CV884405

Overview
NameCV884405
Unique NameCV884405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_AERS4 (Histidyl-tRNA synthetase OS=Aeromonas salmonicida (strain A449) GN=hisS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.930e-11
Identity = 49/155 (31.61%), Postives = 77/155 (49.68%), Query Frame = -3
Query:  335 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAA-ELVSELWNAKVKAEYMVH---KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEE 787
            L RGLDYY   +FE +       G++ AGGRYD L+   G +  PAVG ++G+ER+  ++E +  E N  IR     V + ++G+    A  +L   L +A      M H       K + RA +S     +I+GE E+  G + +K +    E+
Sbjct:  257 LVRGLDYYNLTVFEWVTTSLGAQGTVCAGGRYDGLVEQLGGQATPAVGFAMGMERLVLMLETL--ELNADIRPA-VDVYLAMVGEGSEQAGFQLAERLRDALPDLRLMSHCGGGNFKKQLKRADKSGAAIALILGETEVQNGEITIKYLRGQAEQ 408          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_TREPS (Histidyl-tRNA synthetase OS=Treponema pallidum subsp. pallidum (strain SS14) GN=hisS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.521e-11
Identity = 44/174 (25.29%), Postives = 86/174 (49.43%), Query Frame = -3
Query:  290 VFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERE--LNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 802
            VFD S+ RG DYYTG++ E        +GS+ +GGRYD+L  ++    V  VG S+G++R++   +Q+   R  +      Q L+      L    + +   +  +V  E +   +K+ +    A +  I W + V +R   + + ++ L+++ T ++  +       E++RR+
Sbjct:  272 VFDPSITRGFDYYTGMVCETFLTQLPHIGSVCSGGRYDHLTALYMKDAVSGVGASIGLDRLYAAFQQLGMSREHV---CFVQALIFCQDSALMDVYQKLCSYFAVQVATEVFPDPRKLSQQYAFAEKKGIRWGIFVEQRNAVVEDCLLVLRDLSTRKDTRLP----AHEVRRRM 438          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_TREPA (Histidyl-tRNA synthetase OS=Treponema pallidum GN=hisS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.521e-11
Identity = 44/174 (25.29%), Postives = 86/174 (49.43%), Query Frame = -3
Query:  290 VFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERE--LNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 802
            VFD S+ RG DYYTG++ E        +GS+ +GGRYD+L  ++    V  VG S+G++R++   +Q+   R  +      Q L+      L    + +   +  +V  E +   +K+ +    A +  I W + V +R   + + ++ L+++ T ++  +       E++RR+
Sbjct:  272 VFDPSITRGFDYYTGMVCETFLTQLPHIGSVCSGGRYDHLTALYMKDAVSGVGASIGLDRLYAAFQQLGMSREHV---CFVQALIFCQDSALMDVYQKLCSYFAVQVATEVFPDPRKLSQQYAFAEKKGIRWGIFVEQRNAVVEDCLLVLRDLSTRKDTRLP----AHEVRRRM 438          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_STACT (Histidyl-tRNA synthetase OS=Staphylococcus carnosus (strain TM300) GN=hisS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.521e-11
Identity = 51/201 (25.37%), Postives = 98/201 (48.76%), Query Frame = -3
Query:  293 SSAKLALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAA---GGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLP-LAAELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRR 880
            +  K  LDDL I +            V D +L RGLDYYT   FE +       G+I     GGRY+ L+ +    +   +G +L IER+   +E+   E  +I       + +  +G+K    A  L+++L +  +KA+   + +K+   + +A      + +++GE+EL +G + +K++D+ + + I  ++ V   + +
Sbjct:  236 NQVKQYLDDLNIPY------------VEDPNLVRGLDYYTHTAFELMIDSPDYDGAITTLCGGGRYNGLLELLDGPKQTGIGFALSIERLLLALEE---EGIEIEEDEHLDLFIVTMGEKADRYAVNLLNDLRHHGIKADKDYLKRKIKGQMKQANRVGAEYTIVIGEQELEDGNIDIKHMDSGETDSIHLADLVSYFENK 421          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_FRATW (Histidyl-tRNA synthetase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=hisS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.521e-11
Identity = 44/153 (28.76%), Postives = 75/153 (49.02%), Query Frame = -3
Query:  335 SLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVL-VGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEE 790
            +L RGLDYYTG++FE          +I AGGRYD L+   G ++  A+G ++G+ER+  ++E + K  NQ        +L    L   L +   +  EL   K+  + +          +A +S     +I+G+ EL+ G   +K +   +E+
Sbjct:  256 NLVRGLDYYTGLVFEWTTDKLGSQSAICAGGRYDGLVENLGGQKTAAIGFAIGMERLLLLLEDLGKLPNQDNACDVFFILDSAQLHQSLAIVENIRQELPQLKIDMD-LKFGSFKSQFKKADKSGAKVAIIIGQDELDNGFAGIKFLQQNEEQ 407          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_FRATT (Histidyl-tRNA synthetase OS=Francisella tularensis subsp. tularensis GN=hisS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.521e-11
Identity = 44/153 (28.76%), Postives = 75/153 (49.02%), Query Frame = -3
Query:  335 SLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVL-VGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEE 790
            +L RGLDYYTG++FE          +I AGGRYD L+   G ++  A+G ++G+ER+  ++E + K  NQ        +L    L   L +   +  EL   K+  + +          +A +S     +I+G+ EL+ G   +K +   +E+
Sbjct:  256 NLVRGLDYYTGLVFEWTTDKLGSQSAICAGGRYDGLVENLGGQKTAAIGFAIGMERLLLLLEDLGKLPNQDNACDVFFILDSAQLHQSLAIVENIRQELPQLKIDMD-LKFGSFKSQFKKADKSGAKVAIIIGQDELDNGFAGIKFLQQNEEQ 407          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_FRATN (Histidyl-tRNA synthetase OS=Francisella tularensis subsp. novicida (strain U112) GN=hisS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.521e-11
Identity = 44/153 (28.76%), Postives = 75/153 (49.02%), Query Frame = -3
Query:  335 SLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVL-VGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEE 790
            +L RGLDYYTG++FE          +I AGGRYD L+   G ++  A+G ++G+ER+  ++E + K  NQ        +L    L   L +   +  EL   K+  + +          +A +S     +I+G+ EL+ G   +K +   +E+
Sbjct:  256 NLVRGLDYYTGLVFEWTTDKLGSQSAICAGGRYDGLVENLGGQKTAAIGFAIGMERLLLLLEDLGKLPNQDNACDVFFILDSAQLHQSLAIVENIRQELPQLKIDMD-LKFGSFKSQFKKADKSGAKVAIIIGQDELDNGFAGIKFLQQNEEQ 407          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_FRATM (Histidyl-tRNA synthetase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=hisS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.521e-11
Identity = 44/153 (28.76%), Postives = 75/153 (49.02%), Query Frame = -3
Query:  335 SLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVL-VGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEE 790
            +L RGLDYYTG++FE          +I AGGRYD L+   G ++  A+G ++G+ER+  ++E + K  NQ        +L    L   L +   +  EL   K+  + +          +A +S     +I+G+ EL+ G   +K +   +E+
Sbjct:  256 NLVRGLDYYTGLVFEWTTDKLGSQSAICAGGRYDGLVENLGGQKTAAIGFAIGMERLLLLLEDLGKLPNQDNACDVFFILDSAQLHQSLAIVENIRQELPQLKIDMD-LKFGSFKSQFKKADKSGAKVAIIIGQDELDNGFAGIKFLQQNEEQ 407          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_FRATF (Histidyl-tRNA synthetase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=hisS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.521e-11
Identity = 44/153 (28.76%), Postives = 75/153 (49.02%), Query Frame = -3
Query:  335 SLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVL-VGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEE 790
            +L RGLDYYTG++FE          +I AGGRYD L+   G ++  A+G ++G+ER+  ++E + K  NQ        +L    L   L +   +  EL   K+  + +          +A +S     +I+G+ EL+ G   +K +   +E+
Sbjct:  256 NLVRGLDYYTGLVFEWTTDKLGSQSAICAGGRYDGLVENLGGQKTAAIGFAIGMERLLLLLEDLGKLPNQDNACDVFFILDSAQLHQSLAIVENIRQELPQLKIDMD-LKFGSFKSQFKKADKSGAKVAIIIGQDELDNGFAGIKFLQQNEEQ 407          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_FRAT1 (Histidyl-tRNA synthetase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=hisS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.521e-11
Identity = 44/153 (28.76%), Postives = 75/153 (49.02%), Query Frame = -3
Query:  335 SLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVL-VGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEE 790
            +L RGLDYYTG++FE          +I AGGRYD L+   G ++  A+G ++G+ER+  ++E + K  NQ        +L    L   L +   +  EL   K+  + +          +A +S     +I+G+ EL+ G   +K +   +E+
Sbjct:  256 NLVRGLDYYTGLVFEWTTDKLGSQSAICAGGRYDGLVENLGGQKTAAIGFAIGMERLLLLLEDLGKLPNQDNACDVFFILDSAQLHQSLAIVENIRQELPQLKIDMD-LKFGSFKSQFKKADKSGAKVAIIIGQDELDNGFAGIKFLQQNEEQ 407          
The following BLAST results are available for this feature:
BLAST of CV884405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
SYH_AERS41.930e-1131.61Histidyl-tRNA synthetase OS=Aeromonas salmonicida ... [more]
SYH_TREPS2.521e-1125.29Histidyl-tRNA synthetase OS=Treponema pallidum sub... [more]
SYH_TREPA2.521e-1125.29Histidyl-tRNA synthetase OS=Treponema pallidum GN=... [more]
SYH_STACT2.521e-1125.37Histidyl-tRNA synthetase OS=Staphylococcus carnosu... [more]
SYH_FRATW2.521e-1128.76Histidyl-tRNA synthetase OS=Francisella tularensis... [more]
SYH_FRATT2.521e-1128.76Histidyl-tRNA synthetase OS=Francisella tularensis... [more]
SYH_FRATN2.521e-1128.76Histidyl-tRNA synthetase OS=Francisella tularensis... [more]
SYH_FRATM2.521e-1128.76Histidyl-tRNA synthetase OS=Francisella tularensis... [more]
SYH_FRATF2.521e-1128.76Histidyl-tRNA synthetase OS=Francisella tularensis... [more]
SYH_FRAT12.521e-1128.76Histidyl-tRNA synthetase OS=Francisella tularensis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884405 ID=CV884405; Name=CV884405; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTCATCAAAATTCTTTAATTAAAATTCTCGAATCT
ATAAAATGACAACCATTATAATATCGGACAATTTCTACAGGGGAAAATGG
GAGAAAAAAACAAACAACAAATCATCTTCAATTCAATTTTTTACACGTTC
GTTACCAATTTGTCGAGATGCAGATATCAGACATGCCGTTGCAGCTAATG
ACATGCAGATTAATTGATATTCCAAGCGTTGTGTAACGTAGCAGAATGGC
TTAAAGTTGTGCTTCAACTAAATATTACGTTCATTGGTTCAATCGTCTTT
GAATTTCCTCAACAAAGTTACTTCTGGAAATAACCTCCTCTTGAGTGGTG
TCAATGTTCTTTAATTTTACTATTCCTTCATTCAGCTCGCGCTCACCCAC
AATTACCATCCAAGGGATTTTCGACTCCCTGGCACGATCAATGAGCTTCA
TCACTTTCTTATGGACCATGTATTCTGCTTTCACCTTGGCATTCCACAGC
TCGCTGACCAGTTCAGCAGCTAGAGGAAGTTTATCCCCGAGCAAGCCCAC
AAGTACTTGCGTCTCGGTGGCTCGAATTATCTGGTTCCTTTCTTTTTGAA
TCTGCTCCATTATAGTAAAGACTCGCTCAATTCCAAGACTGACACCAACT
GCAGGAACCTGCTTTGTACCAAACATTCCGATGAGGTTGTCATAACGTCC
ACCAGCTGCAATTGAACCAACCTGTGTGGCCCCTTTGAAAATGGCTTCAA
ATATGACACCAGTGTAATAGTCAAGACCTCTTGCAAGACTCAAATCAAAA
ACCACTTTATCAATGCACTTTGACTTTTCTAGAGCTTGAAAAAAAATTTC
AAGGTCATCCAATGCAAGTTTAGCTGAACTGTTTTCTAAAA
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