+L+  F  ++VPA GVS+G++R+   +      + ++       V+V ++  D++     +V+EL  A ++AE  +   K     +  A     P  VI G  E  +G+V++K++    E  I++S  +EE + R +Q
Sbjct:  295 KEGVDELEKISELLSAGSYGPDRIVIDPSVVRGLGYYTGPVYEAELTFEIQDDKGRTRNFGSVAGGGRYDDLVKRFTGQEVPATGVSIGVDRLLAALH----AKGRLDTTDVGPVVVTVMDRDRMADYQAMVAELRQAGIRAEVYLGNPKNFGNQLKYADTRNSPVAVIEGGDEHEKGVVQIKDLILGAE--IAKSATLEEWKDRPSQ 496          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_HELMI (Histidyl-tRNA synthetase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=hisS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.428e-14
Identity = 58/165 (35.15%), Postives = 86/165 (52.12%), Query Frame = -3
Query:  329 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQ----VLVGLLGD-KLPLAAELVSEL--WNAKVKAEYMVH--KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVI 796
            D  L RGLDYYT   FE + +      SI  GGRYD+L+   G   VP +G  LG+ERV   M      +NQ +   +++    + + L G+   P+A  L  +L      V+ +Y+    K  MK  DR R   +P++VIVGE EL EG + L+ + T +++ I
Sbjct:  252 DDRLVRGLDYYTKTAFEIVSRDIGAQSSIGGGGRYDHLVEALGGPPVPGIGFGLGLERVLLTM------KNQGLLDADSREQRDLFIALAGEGTQPVAFGLAQKLRQRGVAVEMDYLERSLKAQMKTADRFR---VPYVVIVGEGELKEGKLTLRTMATGEQQQI 407          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_ANAPZ (Histidyl-tRNA synthetase OS=Anaplasma phagocytophilum (strain HZ) GN=hisS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.428e-14
Identity = 52/163 (31.90%), Postives = 82/163 (50.31%), Query Frame = -3
Query:  299 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 787
            L RGLDYYTG +FE          +I AGGRYDNL+   G + VPA+G + G+ER+  +M   +  +  +     ++ +V      + +  E+   L   +V  + +   K    I RA   K    +I+G+ E+N   V  KN+ T ++E IS SN  E ++
Sbjct:  256 LVRGLDYYTGTVFEYKTSSLGAQDAIIAGGRYDNLVAAMGGENVPAIGFAGGVERLAALMSYSRTRKFCVFILPISEEVV---SHAMRITYEIRRTLSGVQVICDIVTRLKTG--IKRADRQKADIALILGDEEVNRNAVSCKNMLTGKQEEISISNITEYLK 413          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_THEAB (Histidyl-tRNA synthetase OS=Thermosipho africanus (strain TCF52B) GN=hisS PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.865e-14
Identity = 52/168 (30.95%), Postives = 85/168 (50.60%), Query Frame = -3
Query:  311 KVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPL-AAELVSELWNAKVKAEYMVHKKVMKL-IDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFV 808
            K V D  L RGLDYY GV+FE          ++  GGRYD LI   G  Q P++G ++GIER   ++  ++ E+  +      ++ V  LG++  + A ++  +L +  +   +   ++ +   +  A   K    VIVGE EL   IV L+N++T ++  I R   V
Sbjct:  245 KYVEDPLLVRGLDYYNGVVFEIHHGDLGAQSAVGGGGRYDKLIKELGGSQTPSLGFAMGIER---LIIALKNEKIPVEEIKNNEIFVAHLGEQARIEALKIAEDLRDNGISVVFSTMERGLSAQLKHAARLKCKLCVIVGENELERNIVILRNMETGEQIEIERDYVV 409          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SULAC (Histidyl-tRNA synthetase OS=Sulfolobus acidocaldarius GN=hisS PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.865e-14
Identity = 52/165 (31.52%), Postives = 88/165 (53.33%), Query Frame = -3
Query:  329 KVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQI----QKERNQIIRATETQVLVGLLGDKLPLAAELVSEL-WNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVI 808
            K+  DL   RGL YYTGVIFE I    +   SIA GGRYDNL+ ++G    PA+G ++G+ER   ++ +I    Q+++  +I    T+       D L LA  L++ L  N  +    +    + KL+    E     +V++G++EL E  + +K ++  +++ +
Sbjct:  259 KIKIDLGFVRGLAYYTGVIFEVIHPDVSF--SIAGGGRYDNLVRLYGGADTPAIGFAIGVERTALVINKIKSDLQRKKIAVIPLISTK-------DSLSLAIRLLNILRKNNIIGVLNLKDVPLSKLMTYYVEEGYNAIVLIGKKELEENSITIKFLEKREQKTV 414          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_LACAC (Histidyl-tRNA synthetase OS=Lactobacillus acidophilus GN=hisS PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.865e-14
Identity = 59/205 (28.78%), Postives = 105/205 (51.22%), Query Frame = -3
Query:  299 DDLEIFFQALEKSKCIDKV----VFDLSLARGLDYYTGVIFE------AIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAEYMVHKKVMKL-IDRARESKIPWMVIVGERELNEGIVKL------KNIDTTQEEVISRSNFVEEIQ 859
            DD +  F+++   K +D++    V D  L RGLDYYTGVIFE      ++++ AT   +I  GGRYD+L+  F     PAVG  +G ER+  ++E   K+   +  +      +  +G+     A E+   L     +A++ V++K +K    +A      +++ +GE+EL  G++ +      K ID + E++   S  + E++
Sbjct:  231 DDTKNNFESI--LKMLDQLGIDYVIDDDLVRGLDYYTGVIFEFMVEDKSLWESAT---TILGGGRYDHLVEEFNGPATPAVGFGIGEERLMLVLE---KQNPALFESNSIDFFIANIGEGTAQKAIEITRSLRKQGFEADFDVNQKKLKAQFKKADRDHAKYVITLGEKELENGVLNIKRLSDGKTIDLSLEDINDMSKVMGELK 427          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_COXBU (Histidyl-tRNA synthetase OS=Coxiella burnetii GN=hisS PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.865e-14
Identity = 49/165 (29.70%), Postives = 88/165 (53.33%), Query Frame = -3
Query:  311 SLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQI----IRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI-DTTQEEVISRSNFV 790
            +L RGLDYYT  +FE +       G++ AGGRYDNL+ + G K  PA G + G+ER+  ++  +Q+  ++I    + A E  +  GLL     +  +L + L    ++A+ +    +     RA +S   W +++GE E+    V LK++ +T  ++ ++R   +
Sbjct:  256 TLVRGLDYYTHTVFEWVTDQLGAQGTVCAGGRYDNLVELLGGKSTPAAGFAAGLERLVLLLRGVQECLDKIDIYVVIAGEAVIQEGLL-----MTEQLRNVLPEWVIEAD-LSGSSLKSQFKRADKSGAKWALVIGEEEIKTNTVTLKHLRETVPQKSLTRDTLI 414          
The following BLAST results are available for this feature:
BLAST of CV884405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
SYH1_BACAN1.093e-1430.18Histidyl-tRNA synthetase 1 OS=Bacillus anthracis G... [more]
SYH_THETN1.428e-1431.63Histidyl-tRNA synthetase OS=Thermoanaerobacter ten... [more]
SYH_THEP11.428e-1433.15Histidyl-tRNA synthetase OS=Thermotoga petrophila ... [more]
SYH_ROSDO1.428e-1431.73Histidyl-tRNA synthetase OS=Roseobacter denitrific... [more]
SYH_HELMI1.428e-1435.15Histidyl-tRNA synthetase OS=Heliobacterium modesti... [more]
SYH_ANAPZ1.428e-1431.90Histidyl-tRNA synthetase OS=Anaplasma phagocytophi... [more]
SYH_THEAB1.865e-1430.95Histidyl-tRNA synthetase OS=Thermosipho africanus ... [more]
SYH_SULAC1.865e-1431.52Histidyl-tRNA synthetase OS=Sulfolobus acidocaldar... [more]
SYH_LACAC1.865e-1428.78Histidyl-tRNA synthetase OS=Lactobacillus acidophi... [more]
SYH_COXBU1.865e-1429.70Histidyl-tRNA synthetase OS=Coxiella burnetii GN=h... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884405 ID=CV884405; Name=CV884405; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTCATCAAAATTCTTTAATTAAAATTCTCGAATCT
ATAAAATGACAACCATTATAATATCGGACAATTTCTACAGGGGAAAATGG
GAGAAAAAAACAAACAACAAATCATCTTCAATTCAATTTTTTACACGTTC
GTTACCAATTTGTCGAGATGCAGATATCAGACATGCCGTTGCAGCTAATG
ACATGCAGATTAATTGATATTCCAAGCGTTGTGTAACGTAGCAGAATGGC
TTAAAGTTGTGCTTCAACTAAATATTACGTTCATTGGTTCAATCGTCTTT
GAATTTCCTCAACAAAGTTACTTCTGGAAATAACCTCCTCTTGAGTGGTG
TCAATGTTCTTTAATTTTACTATTCCTTCATTCAGCTCGCGCTCACCCAC
AATTACCATCCAAGGGATTTTCGACTCCCTGGCACGATCAATGAGCTTCA
TCACTTTCTTATGGACCATGTATTCTGCTTTCACCTTGGCATTCCACAGC
TCGCTGACCAGTTCAGCAGCTAGAGGAAGTTTATCCCCGAGCAAGCCCAC
AAGTACTTGCGTCTCGGTGGCTCGAATTATCTGGTTCCTTTCTTTTTGAA
TCTGCTCCATTATAGTAAAGACTCGCTCAATTCCAAGACTGACACCAACT
GCAGGAACCTGCTTTGTACCAAACATTCCGATGAGGTTGTCATAACGTCC
ACCAGCTGCAATTGAACCAACCTGTGTGGCCCCTTTGAAAATGGCTTCAA
ATATGACACCAGTGTAATAGTCAAGACCTCTTGCAAGACTCAAATCAAAA
ACCACTTTATCAATGCACTTTGACTTTTCTAGAGCTTGAAAAAAAATTTC
AAGGTCATCCAATGCAAGTTTAGCTGAACTGTTTTCTAAAA
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