CV884405

Overview
NameCV884405
Unique NameCV884405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_VIBVU (Histidyl-tRNA synthetase OS=Vibrio vulnificus GN=hisS PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 46/165 (27.88%), Postives = 78/165 (47.27%), Query Frame = -3
Query:  302 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVH---KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEI 787
            L RGLDYY   +FE I +     G++  GGRYD L+   G K  PAVG ++G+ER+  ++E +  E   + R+ +  V+    G  +    +L  ++  A      M H       K   RA +      +++GE E+ +  V LK++   ++   S+     +I
Sbjct:  257 LVRGLDYYNRTVFEWITESLGSQGTVCGGGRYDGLVEQLGGKATPAVGFAMGLERLVLMLETL--ELTDVRRSVDVYVVTAGEGTMM-AGMKLAEQVREAIPGVRVMNHFGGGNFKKQFKRADKVGAVVALVLGENEVADNTVVLKDLAGGEQVTYSQQEIASKI 418          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_THISH (Histidyl-tRNA synthetase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=hisS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 54/180 (30.00%), Postives = 81/180 (45.00%), Query Frame = -3
Query:  290 SLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIME------QIQKERNQIIRATETQVLVGL-----LGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTT--QEEVISRSNFVEEIQRRL 790
            +L RGLDYY   +FE I +     G++ AGGRYD L+   G +  PA G ++G+ER+  ++E         K    +  A E     GL     L D LP    LV        KA+          I RA  S     +I+GE EL EG + +K +     +++ + R    E ++ R+
Sbjct:  255 ALVRGLDYYCRTVFEWITESLGAQGTVCAGGRYDGLVEQLGGRATPAAGFAMGLERLLALVEAGGARPPAPKPHAYLALAGEGTQAEGLRLAESLRDALP-GLRLVVNGGGGGFKAQ----------IKRADRSGADLALIIGESELAEGTILVKPLREAGGEQQAVPRDGLAEFLRARI 423          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SYNP6 (Histidyl-tRNA synthetase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=hisS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 49/165 (29.70%), Postives = 80/165 (48.48%), Query Frame = -3
Query:  305 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVG----LLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEE 787
            L RGLDYYT   FE I        ++  GGRYD L+   G  + PAVG ++G+ER+  +++Q Q     +  AT    LV       G  L LA +L S  +  ++        K  K  DR   S     +++G+ E  +G V LK + + +++ + +S  +++
Sbjct:  256 LVRGLDYYTHTAFEIISSDLGAQATVCGGGRYDGLVSQLGGPETPAVGWAMGLERLVLLLQQGQ----AVPPATLDFYLVSRGAIAEGQALILAQKLRSAGFGVELDLSGSAFGKQFKRADR---SGAIACLVLGDAEAEQGQVNLKWLQSGEQQTLDQSELLQD 413          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SYNE7 (Histidyl-tRNA synthetase OS=Synechococcus elongatus (strain PCC 7942) GN=hisS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 49/165 (29.70%), Postives = 80/165 (48.48%), Query Frame = -3
Query:  305 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVG----LLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEE 787
            L RGLDYYT   FE I        ++  GGRYD L+   G  + PAVG ++G+ER+  +++Q Q     +  AT    LV       G  L LA +L S  +  ++        K  K  DR   S     +++G+ E  +G V LK + + +++ + +S  +++
Sbjct:  256 LVRGLDYYTHTAFEIISSDLGAQATVCGGGRYDGLVSQLGGPETPAVGWAMGLERLVLLLQQGQ----AVPPATLDFYLVSRGAIAEGQALILAQKLRSAGFGVELDLSGSAFGKQFKRADR---SGAIACLVLGDAEAEQGQVNLKWLQSGEQQTLDQSELLQD 413          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_RICFE (Histidyl-tRNA synthetase OS=Rickettsia felis GN=hisS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 52/191 (27.23%), Postives = 91/191 (47.64%), Query Frame = -3
Query:  296 DDLEIFFQALEKSKCI--DKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTK-QVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQR 859
            D+ + +F+ L K   I   K V +  L RGLDYY    FE   K      +I AGGRYD L  + G    VPA+G + GIER+      + +E N  I   +   ++ +  + +  A E+V +L    +        K+ K I R       +++ +G+ E     +KLK+++  +E ++  +  +E +++
Sbjct:  231 DESKEYFEELIKYLDILGVKYVINPRLVRGLDYYCHTAFEFTTKKLGSQSTILAGGRYDGLAKIMGNNDDVPAIGFAAGIERI-----ALMREYN--ISEVKPVFVLPIGENNICYALEIVDKLRLQNISTIIDPVGKIAKRIQRVLNENAKFIIFIGDEEQANNSLKLKDLEKKEEYIVDFAKVLELLKK 414          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_RHIL3 (Histidyl-tRNA synthetase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=hisS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 50/164 (30.49%), Postives = 83/164 (50.61%), Query Frame = -3
Query:  353 DKVVFDLSLARGLDYYTGVIFEAIF-------KGATQV-GSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQK-ERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMV--HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI 811
            D++  D S+ RGL+YYTG ++EA         KG   V GS+  GGRYD L+  F  + VPA G S+G+ R+ T ++ + K   +++I      V+ G + + +    ++  EL  A ++AE      KK    +  A     P  +I G  E    +V++K++
Sbjct:  292 DRIKIDPSVVRGLEYYTGPVYEAELTFDVTNEKGEKVVFGSVGGGGRYDGLVSRFMGQPVPATGFSIGVSRLMTALKNLGKLGASEVIEPVLVTVMDGDV-EAMGRYQKMTQELRAAGIRAEMFQGNWKKFGNQLKYADRRGCPVAIIQGGDERATSVVQIKDL 454          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_PSEFS (Histidyl-tRNA synthetase OS=Pseudomonas fluorescens (strain SBW25) GN=hisS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 47/155 (30.32%), Postives = 78/155 (50.32%), Query Frame = -3
Query:  359 VFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSEL-------WNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLK 802
            V +  L RGLDYY+  +FE + +     G++ AGGRYD L+   G K    VG ++GIER+  ++E +++   +I R  +  V +   G+   LAA  +SE           ++ A     K   K   +A +S   + +I+GE EL + ++  K
Sbjct:  253 VINPKLVRGLDYYSKTVFEWVTEKLGAQGTVCAGGRYDGLVEQMGGKPTTGVGFAMGIERLILLLETLEQVPEEISR--QVDVYLCAFGEAAELAALALSEKVRDQLPNLRLQINAGAGSFKSQFK---KADKSGALYALILGEDELAQQVIGFK 402          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_MYCGE (Histidyl-tRNA synthetase OS=Mycoplasma genitalium GN=hisS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 53/160 (33.12%), Postives = 84/160 (52.50%), Query Frame = -3
Query:  332 SLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSEL-WNAKVKAEY---MVHKKVMKL---IDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEV 790
            +L RGLDYYTG +FE +    T    I AGG YDNL+    +   PA+G + GIER+   +E  +K    I+     Q+LV      + L  E + EL W AK+  EY    ++ KV+K+   I  A      ++ IVG+ + ++  + +KN+ + Q+ +
Sbjct:  255 NLVRGLDYYTGFVFEYVKNQDT----ILAGGVYDNLVEELSSNPTPALGFACGIERLINCLEIDKKA--FILNTKPKQMLV------ICLFEEALEELVWLAKLWREYNQVTIYPKVIKVDNGIRLANRLGYTFIGIVGKTDFDKKAITIKNLVSKQQTI 402          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_METLZ (Histidyl-tRNA synthetase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=hisS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 52/173 (30.06%), Postives = 82/173 (47.40%), Query Frame = -3
Query:  302 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDR--------ARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEI 796
            +  +ARGLDYYTG++FE           I  GG Y  L  +FG K VP+ G  +G +RV   + +I  +   ++    T         ++P A    S L +A + A       VM L+DR        A +S   + V++GE+E   G++ LK++ T  +  +S  N +E I
Sbjct:  248 NFGIARGLDYYTGMVFEGFADNLGAENQILGGGVY-RLAHLFGGKDVPSCGFGIGFDRVLVSLGEITPQTIPVVAVICTP------ETRIP-AYNAASALRSAGITA-------VMDLLDRGFGAQLSSALKSGASFAVVIGEKEAAAGMITLKDLATAVQTEMSIDNAIEVI 405          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_COREF (Histidyl-tRNA synthetase OS=Corynebacterium efficiens GN=hisS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 47/167 (28.14%), Postives = 79/167 (47.31%), Query Frame = -3
Query:  290 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMK-LIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 787
            + RGLDYYT   FE I  G      I  GGRYD L+   G + +  +G  LG++R    +E       Q  R     V +G    K    A ++++L  A + A+     + +K  +  A  S   + +++GE EL+ G V +K++    ++ I+ S  V  ++ +L
Sbjct:  264 MVRGLDYYTKTTFEFIHDGLGAQSGIGGGGRYDGLMAQLGGQDLSGIGYGLGVDRTILALEAEGVTVGQERRVDVYGVPLGQAAKK--AMAGIINDLRAAGISADMSYGDRGLKGAMKGADRSGSLYTLVLGENELDNGTVAVKDMRAHDQQDIALSEVVSALRAKL 428          
The following BLAST results are available for this feature:
BLAST of CV884405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
SYH_VIBVU4.300e-1127.88Histidyl-tRNA synthetase OS=Vibrio vulnificus GN=h... [more]
SYH_THISH4.300e-1130.00Histidyl-tRNA synthetase OS=Thioalkalivibrio sp. (... [more]
SYH_SYNP64.300e-1129.70Histidyl-tRNA synthetase OS=Synechococcus sp. (str... [more]
SYH_SYNE74.300e-1129.70Histidyl-tRNA synthetase OS=Synechococcus elongatu... [more]
SYH_RICFE4.300e-1127.23Histidyl-tRNA synthetase OS=Rickettsia felis GN=hi... [more]
SYH_RHIL34.300e-1130.49Histidyl-tRNA synthetase OS=Rhizobium leguminosaru... [more]
SYH_PSEFS4.300e-1130.32Histidyl-tRNA synthetase OS=Pseudomonas fluorescen... [more]
SYH_MYCGE4.300e-1133.13Histidyl-tRNA synthetase OS=Mycoplasma genitalium ... [more]
SYH_METLZ4.300e-1130.06Histidyl-tRNA synthetase OS=Methanocorpusculum lab... [more]
SYH_COREF4.300e-1128.14Histidyl-tRNA synthetase OS=Corynebacterium effici... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884405 ID=CV884405; Name=CV884405; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTCATCAAAATTCTTTAATTAAAATTCTCGAATCT
ATAAAATGACAACCATTATAATATCGGACAATTTCTACAGGGGAAAATGG
GAGAAAAAAACAAACAACAAATCATCTTCAATTCAATTTTTTACACGTTC
GTTACCAATTTGTCGAGATGCAGATATCAGACATGCCGTTGCAGCTAATG
ACATGCAGATTAATTGATATTCCAAGCGTTGTGTAACGTAGCAGAATGGC
TTAAAGTTGTGCTTCAACTAAATATTACGTTCATTGGTTCAATCGTCTTT
GAATTTCCTCAACAAAGTTACTTCTGGAAATAACCTCCTCTTGAGTGGTG
TCAATGTTCTTTAATTTTACTATTCCTTCATTCAGCTCGCGCTCACCCAC
AATTACCATCCAAGGGATTTTCGACTCCCTGGCACGATCAATGAGCTTCA
TCACTTTCTTATGGACCATGTATTCTGCTTTCACCTTGGCATTCCACAGC
TCGCTGACCAGTTCAGCAGCTAGAGGAAGTTTATCCCCGAGCAAGCCCAC
AAGTACTTGCGTCTCGGTGGCTCGAATTATCTGGTTCCTTTCTTTTTGAA
TCTGCTCCATTATAGTAAAGACTCGCTCAATTCCAAGACTGACACCAACT
GCAGGAACCTGCTTTGTACCAAACATTCCGATGAGGTTGTCATAACGTCC
ACCAGCTGCAATTGAACCAACCTGTGTGGCCCCTTTGAAAATGGCTTCAA
ATATGACACCAGTGTAATAGTCAAGACCTCTTGCAAGACTCAAATCAAAA
ACCACTTTATCAATGCACTTTGACTTTTCTAGAGCTTGAAAAAAAATTTC
AAGGTCATCCAATGCAAGTTTAGCTGAACTGTTTTCTAAAA
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