CV884405

Overview
NameCV884405
Unique NameCV884405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_CAMJE (Histidyl-tRNA synthetase OS=Campylobacter jejuni GN=hisS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 53/166 (31.93%), Postives = 81/166 (48.80%), Query Frame = -3
Query:  317 KVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQK--ERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSN 808
            K   D  L RGLDYY+   FE I        +IA GGRYD LI   G K    +G ++GIER+ TI+EQ ++  +R  I      ++ +  L   L +A  L  E    KV   Y   +K+ K ++ A ++     + +GE E     +  KN+   +E++I  S+
Sbjct:  245 KFELDSKLVRGLDYYSKTAFEFISDEIGAKAAIAGGGRYDRLIEYLGGKSGYGIGFAMGIERIITILEQKEEKIQREGIYLCAMDEIYIQKL---LHIATNLRKEY---KVLLSYEA-RKLAKHLENADKNNTEIFLCMGENEAQNESLFYKNLAKKEEKMIKISD 403          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SULDN (Histidyl-tRNA synthetase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=hisS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.132e-11
Identity = 44/160 (27.50%), Postives = 81/160 (50.62%), Query Frame = -3
Query:  329 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMV----HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVI 796
            D +L RGLDYY+   FE +        +IA GGRYD L+     +  PAVG ++GIER+  ++  I  E      A +    +G + D+   A +++ ++   K K++ ++     K +   +  A +S   +  ++G  E+ +G + +KN++   E+ I
Sbjct:  250 DTNLVRGLDYYSKTAFEFVSDNIGSQSAIAGGGRYDRLVEFLDGRPTPAVGFAMGIERLMELI--IMPE------AKKDGYYLGAMDDE---ALDMIVKIAQKKRKSDIVILEYKTKNLKNHLKAADKSNAKYCAVIGSNEIKDGTIWVKNLEDKTEKTI 398          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_FRATO (Histidyl-tRNA synthetase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=hisS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.132e-11
Identity = 44/153 (28.76%), Postives = 76/153 (49.67%), Query Frame = -3
Query:  335 SLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVL-VGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEE 790
            +L RGLDYYTG++FE          +I AGGRYD L+   G +++ A+G ++G+ER+  ++E + K  NQ        +L    L   L +   +  EL   K+  + +          +A +S     +I+G+ EL+ G   +K +   +E+
Sbjct:  256 NLVRGLDYYTGLVFEWTTDKLGSQSAICAGGRYDGLVENLGGQKIAAIGFAIGMERLLLLLEDLGKLPNQDNACDVFFILDSAQLHQSLAIVENIRQELPQLKIDMD-LKFGSFKSQFKKADKSGAKVAIIIGQDELDNGFAGIKFLQQNEEQ 407          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_CHLFF (Histidyl-tRNA synthetase OS=Chlamydophila felis (strain Fe/C-56) GN=hisS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.132e-11
Identity = 50/167 (29.94%), Postives = 79/167 (47.31%), Query Frame = -3
Query:  290 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 787
            L RGLDYYT V+FEAI        ++  GGRYD L+   G    PA G  +G+ERV   M+ +  + N  + ++    L+ +              L    +  E    HKK+   +  A   K  ++ +VGEREL    + +K++ + QE     S   +E+++RL
Sbjct:  262 LVRGLDYYTDVVFEAITTFGGHSYALGGGGRYDGLVAASGGPSTPACGFGVGLERV---MQTLLAQGNITLPSSHKLRLIPVESQADSFCFIWAQHLRGLGIPTEIDWTHKKLKNALKTADAEKATFVCLVGERELLSEQLTIKDMSSRQE----FSGSKQEVEQRL 421          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_BACCN (Histidyl-tRNA synthetase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=hisS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.132e-11
Identity = 46/173 (26.59%), Postives = 91/173 (52.60%), Query Frame = -3
Query:  290 DLSLARGLDYYTGVIFEAIFK--GATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKL-PLAAELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 796
            D +L RGLDYY   +FE + +  G   + +++ GGRY+ L+   G  ++P +G ++ IER   ++  ++ E  ++         V  LGDK    AA++  +L  + +  E   +++K+      A      ++ ++GE EL++G++ LK++ T ++E ++   F   I  +L
Sbjct:  253 DPNLVRGLDYYQHTVFEIMSEAEGFGAITTLSGGGRYNGLVQEIGGPEMPGIGFAMSIER---LIMALKAENIELPIENTIDCYVVALGDKAKDHAAKVAFDLRKSGLSVEKDYLNRKMKAQFKSADRLNAKYVAVLGEDELDKGVINLKDMATGEQEEVALDVFASYIAEKL 422          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_AZOVD (Histidyl-tRNA synthetase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=hisS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.132e-11
Identity = 49/160 (30.63%), Postives = 80/160 (50.00%), Query Frame = -3
Query:  335 VFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAA-ELVSELWNAKVKAEYMVHK---KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEE 802
            V +  L RGLDYY   +FE +       G++ AGGRYD L+   G K  PAVG ++G+ER+  ++E +++   ++ R  +  V     G+   LAA  L   L +A       V+         + +A +S   + +++GE EL   IV LK++    E+
Sbjct:  253 VINPKLVRGLDYYGKTVFEWVTDKLGAQGTVCAGGRYDGLVEQLGGKPTPAVGFAMGVERLVLLLETLERVPAELSR--QVDVYFCAFGEAAELAALGLAERLRDALPGLRLAVNAGAGSFKSQLKKADKSGALYALVLGEDELAGRIVGLKSLRAEGEQ 410          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_VIBSL (Histidyl-tRNA synthetase OS=Vibrio splendidus (strain LGP32) GN=hisS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.478e-11
Identity = 45/165 (27.27%), Postives = 82/165 (49.70%), Query Frame = -3
Query:  302 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVH---KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEI 787
            L RGLDYY   +FE I       G++  GGRYD L+   G K   AVG ++G+ER+  +ME +  E  ++ R+ +  ++    G  +    +L ++L +       M H       K   RA +      +++GE E+ +  V LK++   +++ +S++   E++
Sbjct:  257 LVRGLDYYNRTVFEWITDSLGAQGTVCGGGRYDGLVEQLGGKATNAVGFAMGLERLVLMMETL--ELTEVRRSVDVYMVAAGEGTMI-AGMQLANQLRDTVEGVRVMNHFGGGNFKKQFKRADKVGAVVALVLGENEVADNTVVLKDLVGGEQQTVSQTEVAEKV 418          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_STRMU (Histidyl-tRNA synthetase OS=Streptococcus mutans GN=hisS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.478e-11
Identity = 55/182 (30.22%), Postives = 86/182 (47.25%), Query Frame = -3
Query:  326 DDLEIFFQAL-EKSKCID-KVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKL-PLAAELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVIS 859
            DD +  FQ + +  + +D   V D ++ RGLDYY   IFE I +      ++ AGGRYD+L+  FG       G  LG+ER+  +   I K++  +       V + +LG      A EL+  +      AE   + +K+      A   K   ++ +GE E+  G V +KN  T QE  +S
Sbjct:  231 DDSQAHFQGVRDMLEVLDIPYVIDTNMVRGLDYYNHTIFEFITQVDKSELTLCAGGRYDSLVEYFGGPATAGFGFGLGLERLLLV---IDKQKINLPVDNSLDVYIAVLGAAANSTALELIQAIRKQGFSAERDYLSRKIKAQFKSADVFKTKLIMTLGESEVETGQVAVKNNFTRQEIAVS 409          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_RHOPT (Histidyl-tRNA synthetase OS=Rhodopseudomonas palustris (strain TIE-1) GN=hisS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.478e-11
Identity = 57/192 (29.69%), Postives = 94/192 (48.96%), Query Frame = -3
Query:  353 NSSAKLALDDLEIFFQALEKSKC-IDKVVFDLSLARGLDYYTGVIFEAIF-------KGA-TQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAE-YMVHKK-----VMKLIDRARESKIPWMVIVGERELNEGIVKLKNI 883
            NS+    + DL    +  E S     ++  D ++ RGL+YYTG +FE          KG   + GS+  GGRYD L+  F  + VPA G S+G+ R+   +  I +  N   +     V+V + G ++    ++V+ L  A ++AE Y+ + K      MK  D+      P  +I G  E  +GIV++K++
Sbjct:  276 NSTFSAGIQDLRQITKITEASGYDTGRIRVDNTVVRGLEYYTGPVFEVELLLDTKDEKGRPVRFGSVGGGGRYDGLVSRFRGEPVPATGFSIGVSRLQAALTLIGQLGN---KPQAGPVVVTVFGGEIAGYQKMVATLRKAGIRAELYLGNPKHSLGQQMKYADKRNS---PCAIIQGSDEKQQGIVQIKDL 461          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_RHILW (Histidyl-tRNA synthetase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=hisS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.478e-11
Identity = 50/164 (30.49%), Postives = 84/164 (51.22%), Query Frame = -3
Query:  353 DKVVFDLSLARGLDYYTGVIFEAIF-------KGATQV-GSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQK-ERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMV--HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI 811
            D++  D S+ RGL+YYTG ++EA         KG   V GS+  GGRYD L+  F  + VPA G S+G+ R+ T ++ + K   +++I      V+ G + + +    ++  +L  A ++AE      KK    +  A     P  +I G  E   G+V++K++
Sbjct:  292 DRIKIDPSIVRGLEYYTGPVYEAELSFDVTNEKGEKVVFGSVGGGGRYDGLVSRFMGQPVPATGFSIGVSRLMTALKNLGKLGASEVIEPVLVTVMDGDV-EAMGRYQKMTQDLRAAGIRAEMFQGNWKKFGNQLKYADRRGCPVAIIQGGDERATGVVQIKDL 454          
The following BLAST results are available for this feature:
BLAST of CV884405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
SYH_CAMJE8.664e-1231.93Histidyl-tRNA synthetase OS=Campylobacter jejuni G... [more]
SYH_SULDN1.132e-1127.50Histidyl-tRNA synthetase OS=Sulfurimonas denitrifi... [more]
SYH_FRATO1.132e-1128.76Histidyl-tRNA synthetase OS=Francisella tularensis... [more]
SYH_CHLFF1.132e-1129.94Histidyl-tRNA synthetase OS=Chlamydophila felis (s... [more]
SYH_BACCN1.132e-1126.59Histidyl-tRNA synthetase OS=Bacillus cereus subsp.... [more]
SYH_AZOVD1.132e-1130.63Histidyl-tRNA synthetase OS=Azotobacter vinelandii... [more]
SYH_VIBSL1.478e-1127.27Histidyl-tRNA synthetase OS=Vibrio splendidus (str... [more]
SYH_STRMU1.478e-1130.22Histidyl-tRNA synthetase OS=Streptococcus mutans G... [more]
SYH_RHOPT1.478e-1129.69Histidyl-tRNA synthetase OS=Rhodopseudomonas palus... [more]
SYH_RHILW1.478e-1130.49Histidyl-tRNA synthetase OS=Rhizobium leguminosaru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884405 ID=CV884405; Name=CV884405; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTCATCAAAATTCTTTAATTAAAATTCTCGAATCT
ATAAAATGACAACCATTATAATATCGGACAATTTCTACAGGGGAAAATGG
GAGAAAAAAACAAACAACAAATCATCTTCAATTCAATTTTTTACACGTTC
GTTACCAATTTGTCGAGATGCAGATATCAGACATGCCGTTGCAGCTAATG
ACATGCAGATTAATTGATATTCCAAGCGTTGTGTAACGTAGCAGAATGGC
TTAAAGTTGTGCTTCAACTAAATATTACGTTCATTGGTTCAATCGTCTTT
GAATTTCCTCAACAAAGTTACTTCTGGAAATAACCTCCTCTTGAGTGGTG
TCAATGTTCTTTAATTTTACTATTCCTTCATTCAGCTCGCGCTCACCCAC
AATTACCATCCAAGGGATTTTCGACTCCCTGGCACGATCAATGAGCTTCA
TCACTTTCTTATGGACCATGTATTCTGCTTTCACCTTGGCATTCCACAGC
TCGCTGACCAGTTCAGCAGCTAGAGGAAGTTTATCCCCGAGCAAGCCCAC
AAGTACTTGCGTCTCGGTGGCTCGAATTATCTGGTTCCTTTCTTTTTGAA
TCTGCTCCATTATAGTAAAGACTCGCTCAATTCCAAGACTGACACCAACT
GCAGGAACCTGCTTTGTACCAAACATTCCGATGAGGTTGTCATAACGTCC
ACCAGCTGCAATTGAACCAACCTGTGTGGCCCCTTTGAAAATGGCTTCAA
ATATGACACCAGTGTAATAGTCAAGACCTCTTGCAAGACTCAAATCAAAA
ACCACTTTATCAATGCACTTTGACTTTTCTAGAGCTTGAAAAAAAATTTC
AAGGTCATCCAATGCAAGTTTAGCTGAACTGTTTTCTAAAA
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