CV884405

Overview
NameCV884405
Unique NameCV884405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3337 contig Csv1_Contig3337:514..1404. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_CLOTE (Histidyl-tRNA synthetase OS=Clostridium tetani GN=hisS PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.555e-24
Identity = 64/199 (32.16%), Postives = 116/199 (58.29%), Query Frame = -3
Query:  299 LENSSAKLALDDLEIFFQALEKSKCIDK-VVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 889
            +EN   K  + +LE     ++     DK    DL++ARGLDYYTG ++E +     Q+GS+ +GGRYDNL   +  +++P VG+S+G+ R+F  + +  K   +   +T +Q LV  +GD +  + ++ ++L   ++ +E Y+   K+ K    A + KIP+++++GE EL E  V +KN++T  +E +S    ++ I+
Sbjct:  240 IENDVFKEGVYELEKVVHYIKSFNVPDKNYKIDLTIARGLDYYTGTVYETVLNNYPQIGSVCSGGRYDNLAEHYTNQKLPGVGISIGLTRLFYQLRE-AKIIGENASSTLSQALVIPVGDTMEYSIKVANKLRENEIISELYLEDAKIGKKFAYADKLKIPYVILIGEDELKEEKVSVKNMETGNQESMSLEEAIKIIK 437          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_CYTH3 (Histidyl-tRNA synthetase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=hisS PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.683e-23
Identity = 66/201 (32.84%), Postives = 114/201 (56.72%), Query Frame = -3
Query:  302 ENSSAKLALDDLEIFFQALEKSKCID-KVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-----LPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEI 886
            ++S     +D+LE  F  +EKS   +  +  DL+LARGL YYTG IFE       Q+GS+  GGRYDNL G+FG   V  VG+S GI+R++ +M ++    +Q   +  T++L+    +      LP+  +L ++  N ++   Y    K+ K +  A + KIP+ +++GE E+N+G+  LKN+ + ++  ++    V ++
Sbjct:  258 QSSVGLKGIDELEKVFTLIEKSGLGNASIETDLTLARGLSYYTGAIFEVKILNV-QMGSVCGGGRYDNLTGVFGLPNVSGVGISFGIDRIYDVMNELNLFPSQ--ESNSTRLLICAFDENTFMHALPMVTKLRAQGINTEL---YPDPVKIKKQLSYADDKKIPFALLIGEDEMNQGLYSLKNLISGEQFKVTFDEVVHKL 452          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_PYRAB (Histidyl-tRNA synthetase OS=Pyrococcus abyssi GN=hisS PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.871e-23
Identity = 62/175 (35.43%), Postives = 102/175 (58.29%), Query Frame = -3
Query:  284 VVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 805
            +  DL +ARG DYYT ++FEAI      +GSI  GGRYDNLI +FG K  PA G ++GIER+  I+E   K     ++A    V V  +GD   +A  +V+ L  A ++++  +  +K+ K +D A    +   +IVG+R+L  G+V ++++++  +  +   N V +++  LNQ
Sbjct:  260 IQIDLGIARGFDYYTSIVFEAIVPNDLGIGSIGGGGRYDNLIEVFGGKPTPATGFAIGIERLIPILE--WKGLLPELKA-GPDVFVIPVGDSRDVATAIVTRLRKAGIRSDIELSGRKLRKALDYANRIGVRLSIIVGKRDLERGVVTIRDLESGNQVEVPVDNVVTKVRELLNQ 431          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_PYRKO (Histidyl-tRNA synthetase OS=Pyrococcus kodakaraensis GN=hisS PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.897e-23
Identity = 63/169 (37.28%), Postives = 98/169 (57.99%), Query Frame = -3
Query:  302 VVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEI 805
            V  DL +ARG DYYT V+FEAI      +GSI  GGRYDNLI +FG K  PA G ++GIER+  I+E         +R     + +G   +    A E+   L  A V+A+  +  +K+ K +D A +  +P++V+VG+++L  G V L+++ + +++ I +   VEEI
Sbjct:  262 VRIDLGIARGFDYYTSVVFEAIAPNDLGIGSIGGGGRYDNLIEVFGGKPTPATGFAIGIERLIPILEWKGLLPEIKLRPDVYVIPIGDDREVKKTAIEITQGLREATVRADIELTGRKLRKALDYAGKLGVPYVVLVGKKDLEAGKVTLRDMKSGEQKSIEKERAVEEI 430          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_PYRFU (Histidyl-tRNA synthetase OS=Pyrococcus furiosus GN=hisS PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.430e-22
Identity = 64/199 (32.16%), Postives = 111/199 (55.78%), Query Frame = -3
Query:  290 AKLALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATE--TQVLVGLLGDKL-PLAAELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 874
            AK  ++ L      LE  +  D +  DL +ARG DYYT ++FEAI      +GSI  GGRYDNLI +FG K  PA G ++GIER+  I+     E   +I   +    V V  +G+++  +A  + + L  + +K E  ++ +K+ K +D A +  +   +IVGE++L  G+V ++++++ ++  +   + VE ++  L
Sbjct:  237 AKNEINRLYALIDLLEAYEVKDWIRIDLGIARGFDYYTSIVFEAIAPNDLGIGSIGGGGRYDNLIEVFGGKPTPATGFAIGIERLIPIL-----EAKGLIPEVQIAPDVYVVPIGERMKKVAIRIATSLRKSGIKTEIELMGRKLKKAMDYANKVGVKKTIIVGEKDLERGVVTVRDMESGEQNEVKIDDIVEFMKNAL 430          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_PYRHO (Histidyl-tRNA synthetase OS=Pyrococcus horikoshii GN=hisS PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.174e-22
Identity = 66/205 (32.20%), Postives = 111/205 (54.15%), Query Frame = -3
Query:  284 ENSSAKLALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIME---QIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 886
            ++  AK  +  L      LE     D +  DL +ARG DYYT ++FEAI      +GSI  GGRYDNLI +FG K  PA G ++GIER+  I+E    I K +      T  +V V  L D   +A  +  +L   K+K +  +  +K+ K +D A       ++IVG+R++  G+V ++++++ ++  +S +  V++++  L +
Sbjct:  233 KSKKAKEEISKLYKLTDLLEWYGVKDWIRIDLGIARGFDYYTSIVFEAISPNELGIGSIGGGGRYDNLIEIFGGKPTPATGFAIGIERLLPILEWKGLIPKPQ------TGPEVFVIPLKDMEKVAINIAVKLRREKIKTDIELSGRKLGKALDYANRVGAKLVIIVGKRDVERGVVTIRDMESGEQYNVSLNEIVDKVKNLLKR 431          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_PARD8 (Histidyl-tRNA synthetase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=hisS PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.071e-22
Identity = 63/185 (34.05%), Postives = 104/185 (56.22%), Query Frame = -3
Query:  308 DLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPL-AAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVE 856
            +L+   + +  +    ++  DL+LARGL+YYTG IFE +     Q+GSI  GGRYDNL G+FG + V  VG S G +R+F ++ Q+       ++   TQ+L    G K  +    L++++  A ++ E Y    K+ K +  A   KIP++ IVGE E+ E  + LKN+ T ++ +++    +E
Sbjct:  268 ELDFILERISHTSIRAELELDLTLARGLNYYTGAIFE-VKALDVQIGSITGGGRYDNLTGVFGMEGVSGVGFSFGADRIFDVLNQLDLYPEGSLKT--TQLLFVNFGQKEEIHLLPLIAKVRKAGIRTELYPESTKMKKQMGYADAKKIPFVAIVGENEMAENKINLKNMLTGEQTLVTIEELIE 449          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_FLAJ1 (Histidyl-tRNA synthetase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=hisS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.235e-22
Identity = 59/155 (38.06%), Postives = 94/155 (60.65%), Query Frame = -3
Query:  338 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPL-AAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQE 796
            D++LARGL+YYTG IFE        +GSI  GGRYD+L G+FG K +  VG+S G++R++ ++E++Q    + + AT   + +   GDK  L A++ + +L    +K E Y  + KV K    A +  IP+ V+VG++E+N     LKN+ T ++
Sbjct:  309 DVTLARGLNYYTGAIFEVAAPKTVAMGSIGGGGRYDDLTGIFGLKNMSGVGISFGLDRIYLVLEELQL-FPETVAATSKAIFLN-FGDKEALYASKAIQKLRQENIKVELYPDNVKVGKQFQYADKRLIPFAVLVGDQEINSNSYALKNLVTGEQ 461          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_AZOPC (Histidyl-tRNA synthetase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=hisS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.235e-22
Identity = 63/190 (33.16%), Postives = 100/190 (52.63%), Query Frame = -3
Query:  299 LDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAEYMVHK-KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 862
            L ++E  F  L      + + FDL+LARGL+YYTG IFE        +GS+  GGRYDNL  +FG   +  VG+S G +R+F I+ Q+    N    A+ TQ+L   LG+K +     ++  L    + AE   H  K+ K +  A  ++IP++ IVG  E+ E  + +K++ +  +  I+    +   Q
Sbjct:  266 LQEIETIFNKLNLIPTRNTIKFDLTLARGLNYYTGTIFEVKCLNVP-IGSVLGGGRYDNLTNIFGLSNLSGVGISFGADRIFDILNQLNLYPN--TNASHTQILFVNLGEKGVDFILPVLFSLRKVGINAELYPHNTKIKKQLSYAHNNQIPFVAIVGSTEIAENKITIKDMRSCSQFSIALDKLINFFQ 452          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYHC_NOSCE (Probable histidyl-tRNA synthetase, cytoplasmic OS=Nosema ceranae (strain BRL01) GN=NCER_101238 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.021e-20
Identity = 67/202 (33.17%), Postives = 106/202 (52.48%), Query Frame = -3
Query:  299 ALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMF------GTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESK-------IPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 865
            A+DDL   ++  +  KC D ++ DLSLARGLDYYTG+I E  +     +GS+A GGRYDNLIG         T  VP  G S+G+ R+F+ +++ +   N  +  + +  L  LL ++L    ++ S LW A +  E   +K+     +   E K       I ++++V E + N+G V +  ++T  E VI   N    +Q
Sbjct:  241 AVDDLCKLYEYCKIMKCSDHLIIDLSLARGLDYYTGMIIEGKYLN-KNIGSVAGGGRYDNLIGSLENSSYTNTYNVPCAGFSIGLSRIFSCIQKPKVNTNVKVFISASGKL--LLEERL----KIQSILWEANISLETFYNKR-----NNPGEHKKYCVKHGIKYLIVVKEEQYNKGFVTVIEVNTNLENVIMIDNLPSHLQ 430          
The following BLAST results are available for this feature:
BLAST of CV884405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
SYH_CLOTE7.555e-2432.16Histidyl-tRNA synthetase OS=Clostridium tetani GN=... [more]
SYH_CYTH31.683e-2332.84Histidyl-tRNA synthetase OS=Cytophaga hutchinsonii... [more]
SYH_PYRAB2.871e-2335.43Histidyl-tRNA synthetase OS=Pyrococcus abyssi GN=h... [more]
SYH_PYRKO4.897e-2337.28Histidyl-tRNA synthetase OS=Pyrococcus kodakaraens... [more]
SYH_PYRFU2.430e-2232.16Histidyl-tRNA synthetase OS=Pyrococcus furiosus GN... [more]
SYH_PYRHO3.174e-2232.20Histidyl-tRNA synthetase OS=Pyrococcus horikoshii ... [more]
SYH_PARD87.071e-2234.05Histidyl-tRNA synthetase OS=Parabacteroides distas... [more]
SYH_FLAJ19.235e-2238.06Histidyl-tRNA synthetase OS=Flavobacterium johnson... [more]
SYH_AZOPC9.235e-2233.16Histidyl-tRNA synthetase OS=Azobacteroides pseudot... [more]
SYHC_NOSCE1.021e-2033.17Probable histidyl-tRNA synthetase, cytoplasmic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884405 ID=CV884405; Name=CV884405; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTCATCAAAATTCTTTAATTAAAATTCTCGAATCT
ATAAAATGACAACCATTATAATATCGGACAATTTCTACAGGGGAAAATGG
GAGAAAAAAACAAACAACAAATCATCTTCAATTCAATTTTTTACACGTTC
GTTACCAATTTGTCGAGATGCAGATATCAGACATGCCGTTGCAGCTAATG
ACATGCAGATTAATTGATATTCCAAGCGTTGTGTAACGTAGCAGAATGGC
TTAAAGTTGTGCTTCAACTAAATATTACGTTCATTGGTTCAATCGTCTTT
GAATTTCCTCAACAAAGTTACTTCTGGAAATAACCTCCTCTTGAGTGGTG
TCAATGTTCTTTAATTTTACTATTCCTTCATTCAGCTCGCGCTCACCCAC
AATTACCATCCAAGGGATTTTCGACTCCCTGGCACGATCAATGAGCTTCA
TCACTTTCTTATGGACCATGTATTCTGCTTTCACCTTGGCATTCCACAGC
TCGCTGACCAGTTCAGCAGCTAGAGGAAGTTTATCCCCGAGCAAGCCCAC
AAGTACTTGCGTCTCGGTGGCTCGAATTATCTGGTTCCTTTCTTTTTGAA
TCTGCTCCATTATAGTAAAGACTCGCTCAATTCCAAGACTGACACCAACT
GCAGGAACCTGCTTTGTACCAAACATTCCGATGAGGTTGTCATAACGTCC
ACCAGCTGCAATTGAACCAACCTGTGTGGCCCCTTTGAAAATGGCTTCAA
ATATGACACCAGTGTAATAGTCAAGACCTCTTGCAAGACTCAAATCAAAA
ACCACTTTATCAATGCACTTTGACTTTTCTAGAGCTTGAAAAAAAATTTC
AAGGTCATCCAATGCAAGTTTAGCTGAACTGTTTTCTAAAA
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