CV884405

Overview
NameCV884405
Unique NameCV884405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_THENV (Histidyl-tRNA synthetase OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=hisS PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.181e-14
Identity = 46/161 (28.57%), Postives = 94/161 (58.39%), Query Frame = -3
Query:  338 IDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTI--MEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQE 814
            +D++ FD+S+ RGLDYYTGV+FEA + G  ++ ++  GGRYD+L+ ++   ++PA+G ++G+ER+     +E+++K  +  I   +     G     + LA +L +   +  ++   +  K +    +   +    +++I+G REL  G+VK++++   +E
Sbjct:  258 VDRLRFDMSIVRGLDYYTGVVFEA-YVGKYRL-AVGGGGRYDDLLELYSGVKMPALGFAIGVERLMEAVGLERVEKPLDYYIYIFDD----GAYPHAVALAKKLRAAGHSVAIE---LGEKNLKDAFEYILKVGTKYLIIMGRRELERGVVKIRDLQRREE 409          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SULNB (Histidyl-tRNA synthetase OS=Sulfurovum sp. (strain NBC37-1) GN=hisS PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.181e-14
Identity = 55/163 (33.74%), Postives = 81/163 (49.69%), Query Frame = -3
Query:  329 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNA-----KVKAEYMV--HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVI 796
            D +L RGLDYY    FE +        +IA GGRYD L+     K  PAVG ++GIER+            ++++  ET+     +G  +P A E +  L N      KV  EY     K  MK +D+A      + +++GE EL  G V LK+++T +E+ I
Sbjct:  250 DTNLVRGLDYYNKTAFEFVSNEIGSQSAIAGGGRYDKLVEYLDGKPTPAVGFAIGIERIM-----------ELVQMPETKKEGYYMGAMIPEAIEKIIMLGNRKRATDKVTVEYSSKGFKSHMKGVDKANAR---YALLIGEDELKNGTVWLKDLETKEEKSI 398          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_STRPM (Histidyl-tRNA synthetase OS=Streptococcus pyogenes serotype M28 GN=hisS PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.181e-14
Identity = 56/161 (34.78%), Postives = 80/161 (49.69%), Query Frame = -3
Query:  326 VFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKL-PLAAELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVIS 802
            V D ++ RGLDYY   IFE I        +I AGGRYD+L+G FG  + P  G  LG+ER+  I   I+K+   +   TE  V + +LGD     A ELV  +      AE   + +K+      A   K   ++ +GE E+  G   +KN  + QE  +S
Sbjct:  252 VIDTNMVRGLDYYNHTIFEFITSVEGSDLTICAGGRYDSLVGYFGGPETPGFGFGLGLERLLMI---IEKQGITLPIETEMDVYLAVLGDSANSKALELVQAIRRQGFTAERDYLGRKIKAQFKSADTFKAKLVMTLGESEVEAGKAVIKNNRSRQEVEVS 409          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SHEPA (Histidyl-tRNA synthetase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=hisS PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.181e-14
Identity = 52/163 (31.90%), Postives = 87/163 (53.37%), Query Frame = -3
Query:  323 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPL-AAELVSELWNAKVKAEYMVH------KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI-DTTQEEVISR 787
            L RGLDYY   +FE +       G++ AGGRYD L+G  G K  PAVG ++G+ER+  +++ ++ +++         V V  +GD   + A ++  EL  +   A+ M H      KK MK   RA +S     +++GE EL    V +K++ +   +E+++R
Sbjct:  257 LVRGLDYYNRTVFEWVTSSLGSQGTVLAGGRYDGLVGQLGGKPTPAVGFAMGLERIVLLLQTLELDKD---IGPAVDVYVTAMGDNCKVEAIKIAQELRASLPTAKVMSHCGGGNFKKQMK---RADKSGACVALVIGEDELANNQVAVKHLREDKAQELVAR 413          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_PICTO (Histidyl-tRNA synthetase OS=Picrophilus torridus GN=hisS PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.181e-14
Identity = 54/180 (30.00%), Postives = 98/180 (54.44%), Query Frame = -3
Query:  302 ALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERN-QIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARES-KIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEI 835
            AL       K+  DLS+ RGL YYTG++FEA F  + ++ +I  GGRYDNL  +F  + +PAVG ++G      ++E + K  N    +    +  V  +        E+++++  +   A   V+K+ M+ I +  ES K  +++I+G+REL+   + +KN+ T ++  ++  +F+  I
Sbjct:  247 ALTSKYTKSKLNIDLSVVRGLSYYTGIVFEA-FDISGELRAILGGGRYDNLSNLFINESIPAVGFAIG----DAVIELLLKRNNLWNYKDKRKRYYVVNISSSPEAHIEILNKIRGSGNIAISEVNKRRMQTIIKYAESIKCDFLIIIGDRELSSKKMTIKNLRTQEQAEMNIDDFINNI 421          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_COLP3 (Histidyl-tRNA synthetase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=hisS PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.181e-14
Identity = 53/160 (33.12%), Postives = 84/160 (52.50%), Query Frame = -3
Query:  335 VFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKV-KAEYMVH---KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEE 802
            V +  L RGLDYY   +FE +       G+I AGGRYD L+   G K  PA G +LGIER+  ++ +++K  N  IR  +    V +LGD   +AA  ++E W  +V +     H     + K + RA +S     +I+G+ E+ +  V +K +   +E+
Sbjct:  254 VLNERLVRGLDYYNRTVFEWVTTTLGAQGTICAGGRYDGLVEQLGGKATPAFGFALGIERLVLMLTELEKVTN--IR-PQVDAYVVILGDDAQVAANKLAEQWRDQVPEIRLQCHCGGGNMKKQLKRADKSGAQIALILGDDEITQEKVMVKYLRGQKEQ 410          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_CLONN (Histidyl-tRNA synthetase OS=Clostridium novyi (strain NT) GN=hisS PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.181e-14
Identity = 56/163 (34.36%), Postives = 85/163 (52.15%), Query Frame = -3
Query:  308 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIER-VFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAA-ELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVE 787
            + RGLDYYT  +FE I    T  G    GGRY+ LI   G K  PAVG  +GIER + T+ME       +I +  E  + +G +GD   + A +LV+ L    +KAE   ++K V   +  A +    + +I+G+ E+ E    LK ++  Q+  +S +N  E
Sbjct:  255 IVRGLDYYTKTVFEIINNDITVCG----GGRYNGLIEQIGGKPTPAVGFGMGIERLILTLME----NNIEIPKPKEMDIFIGSMGDNGKIEAFKLVNALRTKGLKAECDHMNKSVKAQMKYANKIDASYSMIIGDTEIEEKKANLKRMEDGQQFEVSLNNLDE 409          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_CLOBH (Histidyl-tRNA synthetase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=hisS PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.181e-14
Identity = 58/178 (32.58%), Postives = 91/178 (51.12%), Query Frame = -3
Query:  338 DDLEIFFQALEKSKCIDKVVF--DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPL-AAELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQE 859
            D+ +  F+AL+    +  + +  D  + RGLDYY+  +FE I    T    I AGGRYD LI   G   +PAVG  +GIER   ++  +Q++  +I       + +G +GDK  L   +L  EL +  +K E   + K V   +  A      + +++GE ELN G V LK ++  Q+
Sbjct:  229 DECKDHFEALKSYLDVLDIKYKVDPFIVRGLDYYSKTVFEFIIDDIT----ICAGGRYDYLIEEIGGPSMPAVGFGMGIER---LLLTLQEKAIEIPEEAYVDLYLGNMGDKAKLEVLKLAKELRDRHIKCEIDHMGKSVKAQMKYANRIGAKYSMVLGEEELNTGKVSLKRMEDGQQ 399          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_CLOB1 (Histidyl-tRNA synthetase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=hisS PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.181e-14
Identity = 58/178 (32.58%), Postives = 91/178 (51.12%), Query Frame = -3
Query:  338 DDLEIFFQALEKSKCIDKVVF--DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPL-AAELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQE 859
            D+ +  F+AL+    +  + +  D  + RGLDYY+  +FE I    T    I AGGRYD LI   G   +PAVG  +GIER   ++  +Q++  +I       + +G +GDK  L   +L  EL +  +K E   + K V   +  A      + +++GE ELN G V LK ++  Q+
Sbjct:  229 DECKDHFEALKSYLDVLDIKYKVDPFIVRGLDYYSKTVFEFIIDDIT----ICAGGRYDYLIEEIGGPSMPAVGFGMGIER---LLLTLQEKAIEIPEEAYVDLYLGNMGDKAKLEVLKLAKELRDRHIKCEIDHMGKSVKAQMKYANRIGAKYSMVLGEEELNTGKVSLKRMEDGQQ 399          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_CALS8 (Histidyl-tRNA synthetase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=hisS PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.181e-14
Identity = 56/199 (28.14%), Postives = 98/199 (49.25%), Query Frame = -3
Query:  290 DDLEIFFQALEKSKCIDKVVF--DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQ--IQKERNQIIRATETQVLVGLLGD-----KLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 859
            D+ +  F+AL+       V +  D  + RGLDYYT  +FE +     +  +I  GGRYDNLI   G    P +G ++G+ER+  ++ Q  +  ++ Q+      QV +  LGD        +A+ L  E  +  ++      K  MK  D+       + VI+G+ EL +G+ K++ + T+ EEV+      + I+ ++
Sbjct:  229 DECKTHFEALKGYLDAAGVCYKVDPYIVRGLDYYTRTVFEIVDVVLDKELAICGGGRYDNLIEQIGGSSTPGIGFAIGVERLIMLLSQKGLIPQKPQV-----PQVFIATLGDLATKKAFEIASTLRFEGISTVIEELSRSLKSQMKYADKL---GCDFAVIIGDDELEKGVCKVREMKTSSEEVVRIEGLAQHIKSKI 419          
The following BLAST results are available for this feature:
BLAST of CV884405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
SYH_THENV3.181e-1428.57Histidyl-tRNA synthetase OS=Thermoproteus neutroph... [more]
SYH_SULNB3.181e-1433.74Histidyl-tRNA synthetase OS=Sulfurovum sp. (strain... [more]
SYH_STRPM3.181e-1434.78Histidyl-tRNA synthetase OS=Streptococcus pyogenes... [more]
SYH_SHEPA3.181e-1431.90Histidyl-tRNA synthetase OS=Shewanella pealeana (s... [more]
SYH_PICTO3.181e-1430.00Histidyl-tRNA synthetase OS=Picrophilus torridus G... [more]
SYH_COLP33.181e-1433.13Histidyl-tRNA synthetase OS=Colwellia psychrerythr... [more]
SYH_CLONN3.181e-1434.36Histidyl-tRNA synthetase OS=Clostridium novyi (str... [more]
SYH_CLOBH3.181e-1432.58Histidyl-tRNA synthetase OS=Clostridium botulinum ... [more]
SYH_CLOB13.181e-1432.58Histidyl-tRNA synthetase OS=Clostridium botulinum ... [more]
SYH_CALS83.181e-1428.14Histidyl-tRNA synthetase OS=Caldicellulosiruptor s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884405 ID=CV884405; Name=CV884405; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTCATCAAAATTCTTTAATTAAAATTCTCGAATCT
ATAAAATGACAACCATTATAATATCGGACAATTTCTACAGGGGAAAATGG
GAGAAAAAAACAAACAACAAATCATCTTCAATTCAATTTTTTACACGTTC
GTTACCAATTTGTCGAGATGCAGATATCAGACATGCCGTTGCAGCTAATG
ACATGCAGATTAATTGATATTCCAAGCGTTGTGTAACGTAGCAGAATGGC
TTAAAGTTGTGCTTCAACTAAATATTACGTTCATTGGTTCAATCGTCTTT
GAATTTCCTCAACAAAGTTACTTCTGGAAATAACCTCCTCTTGAGTGGTG
TCAATGTTCTTTAATTTTACTATTCCTTCATTCAGCTCGCGCTCACCCAC
AATTACCATCCAAGGGATTTTCGACTCCCTGGCACGATCAATGAGCTTCA
TCACTTTCTTATGGACCATGTATTCTGCTTTCACCTTGGCATTCCACAGC
TCGCTGACCAGTTCAGCAGCTAGAGGAAGTTTATCCCCGAGCAAGCCCAC
AAGTACTTGCGTCTCGGTGGCTCGAATTATCTGGTTCCTTTCTTTTTGAA
TCTGCTCCATTATAGTAAAGACTCGCTCAATTCCAAGACTGACACCAACT
GCAGGAACCTGCTTTGTACCAAACATTCCGATGAGGTTGTCATAACGTCC
ACCAGCTGCAATTGAACCAACCTGTGTGGCCCCTTTGAAAATGGCTTCAA
ATATGACACCAGTGTAATAGTCAAGACCTCTTGCAAGACTCAAATCAAAA
ACCACTTTATCAATGCACTTTGACTTTTCTAGAGCTTGAAAAAAAATTTC
AAGGTCATCCAATGCAAGTTTAGCTGAACTGTTTTCTAAAA
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