CV884405

Overview
NameCV884405
Unique NameCV884405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3337 contig Csv1_Contig3337:514..1404. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_FINM2 (Histidyl-tRNA synthetase OS=Finegoldia magna (strain ATCC 29328) GN=hisS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.334e-20
Identity = 54/202 (26.73%), Postives = 117/202 (57.92%), Query Frame = -3
Query:  299 LENSSAKLALDDLEIFFQ-ALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQ---VLVGLLGDKLPLAAELVSELWNAKVKA-EYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 889
            ++N      +++L+  +Q  L      + +  +LS+ RGLDYYTG +FE  FK   ++GSI +GGRYD+L   F   ++P VG+S+G+ R+F  ++++      +++  +T    +++ + G +   A +L+++L N+ VK   Y+   K+ K  + A +  + +++I+G+ E+ +    L+N++   +E++  +  +E+++
Sbjct:  236 IDNELFTCGVNELKFVYQDILSLGVNPENIKINLSITRGLDYYTGSVFETFFKDYREIGSICSGGRYDSLANNFTKSKLPGVGMSIGLTRLFYQLQEL-----NLVKGKQTNFDCIIIPMKGYE-KNAVKLMNDLRNSSVKCMSYLEDDKLKKKFNYADKLSVKYVIIIGQDEVEQNKFTLRNMENGNQELLELNEIIEKLK 431          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYHC_ENCCU (Probable histidyl-tRNA synthetase, cytoplasmic OS=Encephalitozoon cuniculi GN=ECU06_0620 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.971e-20
Identity = 71/202 (35.15%), Postives = 106/202 (52.48%), Query Frame = -3
Query:  284 KLALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQV--PAVGVSLGIERVFTIM-EQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE--YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 871
            K A+ D+E  F+      C   +V D+SLARGLDYYTG+I EA + G + VGS+  GGRYDNL    G + V  P VG S+G+ R+F+++ E+  KE       + T V VG  G   L     ++  L +A + +E  Y              + KIP++V+VGE E+  G V++ N  T ++E++     V  +    NQ
Sbjct:  242 KAAVHDMEELFRLCRILGCSGSLVMDISLARGLDYYTGMILEAEYVGKS-VGSVIGGGRYDNLTENLGERCVSTPCVGFSVGVSRIFSLLYEEYDKE-------SSTMVYVGASGGLFLDERLSVLRILQDANICSETFYTRRSSFESQQKYVAKKKIPFIVVVGESEIAAGSVQVINALTRKKEIVKVEQMVSYLLDPENQ 435          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_GRAFK (Histidyl-tRNA synthetase OS=Gramella forsetii (strain KT0803) GN=hisS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.067e-20
Identity = 59/185 (31.89%), Postives = 106/185 (57.30%), Query Frame = -3
Query:  338 NSSAKLALDDLEIFFQALEKSKC-IDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPL-AAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQE 883
            + + +  +++L+    A+E+    + K+  D++LARGL+YYTG IFE       ++GSI  GGRYD+L G+FG K +  +G+S G++R++ ++E++      +     T+VL    G+K  L A + V  L    + AE Y    K+ K +  A +  IP++V+ GE E+N+    LK++ + ++
Sbjct:  261 SETGQKGIEELQFIQNAIEEMPLSVAKLDLDVTLARGLNYYTGAIFEVAAPENVKMGSIGGGGRYDDLTGIFGLKDMSGIGISFGLDRIYLVLEELGLFPATV--TENTKVLFINFGEKEALYAMKAVKRLREENIIAELYPDSAKMGKQMKYADKRSIPYVVLAGEEEINDKKFTLKHMKSGEQ 443          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_PORGI (Histidyl-tRNA synthetase OS=Porphyromonas gingivalis GN=hisS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.618e-20
Identity = 60/180 (33.33%), Postives = 101/180 (56.11%), Query Frame = -3
Query:  329 LDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVL-VGLLGDKLPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVI 862
            +++L      +E+ +   +++ D+SLARGL YYTG I E     A ++GSI  GGRYDNL G+FG + +  VG+S G +R++ +M Q+     +  + T TQ+L V    +       L+ +L    ++ E Y    K+ K +  A  + IP++ +VGE E   G V LKN+ T +++++
Sbjct:  266 IEELTYILDKVERVQLHSELMVDISLARGLSYYTGAILEVKALDA-EMGSITGGGRYDNLTGIFGLEGMSGVGISFGADRIYDVMMQLDLFPAE--KLTGTQLLFVNFSEEDADSLLPLIQKLREQGLRTELYPEPAKIKKQMSYANAANIPYVALVGENERAAGQVNLKNMLTGEQQML 442          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_STRMK (Histidyl-tRNA synthetase OS=Stenotrophomonas maltophilia (strain K279a) GN=hisS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.515e-19
Identity = 57/175 (32.57%), Postives = 96/175 (54.86%), Query Frame = -3
Query:  284 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQI--IRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 796
            + S+ARGLDYYTG ++E       Q+GSI +GGRY++L   +   ++P VG+S+G+ R+F  +    +E   I  I  +  Q LV L+ ++ +P + ++   L    +  E  M  KK+ K    A ++ I ++V+ GE EL  G+V +K++   Q+  +SR      +Q  L Q
Sbjct:  290 NFSIARGLDYYTGTVYETTLTDHPQIGSICSGGRYEDLASHYSKSKLPGVGISIGLSRLFWQL----REAGLIDGIEGSSVQALVALMDEQGMPQSLDIARRLRAGGINTEVQMEPKKIGKQFQYAAKAGIRFVVLAGEDELARGVVAVKDLLREQQFEVSRDGLASTLQVELEQ 460          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_STRM5 (Histidyl-tRNA synthetase OS=Stenotrophomonas maltophilia (strain R551-3) GN=hisS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.603e-19
Identity = 57/175 (32.57%), Postives = 96/175 (54.86%), Query Frame = -3
Query:  284 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQI--IRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 796
            + S+ARGLDYYTG ++E       Q+GSI +GGRY++L   +   ++P VG+S+G+ R+F  +    +E   I  I A+  Q LV L+ ++ +P + ++   L    +  E  M  KK+ K    A ++ I ++V+ GE EL  G+V +K++   Q+  +SR      +   L Q
Sbjct:  290 NFSIARGLDYYTGTVYETTLTDHPQIGSICSGGRYEDLASHYSKSKLPGVGISIGLSRLFWQL----REAGLIDGIEASSVQALVALMDEQGMPQSLDIARRLRAGGINTEVQMEPKKIGKQFQYAAKAGIRFVVLAGEDELARGVVAVKDLLREQQFEVSRDELASTLLVELEQ 460          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_METJA (Histidyl-tRNA synthetase OS=Methanocaldococcus jannaschii GN=hisS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.557e-19
Identity = 64/167 (38.32%), Postives = 98/167 (58.68%), Query Frame = -3
Query:  329 DKVVFDLSLARGLDYYTGVIFEAIFK-GATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIME--QIQKERNQIIRATETQVLVG---LLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVI 811
            DK   +L +ARGLDYYTG++FE   K GA Q   I  GGRYDNLI  FG +  PAVG + G +R+   ++   I++E   II   + + L+    ++ DKL  A ++V EL         ++ +K+ K +D A       ++IVGE+ELNEG V +K++ T ++++I
Sbjct:  254 DKYTINLGIARGLDYYTGMVFEIYGKKGAKQ---ICGGGRYDNLIETFGGEPTPAVGFAYGFDRIMMNIDDLDIEEESILIIPVKKDKELIKKSLIIADKLRKAGKIV-EL--------EIMGRKLRKALDYANSRGFKKVIIVGEKELNEGKVTVKDMITGEQKLI 408          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_NITSB (Histidyl-tRNA synthetase OS=Nitratiruptor sp. (strain SB155-2) GN=hisS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.630e-18
Identity = 57/181 (31.49%), Postives = 101/181 (55.80%), Query Frame = -3
Query:  308 FQALEKSKCIDKVVFDL--SLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNA-KVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVE 841
            FQ L+     + +++++  +L RGLDYYT   FE +        ++A GGRYDNL+ M G K  PAVG ++GIER+  +++    +R       E   +  +L + L +A ++ ++L  + +V  EY   K +  L+  A  +   + +I+GE E NEG+V +K+++  +E+ +   NF+E
Sbjct:  233 FQTLKNLLDNEGIIYEVDENLVRGLDYYTRTAFEFVSNALGAQNAVAGGGRYDNLVEMLGGKPTPAVGFAIGIERILDLIKDKPVQR-------EGYFIGVMLPEALNIAFDIATKLRQSNRVIMEYK-PKSLKALLKGADRNNAKYALIIGEDEYNEGLVWIKDLERKEEKRVDIQNFME 405          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_KORCO (Histidyl-tRNA synthetase OS=Korarchaeum cryptofilum (strain OPF8) GN=hisS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.630e-18
Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = -3
Query:  620 LENSSAKLALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERV 889
            +EN   K+ALD LE  F  +      D++VFDLSL RGLDYYTG +FE       ++GS+A GGRYD LIG++  K VPA GVSLG+ER+
Sbjct:  233 IENDKVKVALDHLEEIFSIVSD----DRLVFDLSLVRGLDYYTGPVFETSVS-EPRIGSLAGGGRYDRLIGLYSGKDVPATGVSLGVERL 317          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_NOSP7 (Histidyl-tRNA synthetase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=hisS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.743e-18
Identity = 60/203 (29.56%), Postives = 103/203 (50.74%), Query Frame = -3
Query:  287 ENSSAKLALDDLEIFFQALEKSKCID-KVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVL-VGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVM-KLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 886
            E     L + +LE     +      + +   DLS+ARGLDYYTG ++E    G   +GSI +GGRY+ L+G+F  +++P VG+S+G+ R+  I   ++      + AT  QV+ V +  D +P   ++   L  A +       K+ + K    A +  I + VI+G  E       LK++ + ++  +   N  EE++RRL+
Sbjct:  270 ETEQLSLGISELETVIAGVRNLGVTENRFCIDLSIARGLDYYTGTVYETTLLGHEALGSICSGGRYEELVGVFLGEKMPGVGISIGLTRL--ISRLLKAGILSTLAATPAQVMVVNMQEDLMPTYLKVSQHLRQAGINVITNFDKRPLGKQFQLADKQGIQFCVIIGSEEAAAQKSSLKDLKSGEQVEVLLVNLAEEVKRRLS 470          
The following BLAST results are available for this feature:
BLAST of CV884405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
SYH_FINM21.334e-2026.73Histidyl-tRNA synthetase OS=Finegoldia magna (stra... [more]
SYHC_ENCCU2.971e-2035.15Probable histidyl-tRNA synthetase, cytoplasmic OS=... [more]
SYH_GRAFK5.067e-2031.89Histidyl-tRNA synthetase OS=Gramella forsetii (str... [more]
SYH_PORGI6.618e-2033.33Histidyl-tRNA synthetase OS=Porphyromonas gingival... [more]
SYH_STRMK2.515e-1932.57Histidyl-tRNA synthetase OS=Stenotrophomonas malto... [more]
SYH_STRM55.603e-1932.57Histidyl-tRNA synthetase OS=Stenotrophomonas malto... [more]
SYH_METJA9.557e-1938.32Histidyl-tRNA synthetase OS=Methanocaldococcus jan... [more]
SYH_NITSB1.630e-1831.49Histidyl-tRNA synthetase OS=Nitratiruptor sp. (str... [more]
SYH_KORCO1.630e-1853.33Histidyl-tRNA synthetase OS=Korarchaeum cryptofilu... [more]
SYH_NOSP74.743e-1829.56Histidyl-tRNA synthetase OS=Nostoc punctiforme (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884405 ID=CV884405; Name=CV884405; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTCATCAAAATTCTTTAATTAAAATTCTCGAATCT
ATAAAATGACAACCATTATAATATCGGACAATTTCTACAGGGGAAAATGG
GAGAAAAAAACAAACAACAAATCATCTTCAATTCAATTTTTTACACGTTC
GTTACCAATTTGTCGAGATGCAGATATCAGACATGCCGTTGCAGCTAATG
ACATGCAGATTAATTGATATTCCAAGCGTTGTGTAACGTAGCAGAATGGC
TTAAAGTTGTGCTTCAACTAAATATTACGTTCATTGGTTCAATCGTCTTT
GAATTTCCTCAACAAAGTTACTTCTGGAAATAACCTCCTCTTGAGTGGTG
TCAATGTTCTTTAATTTTACTATTCCTTCATTCAGCTCGCGCTCACCCAC
AATTACCATCCAAGGGATTTTCGACTCCCTGGCACGATCAATGAGCTTCA
TCACTTTCTTATGGACCATGTATTCTGCTTTCACCTTGGCATTCCACAGC
TCGCTGACCAGTTCAGCAGCTAGAGGAAGTTTATCCCCGAGCAAGCCCAC
AAGTACTTGCGTCTCGGTGGCTCGAATTATCTGGTTCCTTTCTTTTTGAA
TCTGCTCCATTATAGTAAAGACTCGCTCAATTCCAAGACTGACACCAACT
GCAGGAACCTGCTTTGTACCAAACATTCCGATGAGGTTGTCATAACGTCC
ACCAGCTGCAATTGAACCAACCTGTGTGGCCCCTTTGAAAATGGCTTCAA
ATATGACACCAGTGTAATAGTCAAGACCTCTTGCAAGACTCAAATCAAAA
ACCACTTTATCAATGCACTTTGACTTTTCTAGAGCTTGAAAAAAAATTTC
AAGGTCATCCAATGCAAGTTTAGCTGAACTGTTTTCTAAAA
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