CV884405

Overview
NameCV884405
Unique NameCV884405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3337 contig Csv1_Contig3337:514..1404. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_XANAC (Histidyl-tRNA synthetase OS=Xanthomonas axonopodis pv. citri GN=hisS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.090e-18
Identity = 55/173 (31.79%), Postives = 93/173 (53.76%), Query Frame = -3
Query:  284 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 796
            + S+ARGLDYYTG ++E       Q+GSI +GGRYD+L   +   ++P VG+S+G+ R+F  +   +    Q I  +  Q +V L+ + +L  A ++   L    +  E  M  KK+ K    A  + I ++V+ G+ EL  G+V +K++   Q+  ++R      +Q  L Q
Sbjct:  295 NFSIARGLDYYTGTVYETTLTDHPQIGSICSGGRYDSLASHYTKSKLPGVGISIGLTRLFWQLR--EAGLIQGIAESSVQAMVALMDETRLDDALDIARRLRIGGINTEVQMEPKKIGKQFQYAARAGIRFVVLAGDDELARGVVAVKDLVREQQFDVARDELASTLQVELEQ 465          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_WOLPP (Histidyl-tRNA synthetase OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=hisS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.090e-18
Identity = 52/162 (32.10%), Postives = 86/162 (53.09%), Query Frame = -3
Query:  302 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEI 787
            L RGLDYY   +FE + +     G++ AGGRYDNL+   G K  PA+G + GIER+  ++   +K+   I        ++ + G+    A  L SEL    +   Y     +   + +A ++    ++I G+ EL+   +K+KN+DT +E++I+R   VE I
Sbjct:  253 LVRGLDYYCHTVFEFVTEDLGAQGAVFAGGRYDNLVSSVGGKHTPAIGFAGGIERIMELINYAEKKERPI-------YIIPIGGEAEEHALTLASELRRNGLYVIYEYSGTLKTRMKKANQANAKVVLIFGDEELSSKTLKIKNMDTGEEKMIARDKTVENI 407          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SHEDO (Histidyl-tRNA synthetase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=hisS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.090e-18
Identity = 61/167 (36.53%), Postives = 89/167 (53.29%), Query Frame = -3
Query:  302 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAEYMVH---KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI-DTTQEEVISRSNFVEEI 787
            L RGLDYY   +FE +       G++ AGGRYD L+G  G K  PAVG ++G+ER+  ++E +    NQ I A E  V V  +GD  L  A ++  EL  A    + M H     V K + RA +S   + +I+GE EL    V +K + +  Q+E+++R    E I
Sbjct:  257 LVRGLDYYNRTVFEWVTTSLGSQGTVLAGGRYDGLVGQLGGKDTPAVGFAMGLERIVLLLETL--GLNQDI-APEVDVYVTAMGDSCLVEAFKVAQELRQALPGLKVMSHCGGGNVKKQMKRADKSGAAYAIIIGENELANNQVAIKPLRNNNQQELVARDALAETI 420          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_XANCP (Histidyl-tRNA synthetase OS=Xanthomonas campestris pv. campestris GN=hisS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.380e-17
Identity = 57/175 (32.57%), Postives = 94/175 (53.71%), Query Frame = -3
Query:  284 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQV--LVGLLGD-KLPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 796
            + S+ARGLDYYTG ++E       Q+GSI +GGRY+NL   +   ++P VG+S+G+ R+F  +    +E   I    E+ V  +V L+ + +L  A ++   L    +  E  M  KKV K    A  + I ++V+ G+ EL  G+V +K++   Q+  ++R      +Q  L Q
Sbjct:  295 NFSIARGLDYYTGTVYETTLTDHPQIGSICSGGRYENLASHYTKSKLPGVGISIGLTRLFWQL----REAGLIAGIAESSVHAMVALMDESRLDDALDIARRLRIGGINTEVQMEPKKVGKQFQYAARAGIRFVVLAGDDELARGVVAVKDLVREQQFDVARDELASTLQVELEQ 465          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_XANC8 (Histidyl-tRNA synthetase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=hisS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.380e-17
Identity = 57/175 (32.57%), Postives = 94/175 (53.71%), Query Frame = -3
Query:  284 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQV--LVGLLGD-KLPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 796
            + S+ARGLDYYTG ++E       Q+GSI +GGRY+NL   +   ++P VG+S+G+ R+F  +    +E   I    E+ V  +V L+ + +L  A ++   L    +  E  M  KKV K    A  + I ++V+ G+ EL  G+V +K++   Q+  ++R      +Q  L Q
Sbjct:  295 NFSIARGLDYYTGTVYETTLTDHPQIGSICSGGRYENLASHYTKSKLPGVGISIGLTRLFWQL----REAGLIAGIAESSVHAMVALMDESRLDDALDIARRLRIGGINTEVQMEPKKVGKQFQYAARAGIRFVVLAGDDELARGVVAVKDLVREQQFDVARDELASTLQVELEQ 465          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_WOLSU (Histidyl-tRNA synthetase OS=Wolinella succinogenes GN=hisS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.380e-17
Identity = 53/169 (31.36%), Postives = 90/169 (53.25%), Query Frame = -3
Query:  353 LEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI 853
            L      LE  +   K+ F  S+ARGL YYTG+++E        +GS+ +GGRYDNL   F  +++  VG S+G++R+   +E++        R T  QVLV  + + +L  + ++   L    +K+E Y    K  + +  A     P++ ++GE EL +G+V LK++
Sbjct:  259 LYAILDTLEMDRACYKINF--SIARGLGYYTGIVYETTLDALPSIGSVCSGGRYDNLTQSFSKERMSGVGASIGVDRLLAALEELGLLEG---RGTSAQVLVACMEESQLAYSYKVAERLRTLGIKSEVYPEAVKPKRSLAYANSKGHPYVAVIGEDELKQGVVTLKDM 422          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_CLOAB (Histidyl-tRNA synthetase OS=Clostridium acetobutylicum GN=hisS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.380e-17
Identity = 56/198 (28.28%), Postives = 106/198 (53.54%), Query Frame = -3
Query:  302 LENSSAKLALDDLEIFFQALEKSKCID-KVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELW-NAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEI 889
            ++N   +  ++++E   + L+     D +   +L + RGLDYYTG +FE +  G    GSI +GGRYDNL   +    +P VG+S+GI R+F ++ +I    N      E  ++V  +GD      +++++L  N K    Y    K+ K +  A +  I +++++GE E+    + +K++ T +++ ++    +EEI
Sbjct:  238 IKNEMLEKGIEEVEEVIKYLKLFGVEDSEYAINLKIIRGLDYYTGTVFETLLTGNESYGSICSGGRYDNLAQNYTENVLPGVGMSIGITRLFFVLREIGFIENYNSSLNEKYLIVP-IGDTFEYCTKILNKLLVNGKSAEIYFEEGKLKKKLTYANKLDIKYVILIGEDEVTNKELVIKDMITGEQKKLN----IEEI 430          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_XANC5 (Histidyl-tRNA synthetase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=hisS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.802e-17
Identity = 55/173 (31.79%), Postives = 93/173 (53.76%), Query Frame = -3
Query:  284 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 796
            + S+ARGLDYYTG ++E       Q+GSI +GGRY++L   +   ++P VG+S+G+ R+F  +   +    Q I  +  Q +V L+ + +L  A ++   L    +  E  M  KKV K    A  + I ++V+ G+ EL  G+V +K++   Q+  ++R      +Q  L Q
Sbjct:  299 NFSIARGLDYYTGTVYETTLTDHPQIGSICSGGRYESLASHYTKSKLPGVGISIGLTRLFWQLR--EAGLIQGIAESSVQAMVALMDETRLDDALDIARRLRIGGINTEVQMEPKKVGKQFQYAARAGIRFVVLAGDDELARGVVAVKDLVREQQFDVARDELASTLQVELEQ 469          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_WOLPM (Histidyl-tRNA synthetase OS=Wolbachia pipientis wMel GN=hisS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.802e-17
Identity = 53/162 (32.72%), Postives = 85/162 (52.47%), Query Frame = -3
Query:  302 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEI 787
            L RGLDYY   +FE + +     G++ AGGRYDNL+   G K  PA+G + GIER+  ++    KE   I       + +G   +K  L   L +EL    +   Y     +   + +A ++     +I G+ EL+   +K+KN+DT +E++I+R N +E I
Sbjct:  253 LVRGLDYYCHTVFEFVTEDLGAQGAVFAGGRYDNLVSSVGGKHTPAIGFAGGIERIMELINYSPKEERPIY-----LIPIGREAEKHALT--LANELRRNGLYVIYEYSGTLRTRMKKANQANAKAALIFGDEELSSKTLKIKNMDTGEEKIIARDNTIENI 407          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_HELHP (Histidyl-tRNA synthetase OS=Helicobacter hepaticus GN=hisS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.354e-17
Identity = 56/181 (30.94%), Postives = 99/181 (54.70%), Query Frame = -3
Query:  353 NSSAKLALDDLEIFFQALEKSKCI-DKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLA-AELVSELWN-AKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI 883
            N S K  ++DL++ ++ L   +   D    + S+ARGL YYTG+++E        +GS+ +GGRYDNL   F  +++  VG S+GI+R+   +E+++  +    RAT  + L+  + D+L    A L++E +  +++  E Y    K+ K    A      ++V++GE E N   + LKN+
Sbjct:  245 NDSIKKGIEDLKMLYEVLSSLQMDRDTYRVNFSIARGLGYYTGIVYETTLNALKSIGSVCSGGRYDNLTRTFSKEKMSGVGASIGIDRLLAALEELELLQK---RATSARALIVCM-DRLYFGYAHLLAESFRCSEIPIEVYPEASKLKKQFTYAHLKGYEFVVVIGENEFNTKTLTLKNM 421          
The following BLAST results are available for this feature:
BLAST of CV884405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
SYH_XANAC8.090e-1831.79Histidyl-tRNA synthetase OS=Xanthomonas axonopodis... [more]
SYH_WOLPP8.090e-1832.10Histidyl-tRNA synthetase OS=Wolbachia pipientis su... [more]
SYH_SHEDO8.090e-1836.53Histidyl-tRNA synthetase OS=Shewanella denitrifica... [more]
SYH_XANCP1.380e-1732.57Histidyl-tRNA synthetase OS=Xanthomonas campestris... [more]
SYH_XANC81.380e-1732.57Histidyl-tRNA synthetase OS=Xanthomonas campestris... [more]
SYH_WOLSU1.380e-1731.36Histidyl-tRNA synthetase OS=Wolinella succinogenes... [more]
SYH_CLOAB1.380e-1728.28Histidyl-tRNA synthetase OS=Clostridium acetobutyl... [more]
SYH_XANC51.802e-1731.79Histidyl-tRNA synthetase OS=Xanthomonas campestris... [more]
SYH_WOLPM1.802e-1732.72Histidyl-tRNA synthetase OS=Wolbachia pipientis wM... [more]
SYH_HELHP2.354e-1730.94Histidyl-tRNA synthetase OS=Helicobacter hepaticus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884405 ID=CV884405; Name=CV884405; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTCATCAAAATTCTTTAATTAAAATTCTCGAATCT
ATAAAATGACAACCATTATAATATCGGACAATTTCTACAGGGGAAAATGG
GAGAAAAAAACAAACAACAAATCATCTTCAATTCAATTTTTTACACGTTC
GTTACCAATTTGTCGAGATGCAGATATCAGACATGCCGTTGCAGCTAATG
ACATGCAGATTAATTGATATTCCAAGCGTTGTGTAACGTAGCAGAATGGC
TTAAAGTTGTGCTTCAACTAAATATTACGTTCATTGGTTCAATCGTCTTT
GAATTTCCTCAACAAAGTTACTTCTGGAAATAACCTCCTCTTGAGTGGTG
TCAATGTTCTTTAATTTTACTATTCCTTCATTCAGCTCGCGCTCACCCAC
AATTACCATCCAAGGGATTTTCGACTCCCTGGCACGATCAATGAGCTTCA
TCACTTTCTTATGGACCATGTATTCTGCTTTCACCTTGGCATTCCACAGC
TCGCTGACCAGTTCAGCAGCTAGAGGAAGTTTATCCCCGAGCAAGCCCAC
AAGTACTTGCGTCTCGGTGGCTCGAATTATCTGGTTCCTTTCTTTTTGAA
TCTGCTCCATTATAGTAAAGACTCGCTCAATTCCAAGACTGACACCAACT
GCAGGAACCTGCTTTGTACCAAACATTCCGATGAGGTTGTCATAACGTCC
ACCAGCTGCAATTGAACCAACCTGTGTGGCCCCTTTGAAAATGGCTTCAA
ATATGACACCAGTGTAATAGTCAAGACCTCTTGCAAGACTCAAATCAAAA
ACCACTTTATCAATGCACTTTGACTTTTCTAGAGCTTGAAAAAAAATTTC
AAGGTCATCCAATGCAAGTTTAGCTGAACTGTTTTCTAAAA
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