CV884405

Overview
NameCV884405
Unique NameCV884405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3337 contig Csv1_Contig3337:514..1404. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: HISZ_CLONN (ATP phosphoribosyltransferase regulatory subunit OS=Clostridium novyi (strain NT) GN=hisZ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 52/202 (25.74%), Postives = 94/202 (46.53%), Query Frame = -3 
Query:  302 LENSSAKL-ALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIME-----QIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEI 889
            L N + +L ALD++   ++ ++K      V  DL + + +DYYTGVIF+   +G      I +GGRYD LIG FG   +P+ G  + I+ +   +       I+K RN I+               L  A ++ + +    +  E  +   +   I  AR   +  ++ +  RE     +K+ +I+  + + +   NF+EE+
Sbjct:  235 LVNDNEQLKALDEILSLYKIIDKVGLSKYVSIDLGMIQDIDYYTGVIFKGYVEGVGDY--ILSGGRYDKLIGNFGC-DLPSTGFGINIDNIIEALRIYEVLNIRKFRNVILHCENKY---------LNRAYKIANRVRKNNIICEISLRDTIEDTIKYARSKCVDKIIFIDNRE----FIKIYDINFNKSKEVIIDNFLEEL 420
The following BLAST results are available for this feature:
BLAST of CV884405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
HISZ_CLONN9.579e-1125.74ATP phosphoribosyltransferase regulatory subunit O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884405 ID=CV884405; Name=CV884405; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTCATCAAAATTCTTTAATTAAAATTCTCGAATCT
ATAAAATGACAACCATTATAATATCGGACAATTTCTACAGGGGAAAATGG
GAGAAAAAAACAAACAACAAATCATCTTCAATTCAATTTTTTACACGTTC
GTTACCAATTTGTCGAGATGCAGATATCAGACATGCCGTTGCAGCTAATG
ACATGCAGATTAATTGATATTCCAAGCGTTGTGTAACGTAGCAGAATGGC
TTAAAGTTGTGCTTCAACTAAATATTACGTTCATTGGTTCAATCGTCTTT
GAATTTCCTCAACAAAGTTACTTCTGGAAATAACCTCCTCTTGAGTGGTG
TCAATGTTCTTTAATTTTACTATTCCTTCATTCAGCTCGCGCTCACCCAC
AATTACCATCCAAGGGATTTTCGACTCCCTGGCACGATCAATGAGCTTCA
TCACTTTCTTATGGACCATGTATTCTGCTTTCACCTTGGCATTCCACAGC
TCGCTGACCAGTTCAGCAGCTAGAGGAAGTTTATCCCCGAGCAAGCCCAC
AAGTACTTGCGTCTCGGTGGCTCGAATTATCTGGTTCCTTTCTTTTTGAA
TCTGCTCCATTATAGTAAAGACTCGCTCAATTCCAAGACTGACACCAACT
GCAGGAACCTGCTTTGTACCAAACATTCCGATGAGGTTGTCATAACGTCC
ACCAGCTGCAATTGAACCAACCTGTGTGGCCCCTTTGAAAATGGCTTCAA
ATATGACACCAGTGTAATAGTCAAGACCTCTTGCAAGACTCAAATCAAAA
ACCACTTTATCAATGCACTTTGACTTTTCTAGAGCTTGAAAAAAAATTTC
AAGGTCATCCAATGCAAGTTTAGCTGAACTGTTTTCTAAAA
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