CV884405

Overview
NameCV884405
Unique NameCV884405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_HALWD (Histidyl-tRNA synthetase OS=Haloquadratum walsbyi (strain DSM 16790) GN=hisS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.334e-11
Identity = 46/156 (29.49%), Postives = 76/156 (48.72%), Query Frame = -3
Query:  329 LSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVI 793
            L+ ARGLDYYTGV+FE          S+  GGRYDNLI  FG +  PAVGV+ G+  +  + ++      + +    T   +  +GD   +A  +  EL   K   E  +  +     +  A       ++IVGER+L    + +K++++  +  +
Sbjct:  264 LTTARGLDYYTGVVFECFDATGEVSRSVFGGGRYDNLIESFGGQPTPAVGVAPGLAPLSLLCQRAGVWPTEEL---TTDYYILTVGDTRSVATRIARELRVNKNTVEIDIADRSFGAQMGYADSINAETVIIVGERDLENDEITIKDMNSGDQTTV 416          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_EHRRG (Histidyl-tRNA synthetase OS=Ehrlichia ruminantium (strain Gardel) GN=hisS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.334e-11
Identity = 42/171 (24.56%), Postives = 82/171 (47.95%), Query Frame = -3
Query:  290 VFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 802
            V + ++ RGLDYY   +FE          S+ AGGRYD L+   G    PA+G + G+ER+  +++   K+  +I       VL+ +  D    A +L  EL    +   +  ++      +  + +    ++I G+ EL    VK+K++ T  ++ ++  + ++ +  R+
Sbjct:  250 VINHNIVRGLDYYCKTVFEFTTSELGSQNSVIAGGRYDGLVKSMGGHSTPAIGFAAGVERLSALIDYEHKKPKRI-------VLIPIGDDATSYAIKLAYELRCKGIHVCWNNYRGTSLKNELRKANDTDIVLIFGDEELQSNTVKVKDMKTGDQQNVAVCDLLDNLLHRI 413          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_DESOH (Histidyl-tRNA synthetase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=hisS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.334e-11
Identity = 49/161 (30.43%), Postives = 79/161 (49.07%), Query Frame = -3
Query:  329 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAA-----ELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVI 796
            D  L RGLDYYT   FE          +IA GGRYD+L+ + G    PAVG ++G+ER   ++E +  E   +      ++ +  LG++    A     EL    ++ ++  E    K  MK  D+   S +   +IVG+ E+  G + L+N+ T  ++ I
Sbjct:  251 DKRLVRGLDYYTRTTFEVQTDRLGAQSAIAGGGRYDDLVKLLGGPDQPAVGFAVGLER---LVELVAMEET-VSDVAHLRLFIAALGERARRRAFGWMCELNRRGFDVEMSLEERGLKSQMKTADKWNASHV---LIVGDAEMETGSLILRNMKTKAQQEI 404          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_CHLAB (Histidyl-tRNA synthetase OS=Chlamydophila abortus GN=hisS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.334e-11
Identity = 55/193 (28.50%), Postives = 90/193 (46.63%), Query Frame = -3
Query:  290 DDLEIFFQALEKSKCIDKVVFDLS--LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 859
            DD + F + L     ++ + +D++  L RGLDYYT ++FEAI        ++  GGRYD LI   G    PA G  +G+ERV   ++ +  + N    ++    L+ +              L +  +  E    HKK+   +  A   K  ++  VGEREL    + +KN+   QE     S   +E+++RL
Sbjct:  237 DDRKYFDEILSALDALN-IAYDINPRLVRGLDYYTDLVFEAITTCRDHSYALGGGGRYDGLIASSGGPATPACGFGIGLERV---IQTLLAQGNFTPLSSHKLRLIPVESQADSFCFVWAQHLRSLGIPTEVDWTHKKLKNALKIADAEKATFVCPVGERELVSEQLTVKNMSLRQE----FSGSKQEVEQRL 421          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_BACSU (Histidyl-tRNA synthetase OS=Bacillus subtilis GN=hisS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.334e-11
Identity = 47/166 (28.31%), Postives = 81/166 (48.80%), Query Frame = -3
Query:  311 DLSLARGLDYYTGVIFEAIF--KGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKL-PLAAELVSELWNAKVKAEYMVHKKVMK-LIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFV 796
            D +L RGLDYY    FE +   +G   + ++A GGRYD L+   G  + P +G ++ IER   ++  I  E+ ++         +  LG+K    +  LV +L  A + +E     K MK     A   K  ++ I+GE EL +  + +K+  T ++  ++   F+
Sbjct:  253 DPNLVRGLDYYNHTAFEIMSNAEGFGAITTLAGGGRYDGLVEQIGGPEAPGIGFAMSIER---LLAAIDAEKRELPVDKGIDCYIVTLGEKAKDYSVSLVYKLREAGISSEIDYENKKMKGQFKTADRLKARFIAILGEDELAQNKINVKDAQTGEQIEVALDEFI 415          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_VESOH (Histidyl-tRNA synthetase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=hisS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 47/153 (30.72%), Postives = 75/153 (49.02%), Query Frame = -3
Query:  359 VFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-----LPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLK 802
            V + SL RGLDYY   +FE          +I AGGRYD LI   G    PAVG+++G+ER+  ++E     +N I   +   + +   G K     + +A  L  EL N  +    +         ++A ++K  + +I+GE+ELN   + +K
Sbjct:  251 VINTSLVRGLDYYNRTVFEWTTTDLGTQSTICAGGRYDGLIEKMGGTPTPAVGLAIGLERLVLLLE----AQNLISTKSTLSIYLIAFGKKEQIKSIQIANVLHDELPNV-ILYNDLTLGSFKSQFEKADKAKANFALILGEQELNNNQISIK 398          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_THIDA (Histidyl-tRNA synthetase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=hisS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 58/195 (29.74%), Postives = 91/195 (46.67%), Query Frame = -3
Query:  335 NSSAKLALDDLEI----FFQALEKSKCIDKVVFDLS--LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVH------KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEE 883
            N+ A   LD+LE      F AL+     + + F+++  L RGLDYY   +FE +       G++ AGGRYD L+   G K  PA G ++GIER+  ++E   K    I+ A     +V         A +  + L  A +    ++H      K  MK   +A  S+  + VI+G+ E     V +K +  T E+
Sbjct:  218 NAEAPRLLDELEDEALNHFDALQGLLRANGIAFEINPRLVRGLDYYNRTVFEWVTDQLGAQGTVCAGGRYDGLVEQLGGKPAPAAGFAMGIERLLALVETSGK---PIVPAVPDAYIVHAGDTADAFAWQAAATLRGAGLAV--VLHCGGGSFKSQMK---KADASRARYAVIIGDEEAAAQQVSVKPLRGTAEQ 404          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_STRSY (Histidyl-tRNA synthetase OS=Streptococcus suis (strain 05ZYH33) GN=hisS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 47/155 (30.32%), Postives = 77/155 (49.68%), Query Frame = -3
Query:  338 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAA-ELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQE 796
            D ++ RGLDYY   IFE + +      +I AGGRYD L+  FG  + PA G  +GIER+  ++E   K+  ++   T+  V + +LG +    A +LV  +     +AE   + +K+      A       ++ +G  E+  G V +KN  T  +
Sbjct:  254 DTNMVRGLDYYNHTIFEFMTEVGGNDLTICAGGRYDGLVTYFGGPETPAFGFGMGIERLILVLE---KQGIELPLDTQLDVYIAVLGQEANGGALDLVQAIRKQGFRAERDYLDRKLKAQFKSADVFGAKAIITLGGSEIESGQVVVKNNQTRSQ 405          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_STRS2 (Histidyl-tRNA synthetase OS=Streptococcus suis (strain 98HAH33) GN=hisS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 47/155 (30.32%), Postives = 77/155 (49.68%), Query Frame = -3
Query:  338 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAA-ELVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQE 796
            D ++ RGLDYY   IFE + +      +I AGGRYD L+  FG  + PA G  +GIER+  ++E   K+  ++   T+  V + +LG +    A +LV  +     +AE   + +K+      A       ++ +G  E+  G V +KN  T  +
Sbjct:  254 DTNMVRGLDYYNHTIFEFMTEVGGNDLTICAGGRYDGLVTYFGGPETPAFGFGMGIERLILVLE---KQGIELPLDTQLDVYIAVLGQEANGGALDLVQAIRKQGFRAERDYLDRKLKAQFKSADVFGAKAIITLGGSEIESGQVVVKNNQTRSQ 405          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SALTY (Histidyl-tRNA synthetase OS=Salmonella typhimurium GN=hisS PE=1 SV=4)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 41/170 (24.12%), Postives = 83/170 (48.82%), Query Frame = -3
Query:  290 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHK----KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 787
            L RGLDYY   +FE +       G++ AGGRYD L+   G +  PAVG ++G+ER+  +++ +  E    I +    + +   G +   AA  ++E    ++    ++         K   RA +      +++GE E+ +G V +K++ + ++  +++ +    ++  L
Sbjct:  257 LVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPE---FIASPVVDIYLVAAGAQTQSAAMTLAERLRDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVAQDSVAAHLRTLL 423          
The following BLAST results are available for this feature:
BLAST of CV884405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
SYH_HALWD7.334e-1129.49Histidyl-tRNA synthetase OS=Haloquadratum walsbyi ... [more]
SYH_EHRRG7.334e-1124.56Histidyl-tRNA synthetase OS=Ehrlichia ruminantium ... [more]
SYH_DESOH7.334e-1130.43Histidyl-tRNA synthetase OS=Desulfococcus oleovora... [more]
SYH_CHLAB7.334e-1128.50Histidyl-tRNA synthetase OS=Chlamydophila abortus ... [more]
SYH_BACSU7.334e-1128.31Histidyl-tRNA synthetase OS=Bacillus subtilis GN=h... [more]
SYH_VESOH9.579e-1130.72Histidyl-tRNA synthetase OS=Vesicomyosocius okutan... [more]
SYH_THIDA9.579e-1129.74Histidyl-tRNA synthetase OS=Thiobacillus denitrifi... [more]
SYH_STRSY9.579e-1130.32Histidyl-tRNA synthetase OS=Streptococcus suis (st... [more]
SYH_STRS29.579e-1130.32Histidyl-tRNA synthetase OS=Streptococcus suis (st... [more]
SYH_SALTY9.579e-1124.12Histidyl-tRNA synthetase OS=Salmonella typhimurium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884405 ID=CV884405; Name=CV884405; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTCATCAAAATTCTTTAATTAAAATTCTCGAATCT
ATAAAATGACAACCATTATAATATCGGACAATTTCTACAGGGGAAAATGG
GAGAAAAAAACAAACAACAAATCATCTTCAATTCAATTTTTTACACGTTC
GTTACCAATTTGTCGAGATGCAGATATCAGACATGCCGTTGCAGCTAATG
ACATGCAGATTAATTGATATTCCAAGCGTTGTGTAACGTAGCAGAATGGC
TTAAAGTTGTGCTTCAACTAAATATTACGTTCATTGGTTCAATCGTCTTT
GAATTTCCTCAACAAAGTTACTTCTGGAAATAACCTCCTCTTGAGTGGTG
TCAATGTTCTTTAATTTTACTATTCCTTCATTCAGCTCGCGCTCACCCAC
AATTACCATCCAAGGGATTTTCGACTCCCTGGCACGATCAATGAGCTTCA
TCACTTTCTTATGGACCATGTATTCTGCTTTCACCTTGGCATTCCACAGC
TCGCTGACCAGTTCAGCAGCTAGAGGAAGTTTATCCCCGAGCAAGCCCAC
AAGTACTTGCGTCTCGGTGGCTCGAATTATCTGGTTCCTTTCTTTTTGAA
TCTGCTCCATTATAGTAAAGACTCGCTCAATTCCAAGACTGACACCAACT
GCAGGAACCTGCTTTGTACCAAACATTCCGATGAGGTTGTCATAACGTCC
ACCAGCTGCAATTGAACCAACCTGTGTGGCCCCTTTGAAAATGGCTTCAA
ATATGACACCAGTGTAATAGTCAAGACCTCTTGCAAGACTCAAATCAAAA
ACCACTTTATCAATGCACTTTGACTTTTCTAGAGCTTGAAAAAAAATTTC
AAGGTCATCCAATGCAAGTTTAGCTGAACTGTTTTCTAAAA
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