CV884405

Overview
NameCV884405
Unique NameCV884405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_BLOFL (Histidyl-tRNA synthetase OS=Blochmannia floridanus GN=hisS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 50/173 (28.90%), Postives = 87/173 (50.29%), Query Frame = -3
Query:  287 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGL--LGDKLPLAAELVSELWNAKVK-AEYMVH---KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLN 787
            L RGLDYY   +FE +        +I AGGRYD+LI   G   +PAVG ++G+ERV  +M+ I   ++ II      + V L  LG      +  +SE    K+     MV        + IDRA ++   ++++V ++   E  + LK + + ++E++     + ++++  N
Sbjct:  263 LVRGLDYYNRTVFEWVTDKLGVKKTICAGGRYDDLIKQLGGGSIPAVGFAIGLERVVLLMKLI---KSSIINTRNVYIDVYLIRLGTYYQEYSIKLSEHIREKLPFLRLMVDCGGGNFKQQIDRAEKNNSRFVIVVDDKNFFEQTIILKELQSKKQEILKYDEIILKLRKIYN 432          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_METFK (Histidyl-tRNA synthetase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=hisS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.616e-11
Identity = 53/173 (30.64%), Postives = 86/173 (49.71%), Query Frame = -3
Query:  302 KVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVL-VGLLGDK--LPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI-DTTQEEVISRSNFVEEI 808
            K   +  L RGLDYY   +FE +       G+IA GGRYD+L+   G K+ PA G  +G+ERVF +M +   E      + +  ++ VG   +K  LP+A  L     +  + A     K  MK   +A +S   + +I+G+ E+    V LK + +  ++  +S S  +E +
Sbjct:  251 KWTLNTRLVRGLDYYNRTVFEWVTNKLGSQGTIAGGGRYDSLVQSLGGKETPACGFGIGLERVFLLMRECGIE---AFHSPDVYLVNVGDAANKAALPIAEALRDSGLSVSLHAGGGSFKSQMK---KADQSGAQYALILGDDEIAANEVCLKPLRENGEQRRMSLSQAIEAL 417          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_LACPL (Histidyl-tRNA synthetase OS=Lactobacillus plantarum GN=hisS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.616e-11
Identity = 55/181 (30.39%), Postives = 88/181 (48.62%), Query Frame = -3
Query:  284 DLSLARGLDYYTGVIFE------AIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQV---LVGLLGDKLPLAAELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 796
            D ++ RGLDYY   IFE      A+ KG T   +I AGGRY+ L+   G  +V  VG  LG+ER+  +M     +   I   T+ Q+   +VG+         +LV  L  A  KAE   + +K       A      + + VGE EL + +V LK + T +E  ++ ++  ++  + L++
Sbjct:  254 DATMVRGLDYYNHTIFEIMTHSKALGKGYT---TICAGGRYNGLVKELGGPEVSGVGFGLGVERLLVLM-----DAENIAVPTDDQLDVYVVGIGDTASATTLKLVQALRAAGYKAERDYLDRKPKAQFKSADRLNARYTMTVGETELADQVVNLKAMATGEETKVAMADIYQDAHQVLDK 426          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_EHRRW (Histidyl-tRNA synthetase OS=Ehrlichia ruminantium (strain Welgevonden) GN=hisS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.616e-11
Identity = 42/171 (24.56%), Postives = 83/171 (48.54%), Query Frame = -3
Query:  290 VFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 802
            V + ++ RGLDYY   +FE          S+ AGGRYD L+   G    PA+G + G+ER+  +++   K+  +I       VL+ +  D +  A +L  EL    +   +  ++      +  + +    ++I G+ EL    VK+K++ T  ++ ++  + ++ +  R+
Sbjct:  250 VINHNIVRGLDYYCKTVFEFTTSELGSQNSVIAGGRYDGLVKSMGGHSTPAIGFAAGVERLSALIDYEHKKPKRI-------VLIPIGDDAISYAIKLAYELRCKGIHVCWNNYRGTSLKNELRKANDTDIVLIFGDEELQSNTVKVKDMKTGDQQNVAVCDLLDNLLYRI 413          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_CHRSD (Histidyl-tRNA synthetase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=hisS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.616e-11
Identity = 49/176 (27.84%), Postives = 84/176 (47.73%), Query Frame = -3
Query:  290 VFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSE-LWNAKVKAEYMVH---KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI-DTTQEEVISRSNFVEEIQRRL 802
            V +  L RGLDYY+  +FE   +     G++ AGGRYD L+   G K  P VG ++G+ER+  ++E +          +   V +  +GD     A L+ E L +A  +    VH         I +A +S     +++G+ E+  G V +K + +  ++E ++R      +Q  L
Sbjct:  252 VINPRLVRGLDYYSRTVFEWTTQALGSQGTVCAGGRYDGLVEQLGGKPTPGVGFAMGVERLILLLETLDLVPE--AARSRPDVYLTAMGDTASREAMLLGEHLRDALPEMHLQVHCGGGSFKSQIKKADKSGARIALMLGDDEIASGSVGIKFLREDREQESVAREALAARLQALL 425          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SYNWW (Histidyl-tRNA synthetase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=hisS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.334e-11
Identity = 42/170 (24.71%), Postives = 84/170 (49.41%), Query Frame = -3
Query:  299 VFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPL-AAELVSELWNAKVKAEYMVHKKVMKL-IDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 802
            + D +L RGLDYY+   FE    G     ++  GGRYD L+   G   +P +G +LG+ER+   ++ + K +          V V ++ D   +   +LV+EL    ++A+     +  K  +  A ++   ++V+VGE E+ +    L+++ + ++  + +   +  I+
Sbjct:  250 IHDNNLVRGLDYYSNTAFEIHLPGIGAQSAVGGGGRYDGLVKELGGPDIPGIGFALGMERLLLALDMLGKSK---FSNPSLDVFVVVMNDAYEMQGLQLVNELRRRGIRADKDYGGRSGKAQMKYAGKTAARFVVMVGEEEVEKHFWTLRDMQSKEQWQLGQEELISSIR 416          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_STRU0 (Histidyl-tRNA synthetase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=hisS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.334e-11
Identity = 53/175 (30.29%), Postives = 81/175 (46.29%), Query Frame = -3
Query:  296 VFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKL-PLAAELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVIS----RSNFVEEIQR 802
            V D ++ RGLDYY   IFE + K      +I AGGRYD L+  F   + P  G  LG+ER+  I+E   K+   +       V + +LG+     A  LV  +      AE   + +K+      A       ++ +GE E+  G V +KN  T +E  +S     SNF   +++
Sbjct:  252 VIDTNMVRGLDYYNHTIFEFMAKVEGSDLTICAGGRYDGLVSYFDGPETPGFGFGLGLERLLLILE---KQGITLPIEEPMDVYLAVLGEAANSKALALVQAIRKQGFTAERDYLGRKIKAQFKSADSFNAKTIITLGESEVETGKVIIKNNQTREEMEVSLEEITSNFATIMEK 423          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SALG2 (Histidyl-tRNA synthetase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=hisS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.334e-11
Identity = 41/170 (24.12%), Postives = 83/170 (48.82%), Query Frame = -3
Query:  290 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHK----KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 787
            L RGLDYY   +FE +       G++ AGGRYD L+   G +  PAVG ++G+ER+  +++ +  E    I +    + +   G +   AA  ++E    ++    ++         K   RA +      +++GE E+ +G V +K++ + ++  +++ +    ++  L
Sbjct:  257 LVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPE---FIASPVVDIYLVAAGAQTQSAAMTLAERLRDEMPGVKLMTNHGGGNFKKQFARADKWDARIALVLGESEVADGTVVVKDLRSGEQTAVAQDSVAAHLRTLL 423          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_ORITB (Histidyl-tRNA synthetase OS=Orientia tsutsugamushi (strain Boryong) GN=hisS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.334e-11
Identity = 51/184 (27.72%), Postives = 85/184 (46.20%), Query Frame = -3
Query:  299 CIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVG---SIAAGGRYDNLIGMF------GTKQVPAVGVSLGIER--VFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 817
            C  K   + +L RGLDYY   +FE +   +TQ+G   ++  GGRYD L          G K +PA+G + GIER  + T    +      II   E     G++         L+ +L N  +     +   + K ++RA   K   ++ +G  E+ E   ++K++DT+ E VI  +  +  +Q
Sbjct:  248 CGIKYTINANLVRGLDYYCHTVFEYV---STQIGAQSTVLGGGRYDGLFEQMGGKLASGKKMLPAIGFAAGIERLALLTNYTPVDVRPIVIIPVDEEYHQHGII---------LLQKLRNNNITTVIDLQDSISKRLNRANHIKASKVIFIGAIEMREQSYRIKDLDTSNECVIIHNELLSYLQ 419          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_LACJO (Histidyl-tRNA synthetase OS=Lactobacillus johnsonii GN=hisS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.334e-11
Identity = 49/180 (27.22%), Postives = 88/180 (48.89%), Query Frame = -3
Query:  299 VFDLSLARGLDYYTGVIFEAIFKGAT---QVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERN-QIIRATETQVLVGLLGDKLPL-AAELVSELWNAKVKAEYMV-HKKVMKLIDRARESKIPWMVIVGERELNEGIVKL------KNIDTTQEEVISRSNFVEEIQ 802
            V D  L RGLDYYTG+IFE + +         +I  GGRY++L+  F   + PAVG  +G ER+  ++    KE+N  + +       +  +G      A E+   L      A+Y V  KK+ +   +A      +++ +G +EL  G++ +      K ID + E++ +  + + +++
Sbjct:  252 VMDDDLVRGLDYYTGIIFEFMVEDKNLWESATTILGGGRYNHLVEEFDGPETPAVGFGIGEERLMLVL----KEQNPDLFQEEGIDFFITNIGAGTEFKAVEVARSLREQGFSAQYDVDQKKLKQQFRKADRVHATFVITLGAKELENGVLNIKRLSDGKTIDLSLEDINNMQDVINKLE 427          
The following BLAST results are available for this feature:
BLAST of CV884405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
SYH_BLOFL4.300e-1128.90Histidyl-tRNA synthetase OS=Blochmannia floridanus... [more]
SYH_METFK5.616e-1130.64Histidyl-tRNA synthetase OS=Methylobacillus flagel... [more]
SYH_LACPL5.616e-1130.39Histidyl-tRNA synthetase OS=Lactobacillus plantaru... [more]
SYH_EHRRW5.616e-1124.56Histidyl-tRNA synthetase OS=Ehrlichia ruminantium ... [more]
SYH_CHRSD5.616e-1127.84Histidyl-tRNA synthetase OS=Chromohalobacter salex... [more]
SYH_SYNWW7.334e-1124.71Histidyl-tRNA synthetase OS=Syntrophomonas wolfei ... [more]
SYH_STRU07.334e-1130.29Histidyl-tRNA synthetase OS=Streptococcus uberis (... [more]
SYH_SALG27.334e-1124.12Histidyl-tRNA synthetase OS=Salmonella gallinarum ... [more]
SYH_ORITB7.334e-1127.72Histidyl-tRNA synthetase OS=Orientia tsutsugamushi... [more]
SYH_LACJO7.334e-1127.22Histidyl-tRNA synthetase OS=Lactobacillus johnsoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884405 ID=CV884405; Name=CV884405; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTCATCAAAATTCTTTAATTAAAATTCTCGAATCT
ATAAAATGACAACCATTATAATATCGGACAATTTCTACAGGGGAAAATGG
GAGAAAAAAACAAACAACAAATCATCTTCAATTCAATTTTTTACACGTTC
GTTACCAATTTGTCGAGATGCAGATATCAGACATGCCGTTGCAGCTAATG
ACATGCAGATTAATTGATATTCCAAGCGTTGTGTAACGTAGCAGAATGGC
TTAAAGTTGTGCTTCAACTAAATATTACGTTCATTGGTTCAATCGTCTTT
GAATTTCCTCAACAAAGTTACTTCTGGAAATAACCTCCTCTTGAGTGGTG
TCAATGTTCTTTAATTTTACTATTCCTTCATTCAGCTCGCGCTCACCCAC
AATTACCATCCAAGGGATTTTCGACTCCCTGGCACGATCAATGAGCTTCA
TCACTTTCTTATGGACCATGTATTCTGCTTTCACCTTGGCATTCCACAGC
TCGCTGACCAGTTCAGCAGCTAGAGGAAGTTTATCCCCGAGCAAGCCCAC
AAGTACTTGCGTCTCGGTGGCTCGAATTATCTGGTTCCTTTCTTTTTGAA
TCTGCTCCATTATAGTAAAGACTCGCTCAATTCCAAGACTGACACCAACT
GCAGGAACCTGCTTTGTACCAAACATTCCGATGAGGTTGTCATAACGTCC
ACCAGCTGCAATTGAACCAACCTGTGTGGCCCCTTTGAAAATGGCTTCAA
ATATGACACCAGTGTAATAGTCAAGACCTCTTGCAAGACTCAAATCAAAA
ACCACTTTATCAATGCACTTTGACTTTTCTAGAGCTTGAAAAAAAATTTC
AAGGTCATCCAATGCAAGTTTAGCTGAACTGTTTTCTAAAA
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