CV884405

Overview
NameCV884405
Unique NameCV884405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SALTI (Histidyl-tRNA synthetase OS=Salmonella typhi GN=hisS PE=3 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 41/170 (24.12%), Postives = 83/170 (48.82%), Query Frame = -3 
Query:  290 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHK----KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 787
            L RGLDYY   +FE +       G++ AGGRYD L+   G +  PAVG ++G+ER+  +++ +  E    I +    + +   G +   AA  ++E    ++    ++         K   RA +      +++GE E+ +G V +K++ + ++  +++ +    ++  L
Sbjct:  257 LVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPE---FIASPVVDIYLVAAGAQTQSAAMTLAERLRDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVAQDSVAAHLRTLL 423
[Close]
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SALSV (Histidyl-tRNA synthetase OS=Salmonella schwarzengrund (strain CVM19633) GN=hisS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 41/170 (24.12%), Postives = 83/170 (48.82%), Query Frame = -3 
Query:  290 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHK----KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 787
            L RGLDYY   +FE +       G++ AGGRYD L+   G +  PAVG ++G+ER+  +++ +  E    I +    + +   G +   AA  ++E    ++    ++         K   RA +      +++GE E+ +G V +K++ + ++  +++ +    ++  L
Sbjct:  257 LVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPE---FIASPVVDIYLVAAGAQTQSAAMTLAERLRDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVAQDSVAAHLRTLL 423
[Close]
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SALPK (Histidyl-tRNA synthetase OS=Salmonella paratyphi A (strain AKU_12601) GN=hisS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 41/170 (24.12%), Postives = 83/170 (48.82%), Query Frame = -3 
Query:  290 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHK----KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 787
            L RGLDYY   +FE +       G++ AGGRYD L+   G +  PAVG ++G+ER+  +++ +  E    I +    + +   G +   AA  ++E    ++    ++         K   RA +      +++GE E+ +G V +K++ + ++  +++ +    ++  L
Sbjct:  257 LVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPE---FIASPVVDIYLVAAGAQTQSAAMTLAERLRDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVAQDSVAAHLRTLL 423
[Close]
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SALPC (Histidyl-tRNA synthetase OS=Salmonella paratyphi C (strain RKS4594) GN=hisS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 41/170 (24.12%), Postives = 83/170 (48.82%), Query Frame = -3 
Query:  290 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHK----KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 787
            L RGLDYY   +FE +       G++ AGGRYD L+   G +  PAVG ++G+ER+  +++ +  E    I +    + +   G +   AA  ++E    ++    ++         K   RA +      +++GE E+ +G V +K++ + ++  +++ +    ++  L
Sbjct:  257 LVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPE---FIASPVVDIYLVAAGAQTQSAAMTLAERLRDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVAQDSVAAHLRTLL 423
[Close]
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SALPB (Histidyl-tRNA synthetase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=hisS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 41/170 (24.12%), Postives = 83/170 (48.82%), Query Frame = -3 
Query:  290 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHK----KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 787
            L RGLDYY   +FE +       G++ AGGRYD L+   G +  PAVG ++G+ER+  +++ +  E    I +    + +   G +   AA  ++E    ++    ++         K   RA +      +++GE E+ +G V +K++ + ++  +++ +    ++  L
Sbjct:  257 LVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPE---FIASPVVDIYLVAAGAQTQSAAMTLAERLRDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVAQDSVAAHLRTLL 423
[Close]
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SALPA (Histidyl-tRNA synthetase OS=Salmonella paratyphi A GN=hisS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 41/170 (24.12%), Postives = 83/170 (48.82%), Query Frame = -3 
Query:  290 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHK----KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 787
            L RGLDYY   +FE +       G++ AGGRYD L+   G +  PAVG ++G+ER+  +++ +  E    I +    + +   G +   AA  ++E    ++    ++         K   RA +      +++GE E+ +G V +K++ + ++  +++ +    ++  L
Sbjct:  257 LVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPE---FIASPVVDIYLVAAGAQTQSAAMTLAERLRDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVAQDSVAAHLRTLL 423
[Close]
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SALNS (Histidyl-tRNA synthetase OS=Salmonella newport (strain SL254) GN=hisS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 41/170 (24.12%), Postives = 83/170 (48.82%), Query Frame = -3 
Query:  290 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHK----KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 787
            L RGLDYY   +FE +       G++ AGGRYD L+   G +  PAVG ++G+ER+  +++ +  E    I +    + +   G +   AA  ++E    ++    ++         K   RA +      +++GE E+ +G V +K++ + ++  +++ +    ++  L
Sbjct:  257 LVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPE---FIASPVVDIYLVAAGAQTQSAAMTLAERLRDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVAQDSVAAHLRTLL 423
[Close]
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SALHS (Histidyl-tRNA synthetase OS=Salmonella heidelberg (strain SL476) GN=hisS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 41/170 (24.12%), Postives = 83/170 (48.82%), Query Frame = -3 
Query:  290 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHK----KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 787
            L RGLDYY   +FE +       G++ AGGRYD L+   G +  PAVG ++G+ER+  +++ +  E    I +    + +   G +   AA  ++E    ++    ++         K   RA +      +++GE E+ +G V +K++ + ++  +++ +    ++  L
Sbjct:  257 LVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPE---FIASPVVDIYLVAAGAQTQSAAMTLAERLRDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVAQDSVAAHLRTLL 423
[Close]
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SALEP (Histidyl-tRNA synthetase OS=Salmonella enteritidis PT4 (strain P125109) GN=hisS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 41/170 (24.12%), Postives = 83/170 (48.82%), Query Frame = -3 
Query:  290 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHK----KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 787
            L RGLDYY   +FE +       G++ AGGRYD L+   G +  PAVG ++G+ER+  +++ +  E    I +    + +   G +   AA  ++E    ++    ++         K   RA +      +++GE E+ +G V +K++ + ++  +++ +    ++  L
Sbjct:  257 LVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPE---FIASPVVDIYLVAAGAQTQSAAMTLAERLRDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVAQDSVAAHLRTLL 423
[Close]
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SALDC (Histidyl-tRNA synthetase OS=Salmonella dublin (strain CT_02021853) GN=hisS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 41/170 (24.12%), Postives = 83/170 (48.82%), Query Frame = -3 
Query:  290 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHK----KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 787
            L RGLDYY   +FE +       G++ AGGRYD L+   G +  PAVG ++G+ER+  +++ +  E    I +    + +   G +   AA  ++E    ++    ++         K   RA +      +++GE E+ +G V +K++ + ++  +++ +    ++  L
Sbjct:  257 LVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPE---FIASPVVDIYLVAAGAQTQSAAMTLAERLRDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVAQDSVAAHLRTLL 423
The following BLAST results are available for this feature:
BLAST of CV884405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
SYH_SALTI9.579e-1124.12Histidyl-tRNA synthetase OS=Salmonella typhi GN=hi... [more]
SYH_SALSV9.579e-1124.12Histidyl-tRNA synthetase OS=Salmonella schwarzengr... [more]
SYH_SALPK9.579e-1124.12Histidyl-tRNA synthetase OS=Salmonella paratyphi A... [more]
SYH_SALPC9.579e-1124.12Histidyl-tRNA synthetase OS=Salmonella paratyphi C... [more]
SYH_SALPB9.579e-1124.12Histidyl-tRNA synthetase OS=Salmonella paratyphi B... [more]
SYH_SALPA9.579e-1124.12Histidyl-tRNA synthetase OS=Salmonella paratyphi A... [more]
SYH_SALNS9.579e-1124.12Histidyl-tRNA synthetase OS=Salmonella newport (st... [more]
SYH_SALHS9.579e-1124.12Histidyl-tRNA synthetase OS=Salmonella heidelberg ... [more]
SYH_SALEP9.579e-1124.12Histidyl-tRNA synthetase OS=Salmonella enteritidis... [more]
SYH_SALDC9.579e-1124.12Histidyl-tRNA synthetase OS=Salmonella dublin (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884405 ID=CV884405; Name=CV884405; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTCATCAAAATTCTTTAATTAAAATTCTCGAATCT
ATAAAATGACAACCATTATAATATCGGACAATTTCTACAGGGGAAAATGG
GAGAAAAAAACAAACAACAAATCATCTTCAATTCAATTTTTTACACGTTC
GTTACCAATTTGTCGAGATGCAGATATCAGACATGCCGTTGCAGCTAATG
ACATGCAGATTAATTGATATTCCAAGCGTTGTGTAACGTAGCAGAATGGC
TTAAAGTTGTGCTTCAACTAAATATTACGTTCATTGGTTCAATCGTCTTT
GAATTTCCTCAACAAAGTTACTTCTGGAAATAACCTCCTCTTGAGTGGTG
TCAATGTTCTTTAATTTTACTATTCCTTCATTCAGCTCGCGCTCACCCAC
AATTACCATCCAAGGGATTTTCGACTCCCTGGCACGATCAATGAGCTTCA
TCACTTTCTTATGGACCATGTATTCTGCTTTCACCTTGGCATTCCACAGC
TCGCTGACCAGTTCAGCAGCTAGAGGAAGTTTATCCCCGAGCAAGCCCAC
AAGTACTTGCGTCTCGGTGGCTCGAATTATCTGGTTCCTTTCTTTTTGAA
TCTGCTCCATTATAGTAAAGACTCGCTCAATTCCAAGACTGACACCAACT
GCAGGAACCTGCTTTGTACCAAACATTCCGATGAGGTTGTCATAACGTCC
ACCAGCTGCAATTGAACCAACCTGTGTGGCCCCTTTGAAAATGGCTTCAA
ATATGACACCAGTGTAATAGTCAAGACCTCTTGCAAGACTCAAATCAAAA
ACCACTTTATCAATGCACTTTGACTTTTCTAGAGCTTGAAAAAAAATTTC
AAGGTCATCCAATGCAAGTTTAGCTGAACTGTTTTCTAAAA
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