CV884405

Overview
NameCV884405
Unique NameCV884405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SALCH (Histidyl-tRNA synthetase OS=Salmonella choleraesuis GN=hisS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 41/170 (24.12%), Postives = 83/170 (48.82%), Query Frame = -3
Query:  290 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHK----KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 787
            L RGLDYY   +FE +       G++ AGGRYD L+   G +  PAVG ++G+ER+  +++ +  E    I +    + +   G +   AA  ++E    ++    ++         K   RA +      +++GE E+ +G V +K++ + ++  +++ +    ++  L
Sbjct:  257 LVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPE---FIASPVVDIYLVAAGAQTQSAAMTLAERLRDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVAQDSVAAHLRTLL 423          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SALA4 (Histidyl-tRNA synthetase OS=Salmonella agona (strain SL483) GN=hisS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 41/170 (24.12%), Postives = 83/170 (48.82%), Query Frame = -3
Query:  290 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHK----KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 787
            L RGLDYY   +FE +       G++ AGGRYD L+   G +  PAVG ++G+ER+  +++ +  E    I +    + +   G +   AA  ++E    ++    ++         K   RA +      +++GE E+ +G V +K++ + ++  +++ +    ++  L
Sbjct:  257 LVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPE---FIASPVVDIYLVAAGAQTQSAAMTLAERLRDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEVADGTVVVKDLRSGEQTAVAQDSVAAHLRTLL 423          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_PSEU2 (Histidyl-tRNA synthetase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=hisS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 47/155 (30.32%), Postives = 77/155 (49.68%), Query Frame = -3
Query:  359 VFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSE-------LWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLK 802
            V +  L RGLDYY+  +FE +       G++ AGGRYD L+   G K    VG ++GIER+  ++E +++   +I R  +  V +   G+   LAA  ++E           +V A     K   K   +A +S   + +I+GE EL   ++ +K
Sbjct:  253 VINPKLVRGLDYYSKTVFEWVTDQLGAQGTVCAGGRYDGLVEQMGGKPTAGVGFAMGIERLVLLLETLEQVPEEIAR--QVDVYLCAFGEAAELAALALTEKVRDQLPTLRLQVNAGAGSFKSQFK---KADKSGALYALILGEEELAAKVIGVK 402          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_PSESM (Histidyl-tRNA synthetase OS=Pseudomonas syringae pv. tomato GN=hisS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 48/155 (30.97%), Postives = 77/155 (49.68%), Query Frame = -3
Query:  359 VFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSEL-------WNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLK 802
            V +  L RGLDYY+  +FE +       G++ AGGRYD L+   G K    VG ++GIER+  ++E +++   +I R  +  V +   G+   LAA  ++E           +V A     K   K   +A +S   + +I+GE EL   I+ +K
Sbjct:  253 VINPKLVRGLDYYSKTVFEWVTDQLGAQGTVCAGGRYDGLVEQMGGKPTAGVGFAMGIERLVLLLETLEQVPEEIAR--QVDVYLCAFGEAAELAALALTEQVRDRLPNLRLQVNAGAGSFKSQFK---KADKSGALYALILGEEELAAKIIGVK 402          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_PSEPF (Histidyl-tRNA synthetase OS=Pseudomonas fluorescens (strain Pf0-1) GN=hisS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 48/155 (30.97%), Postives = 80/155 (51.61%), Query Frame = -3
Query:  359 VFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-----LPLAAELVSELWNAK--VKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLK 802
            V +  L RGLDYY+  +FE +       G++ AGGRYD L+   G K  P VG ++GIER+  ++E +++   +I R  +  V +   G++     L LA  +  +L N +  V A     K   K   +A +S   + +I+G+ E+ + +V  K
Sbjct:  253 VLNPKLVRGLDYYSKTVFEWVTDKLGAQGTVCAGGRYDGLVEQMGGKPTPGVGFAMGIERLVLLLETLEQIPEEISR--QVDVYLCAFGEEAELAGLALAERVRDQLPNLRLQVNAGAGSFKSQFK---KADKSGALYALILGDDEMAQQVVGFK 402          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_PROMA (Histidyl-tRNA synthetase OS=Prochlorococcus marinus GN=hisS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 46/176 (26.14%), Postives = 83/176 (47.16%), Query Frame = -3
Query:  335 FQALEKSKCIDKVVFDLS--LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIM-----EQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEE 841
            F++L+K     K+ F ++  L RGLDYY    FE I        ++  GGRYD L+   G    PA+G ++G+ER+  ++      +I  +   I +  + +    LL  +L L  + + EL ++             K   RA      W +++G+ E+N+G ++LK +    ++
Sbjct:  235 FESLQKVLNTLKIPFSVNQRLVRGLDYYCHTAFEIISDDLGAQATVCGGGRYDGLVEQLGGPHAPAIGFAVGMERLLILIGDRLANEIHPDVYLINKGEKAEAEALLLARQLRL-QDFIVELDDSGA--------AFAKQFKRANRVGATWAIVIGDEEINKGEIRLKRMKVLNKD 401          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_LEIXX (Histidyl-tRNA synthetase OS=Leifsonia xyli subsp. xyli GN=hisS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = -3
Query:  605 ALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIME 865
            A+ +LE    AL       ++ FD  L RG+ YYTGVIFE    G+    S+  GGRYD +IG F   +VPA G S+G ERV  ++E
Sbjct:  266 AIGELETLAHALGALPTGVRLRFDPKLVRGMGYYTGVIFEIAHPGSGS--SVGGGGRYDGMIGRFLGTEVPACGFSIGFERVVDLIE 350          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_HAEIN (Histidyl-tRNA synthetase OS=Haemophilus influenzae GN=hisS PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 43/168 (25.60%), Postives = 81/168 (48.21%), Query Frame = -3
Query:  299 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAA-ELVSELWNAKVKAEYMVH---KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNID-TTQEEVISRSNFVEEIQ 787
            L RGLDYY   +FE +       G++  GGRYD L+   G    P++G ++G+ER+  +++++      +   +   + V   G+   LAA EL  ++ +       M+H       K   RA +S     +++GE E+    V +K++   T ++ +   N ++ +Q
Sbjct:  256 LVRGLDYYNKTVFEWVTSALGAQGTVCGGGRYDGLVEQLGGHATPSIGFAMGLERLVLLVQEVNP---NVPAKSAVDIYVVYQGEGATLAAFELAEKVRSELPHLNTMLHCSSGNFKKQFKRADKSGATLALVIGESEVQNKQVVVKHLQGGTDQQTLDLVNIIDYLQ 420          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_ERWT9 (Histidyl-tRNA synthetase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=hisS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 45/161 (27.95%), Postives = 86/161 (53.42%), Query Frame = -3
Query:  317 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSE-LWNAKVKAEYMVH---KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSN 787
            L RGLDYY   +FE +       G++ AGGRYD L+   G +  PAVG ++G+ER+  +++ +  E  + +R  +  V+    GD +  AA L++E L +A  + + M +       K   RA +      +++GE E+    + +K++   +++ +++S+
Sbjct:  257 LVRGLDYYNRTVFEWVTDSLGAQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPE-FEPMRVVDVYVIAS--GDGVQSAAMLLAERLRDALPELKLMTNFGGGNFKKQFARADKWGARIALVLGEDEVANKQLVIKDLRNGEQQTLAQSD 414          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_CYAA5 (Histidyl-tRNA synthetase OS=Cyanothece sp. (strain ATCC 51142) GN=hisS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 45/168 (26.79%), Postives = 77/168 (45.83%), Query Frame = -3
Query:  284 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 787
            L RGLDYYT   FE I        ++  GGRYD L+   G    PAVG ++G+ER+  +++Q+Q   +               G  L LA +L  E    ++        K  K  DR   S     +++GE E     V+LK + + +++ ++++  + ++   + Q
Sbjct:  256 LVRGLDYYTHTAFEMISDDLGAQATVCGGGRYDGLVEELGGNPTPAVGWAIGMERLIILLKQLQSSPDMTPDIYIVSRGEAAEGQGLILAQKLRKEGLTVELDMSGSAFGKQFKRADR---SGAIACIVLGEEEATNKTVQLKWLQSKEQQAMTQAELLTKVGELIEQ 420          
The following BLAST results are available for this feature:
BLAST of CV884405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
SYH_SALCH9.579e-1124.12Histidyl-tRNA synthetase OS=Salmonella choleraesui... [more]
SYH_SALA49.579e-1124.12Histidyl-tRNA synthetase OS=Salmonella agona (stra... [more]
SYH_PSEU29.579e-1130.32Histidyl-tRNA synthetase OS=Pseudomonas syringae p... [more]
SYH_PSESM9.579e-1130.97Histidyl-tRNA synthetase OS=Pseudomonas syringae p... [more]
SYH_PSEPF9.579e-1130.97Histidyl-tRNA synthetase OS=Pseudomonas fluorescen... [more]
SYH_PROMA9.579e-1126.14Histidyl-tRNA synthetase OS=Prochlorococcus marinu... [more]
SYH_LEIXX9.579e-1143.68Histidyl-tRNA synthetase OS=Leifsonia xyli subsp. ... [more]
SYH_HAEIN9.579e-1125.60Histidyl-tRNA synthetase OS=Haemophilus influenzae... [more]
SYH_ERWT99.579e-1127.95Histidyl-tRNA synthetase OS=Erwinia tasmaniensis (... [more]
SYH_CYAA59.579e-1126.79Histidyl-tRNA synthetase OS=Cyanothece sp. (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884405 ID=CV884405; Name=CV884405; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTCATCAAAATTCTTTAATTAAAATTCTCGAATCT
ATAAAATGACAACCATTATAATATCGGACAATTTCTACAGGGGAAAATGG
GAGAAAAAAACAAACAACAAATCATCTTCAATTCAATTTTTTACACGTTC
GTTACCAATTTGTCGAGATGCAGATATCAGACATGCCGTTGCAGCTAATG
ACATGCAGATTAATTGATATTCCAAGCGTTGTGTAACGTAGCAGAATGGC
TTAAAGTTGTGCTTCAACTAAATATTACGTTCATTGGTTCAATCGTCTTT
GAATTTCCTCAACAAAGTTACTTCTGGAAATAACCTCCTCTTGAGTGGTG
TCAATGTTCTTTAATTTTACTATTCCTTCATTCAGCTCGCGCTCACCCAC
AATTACCATCCAAGGGATTTTCGACTCCCTGGCACGATCAATGAGCTTCA
TCACTTTCTTATGGACCATGTATTCTGCTTTCACCTTGGCATTCCACAGC
TCGCTGACCAGTTCAGCAGCTAGAGGAAGTTTATCCCCGAGCAAGCCCAC
AAGTACTTGCGTCTCGGTGGCTCGAATTATCTGGTTCCTTTCTTTTTGAA
TCTGCTCCATTATAGTAAAGACTCGCTCAATTCCAAGACTGACACCAACT
GCAGGAACCTGCTTTGTACCAAACATTCCGATGAGGTTGTCATAACGTCC
ACCAGCTGCAATTGAACCAACCTGTGTGGCCCCTTTGAAAATGGCTTCAA
ATATGACACCAGTGTAATAGTCAAGACCTCTTGCAAGACTCAAATCAAAA
ACCACTTTATCAATGCACTTTGACTTTTCTAGAGCTTGAAAAAAAATTTC
AAGGTCATCCAATGCAAGTTTAGCTGAACTGTTTTCTAAAA
back to top