CV884405

Overview
NameCV884405
Unique NameCV884405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3337 contig Csv1_Contig3337:514..1404. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SHEB9 (Histidyl-tRNA synthetase OS=Shewanella baltica (strain OS195) GN=hisS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.015e-17
Identity = 56/169 (33.14%), Postives = 93/169 (55.03%), Query Frame = -3
Query:  320 KVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-----LPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI-DTTQEEVISRS 808
            K   +  L RGLDYY   +FE +       G++ AGGRYD L+   G K  PAVG ++G+ER+  ++E ++  ++     +E  V V  +GD      + +A EL S L N KV + +     V K + RA +S     +++GE EL EG+V +K++ +  +++ ++RS
Sbjct:  250 KYTINPRLVRGLDYYNRTVFEWVTSSLGSQGTVLAGGRYDGLVAQLGGKDTPAVGFAMGLERIVLLLETLELNKD---IPSEVDVYVTAMGDSCLVEAIKIAQELRSALPNLKVMS-HCGGGNVKKQMKRADKSGASVALLIGEDELAEGMVTVKHLRNDIEQQRVARS 414          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SHEB8 (Histidyl-tRNA synthetase OS=Shewanella baltica (strain OS185) GN=hisS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.015e-17
Identity = 56/169 (33.14%), Postives = 93/169 (55.03%), Query Frame = -3
Query:  320 KVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-----LPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI-DTTQEEVISRS 808
            K   +  L RGLDYY   +FE +       G++ AGGRYD L+   G K  PAVG ++G+ER+  ++E ++  ++     +E  V V  +GD      + +A EL S L N KV + +     V K + RA +S     +++GE EL EG+V +K++ +  +++ ++RS
Sbjct:  250 KYTINPRLVRGLDYYNRTVFEWVTSSLGSQGTVLAGGRYDGLVAQLGGKDTPAVGFAMGLERIVLLLETLELNKD---IPSEVDVYVTAMGDSCLVEAIKIAQELRSALPNLKVMS-HCGGGNVKKQMKRADKSGASVALLIGEDELAEGMVTVKHLRNDIEQQRVARS 414          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SHEB5 (Histidyl-tRNA synthetase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=hisS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.015e-17
Identity = 56/169 (33.14%), Postives = 93/169 (55.03%), Query Frame = -3
Query:  320 KVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-----LPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI-DTTQEEVISRS 808
            K   +  L RGLDYY   +FE +       G++ AGGRYD L+   G K  PAVG ++G+ER+  ++E ++  ++     +E  V V  +GD      + +A EL S L N KV + +     V K + RA +S     +++GE EL EG+V +K++ +  +++ ++RS
Sbjct:  250 KYTINPRLVRGLDYYNRTVFEWVTSSLGSQGTVLAGGRYDGLVAQLGGKDTPAVGFAMGLERIVLLLETLELNKD---IPSEVDVYVTAMGDSCLVEAIKIAQELRSALPNLKVMS-HCGGGNVKKQMKRADKSGASVALLIGEDELAEGMVTVKHLRNDIEQQRVARS 414          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SHEB2 (Histidyl-tRNA synthetase OS=Shewanella baltica (strain OS223) GN=hisS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.015e-17
Identity = 56/169 (33.14%), Postives = 93/169 (55.03%), Query Frame = -3
Query:  320 KVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-----LPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI-DTTQEEVISRS 808
            K   +  L RGLDYY   +FE +       G++ AGGRYD L+   G K  PAVG ++G+ER+  ++E ++  ++     +E  V V  +GD      + +A EL S L N KV + +     V K + RA +S     +++GE EL EG+V +K++ +  +++ ++RS
Sbjct:  250 KYTINPRLVRGLDYYNRTVFEWVTSSLGSQGTVLAGGRYDGLVAQLGGKDTPAVGFAMGLERIVLLLETLELNKD---IPSEVDVYVTAMGDSCLVEAIKIAQELRSALPNLKVMS-HCGGGNVKKQMKRADKSGASVALLIGEDELAEGMVTVKHLRNDIEQQRVARS 414          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_RHOBA (Histidyl-tRNA synthetase OS=Rhodopirellula baltica GN=hisS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.015e-17
Identity = 62/196 (31.63%), Postives = 101/196 (51.53%), Query Frame = -3
Query:  317 NSSAKLALDDL-EIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLV-----GLLGDKLPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSN 883
            N +A   ++ L +I+  AL      D++  D+S+ARGLDYYTGVIFE        +GS+ +GGRYDNL G++  + +P +G SLG++R+   +E + +       +    V V     G   D L LA    S+L +A +  E Y   KK+ + +  A        +I G  E   G V++K + T + + ++ S+
Sbjct:  239 NETAAAGIERLTQIYRGALASGVSPDRLKIDVSIARGLDYYTGVIFETTLDELPGIGSVCSGGRYDNLAGLYTKQHLPGIGASLGLDRLLAALESLGRLSGV---SKPCAVFVPFFDKGHRDDYLKLA----SQLRDAGIGVEVYPEPKKLGQQLKYADSQGFAVAIIAGGNEWEAGAVQVKTLATKESQDVAYSH 427          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_TREDE (Histidyl-tRNA synthetase OS=Treponema denticola GN=hisS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.244e-17
Identity = 57/185 (30.81%), Postives = 96/185 (51.89%), Query Frame = -3
Query:  287 DKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLV-GLLGDKLPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGI--------VKLKNIDTTQEEVISRSNFVEEIQRRLN 811
            D +VFD S+ RGLDYYTGV+FE        +GS+ +GGRYDNL  ++  + +  VG S+G++R+   +E +  ++    +A+ T +L+  L  D L L+ ++V+     K+ AE Y   KK+      A +  I W + + +    E          +KLK++    E+    S  V++I+   N
Sbjct:  267 DSIVFDPSITRGLDYYTGVVFETFLNDLPSIGSVCSGGRYDNLTALYMKECITGVGASIGLDRLLAALELLGHQKT---KASFTDLLIFSLPEDDLVLSYKIVNFFEAEKINAEVYPEPKKMNHQYTYAEKKDIRWGLFLDKDSCVEEFDKAPQRFKIKLKDMTNRTEDETPLSEAVKKIRASKN 448          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SHEAM (Histidyl-tRNA synthetase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=hisS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.244e-17
Identity = 55/168 (32.74%), Postives = 88/168 (52.38%), Query Frame = -3
Query:  299 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAEYMVH---KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI-DTTQEEVISRSNFVEEIQ 787
            L RGLDYY   +FE +       G++ AGGRYD L+G  G K  PAVG ++G+ER+  ++E ++  ++         V V  +GD  +P A  + +EL  A      M H       K I RA +S     +I+G+ EL EG V +K + +  ++++++R    E I+
Sbjct:  257 LVRGLDYYNRTVFEWVTDSLGAQGTVLAGGRYDGLVGQLGGKDTPAVGFAMGLERIVLLLETLELAKDV---PAAVDVYVTAMGDSCVPAAFAIANELRVALPGVRIMTHCGGGNFKKQIKRADKSGAALALIIGDNELAEGKVAIKPLRNDNEQQLVAREALAETIK 421          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_HELPS (Histidyl-tRNA synthetase OS=Helicobacter pylori (strain Shi470) GN=hisS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.244e-17
Identity = 53/180 (29.44%), Postives = 92/180 (51.11%), Query Frame = -3
Query:  353 NSSAKLALDDLEIFFQALEKSKCIDKVV-FDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI 883
            N + K  + DLE  +Q L   +    +   D S+ARGL YYTG+++E    G   +GS+ +GGRYD+L   F  + +  VG S+GI+R+   + ++Q       R+T+ +VL+  + ++    A  L   L  + + +E Y   +K+ K    A      ++ ++GE E     + LKN+
Sbjct:  241 NENLKKGIQDLERLYQLLGDLQISQNLYKIDFSIARGLGYYTGIVYETTLNGMKSLGSVCSGGRYDHLTQNFSKENLQGVGASIGIDRLIVALSEMQLLDE---RSTQAKVLIACMHEEYFSYANRLAESLRQSGIFSEVYPEAQKIKKPFSYANHKGHEFVAVIGEEEFKSETLSLKNM 417          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_GLOVI (Histidyl-tRNA synthetase OS=Gloeobacter violaceus GN=hisS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.244e-17
Identity = 68/179 (37.99%), Postives = 97/179 (54.19%), Query Frame = -3
Query:  290 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMF--GTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK--LPLAAELVSELWNAKVKAEYMVHKK------VMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 796
            DL+LARGLDYYTG IFE +   A +VGS+ AGGRYD LI     G   +PA G S G++R+   M+Q+    + + RA E  VLV   GD     +  ELV  L  A V+AE   H++      + + +  A E    + VIVG  E+ +G   L+++ T ++E I  +   + I  RL
Sbjct:  292 DLALARGLDYYTGTIFETV--SAAKVGSVGAGGRYDRLIYDLSGGKADLPACGTSFGLDRILAAMDQLGLFAS-LRRAGE--VLVLHFGDPGVSQVCFELVRGLREAGVRAELGYHEEPFTPNGMRQQLGYANEKGFAYAVIVGPDEMAQGQAALRDLTTRRQEKIPLATAGQLIAGRL 465          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_WOLWR (Histidyl-tRNA synthetase OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=hisS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.849e-17
Identity = 52/162 (32.10%), Postives = 85/162 (52.47%), Query Frame = -3
Query:  302 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEI 787
            L RGLDYY   +FE + +     G++ AGGRYDNL+   G K  PA+G + GIER+  ++    KE   I       + +G   +K  L   L +EL    +   Y     +   + +A ++     +I G+ EL+   +K+KN++T +E++I+R N +E I
Sbjct:  253 LVRGLDYYCHTVFEFVTEDLGAQGAVFAGGRYDNLVSSVGGKHTPAIGFAGGIERIMELINYSPKEERPIY-----LIPIGREAEKHALT--LANELRRNGLYVIYEYSGTLRTRMKKANQANAKAALIFGDEELSSKTLKIKNMNTGEEKIIARDNTIENI 407          
The following BLAST results are available for this feature:
BLAST of CV884405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
SYH_SHEB94.015e-1733.14Histidyl-tRNA synthetase OS=Shewanella baltica (st... [more]
SYH_SHEB84.015e-1733.14Histidyl-tRNA synthetase OS=Shewanella baltica (st... [more]
SYH_SHEB54.015e-1733.14Histidyl-tRNA synthetase OS=Shewanella baltica (st... [more]
SYH_SHEB24.015e-1733.14Histidyl-tRNA synthetase OS=Shewanella baltica (st... [more]
SYH_RHOBA4.015e-1731.63Histidyl-tRNA synthetase OS=Rhodopirellula baltica... [more]
SYH_TREDE5.244e-1730.81Histidyl-tRNA synthetase OS=Treponema denticola GN... [more]
SYH_SHEAM5.244e-1732.74Histidyl-tRNA synthetase OS=Shewanella amazonensis... [more]
SYH_HELPS5.244e-1729.44Histidyl-tRNA synthetase OS=Helicobacter pylori (s... [more]
SYH_GLOVI5.244e-1737.99Histidyl-tRNA synthetase OS=Gloeobacter violaceus ... [more]
SYH_WOLWR6.849e-1732.10Histidyl-tRNA synthetase OS=Wolbachia sp. subsp. D... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884405 ID=CV884405; Name=CV884405; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTCATCAAAATTCTTTAATTAAAATTCTCGAATCT
ATAAAATGACAACCATTATAATATCGGACAATTTCTACAGGGGAAAATGG
GAGAAAAAAACAAACAACAAATCATCTTCAATTCAATTTTTTACACGTTC
GTTACCAATTTGTCGAGATGCAGATATCAGACATGCCGTTGCAGCTAATG
ACATGCAGATTAATTGATATTCCAAGCGTTGTGTAACGTAGCAGAATGGC
TTAAAGTTGTGCTTCAACTAAATATTACGTTCATTGGTTCAATCGTCTTT
GAATTTCCTCAACAAAGTTACTTCTGGAAATAACCTCCTCTTGAGTGGTG
TCAATGTTCTTTAATTTTACTATTCCTTCATTCAGCTCGCGCTCACCCAC
AATTACCATCCAAGGGATTTTCGACTCCCTGGCACGATCAATGAGCTTCA
TCACTTTCTTATGGACCATGTATTCTGCTTTCACCTTGGCATTCCACAGC
TCGCTGACCAGTTCAGCAGCTAGAGGAAGTTTATCCCCGAGCAAGCCCAC
AAGTACTTGCGTCTCGGTGGCTCGAATTATCTGGTTCCTTTCTTTTTGAA
TCTGCTCCATTATAGTAAAGACTCGCTCAATTCCAAGACTGACACCAACT
GCAGGAACCTGCTTTGTACCAAACATTCCGATGAGGTTGTCATAACGTCC
ACCAGCTGCAATTGAACCAACCTGTGTGGCCCCTTTGAAAATGGCTTCAA
ATATGACACCAGTGTAATAGTCAAGACCTCTTGCAAGACTCAAATCAAAA
ACCACTTTATCAATGCACTTTGACTTTTCTAGAGCTTGAAAAAAAATTTC
AAGGTCATCCAATGCAAGTTTAGCTGAACTGTTTTCTAAAA
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