CV884405

Overview
NameCV884405
Unique NameCV884405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3337 contig Csv1_Contig3337:514..1404. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SULTO (Histidyl-tRNA synthetase OS=Sulfolobus tokodaii GN=hisS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.849e-17
Identity = 51/169 (30.18%), Postives = 92/169 (54.44%), Query Frame = -3
Query:  296 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPL-AAELVSEL-WNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQR 796
            DL   RGL YYTG+IFE +    +   SIA GGRYDNL+ ++G  Q PA+G ++G+ER   ++E+        ++  + ++ V +L D+  L A  +V +L  N  +    +    + KLI    E    +++ +G++E  +  + LKN+ T ++  I   N ++ +++
Sbjct:  263 DLGFVRGLAYYTGLIFEVLHPSVSF--SIAGGGRYDNLVELYGGPQTPAIGFAIGVERTALVLEE-----PNTVKEKQNKIGVIVLSDEAILYAIRIVDKLRSNNYIATINLKSISISKLIPSYAEEGYSFLIFIGKKEYEDKTITLKNLSTKEQVTIKEENLLDYLKQ 424          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_METKA (Histidyl-tRNA synthetase OS=Methanopyrus kandleri GN=hisS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.849e-17
Identity = 62/182 (34.07%), Postives = 93/182 (51.10%), Query Frame = -3
Query:  332 AKLALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDT-TQEEV 874
            A+ AL++L     AL ++    ++  D S+ARGLDYYTG++FE            A GGRYD+L+   G   VPAVG+++G +R+    E   +  + +       + +   G    +AA+L    W   V+      K + K +  A   +  + VIVGEREL EG V +KN+ T  QEEV
Sbjct:  234 AERALENLMEISDALREAGVDHEL--DFSVARGLDYYTGMVFEIHVPELGGGSQCAGGGRYDDLVKELGGPDVPAVGMAIGFDRLLLAAELYDRIPDGVEETRALLIPLVRSGKIWEIAAKLRKLGWVVNVEVS---GKHIRKALSLADSLEYDYAVIVGERELKEGYVSVKNLKTGVQEEV 410          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_XYLFT (Histidyl-tRNA synthetase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=hisS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.945e-17
Identity = 55/174 (31.61%), Postives = 88/174 (50.57%), Query Frame = -3
Query:  284 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQ---IQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 796
            + S+ARGLDYYTG ++E       Q+GSI +GGRY+NL   +   ++P VG+S+G+ R+F  +     I       ++A    +    L D L +A  L     N +V+ E    KK+ K    A  + I ++V+ G+ E   G+V +K++   Q+  I R      +Q  L Q
Sbjct:  292 NFSIARGLDYYTGTVYETALINHPQIGSICSGGRYENLANHYTQSKLPGVGISIGLTRLFWQLRDAGLIDGIAESSVQAMVVLMDEATLDDALDIARRLRIGGINTEVQME---AKKLSKQFQYASRAGIRFVVLAGDDERARGVVAVKDLTREQQFEIPREELASTLQVELEQ 462          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_XYLF2 (Histidyl-tRNA synthetase OS=Xylella fastidiosa (strain M23) GN=hisS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.945e-17
Identity = 55/174 (31.61%), Postives = 88/174 (50.57%), Query Frame = -3
Query:  284 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQ---IQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 796
            + S+ARGLDYYTG ++E       Q+GSI +GGRY+NL   +   ++P VG+S+G+ R+F  +     I       ++A    +    L D L +A  L     N +V+ E    KK+ K    A  + I ++V+ G+ E   G+V +K++   Q+  I R      +Q  L Q
Sbjct:  292 NFSIARGLDYYTGTVYETALINHPQIGSICSGGRYENLANHYTQSKLPGVGISIGLTRLFWQLRDAGLIDGIAESSVQAMVVLMDEATLDDALDIARRLRIGGINTEVQME---AKKLSKQFQYASRAGIRFVVLAGDDERARGVVAVKDLTREQQFEIPREELASTLQVELEQ 462          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_XANOR (Histidyl-tRNA synthetase OS=Xanthomonas oryzae pv. oryzae GN=hisS PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.945e-17
Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = -3
Query:  284 EKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 829
            E++ C++      S+ARGLDYYTG ++E       Q+GSI +GGRY++L   +   ++P VG+S+G+ R+F  +   +    Q I  +  Q +V L+ + +L    ++   L  A +  E  M  KKV K    A  + I ++V+ G+ EL  G+V +K++   Q+  ++R      +   L Q
Sbjct:  289 ERAYCLN-----FSIARGLDYYTGTVYETTLTDHPQIGSICSGGRYESLASHYTKSRLPGVGISIGLTRLFWQLR--EAGLIQGIAESSVQAMVALMDETRLDDVLDIARRLRIAGINTEVQMEPKKVGKQFQYAARAGIRFVVLAGDDELARGVVAVKDLVREQQFDVARDELASTLLVELEQ 465          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_XANOP (Histidyl-tRNA synthetase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=hisS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.945e-17
Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = -3
Query:  284 EKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 829
            E++ C++      S+ARGLDYYTG ++E       Q+GSI +GGRY++L   +   ++P VG+S+G+ R+F  +   +    Q I  +  Q +V L+ + +L    ++   L  A +  E  M  KKV K    A  + I ++V+ G+ EL  G+V +K++   Q+  ++R      +   L Q
Sbjct:  289 ERAYCLN-----FSIARGLDYYTGTVYETTLTDHPQIGSICSGGRYESLASHYTKSRLPGVGISIGLTRLFWQLR--EAGLIQGIAESSVQAMVALMDETRLDDVLDIARRLRIAGINTEVQMEPKKVGKQFQYAARAGIRFVVLAGDDELARGVVAVKDLVREQQFDVARDELASTLLVELEQ 465          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_XANOM (Histidyl-tRNA synthetase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=hisS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.945e-17
Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = -3
Query:  284 EKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGD-KLPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 829
            E++ C++      S+ARGLDYYTG ++E       Q+GSI +GGRY++L   +   ++P VG+S+G+ R+F  +   +    Q I  +  Q +V L+ + +L    ++   L  A +  E  M  KKV K    A  + I ++V+ G+ EL  G+V +K++   Q+  ++R      +   L Q
Sbjct:  289 ERAYCLN-----FSIARGLDYYTGTVYETTLTDHPQIGSICSGGRYESLASHYTKSRLPGVGISIGLTRLFWQLR--EAGLIQGIAESSVQAMVALMDETRLDDVLDIARRLRIAGINTEVQMEPKKVGKQFQYAARAGIRFVVLAGDDELARGVVAVKDLVREQQFDVARDELASTLLVELEQ 465          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_THEFY (Histidyl-tRNA synthetase OS=Thermobifida fusca (strain YX) GN=hisS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.945e-17
Identity = 57/138 (41.30%), Postives = 79/138 (57.25%), Query Frame = -3
Query:  407 VVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-----LPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWM 805
            VV DLS+ARGLDYYTG ++EA F      GSI AGGRY+NL G F  + +P VG+S+G+ R+F   + + + R    R   T VLV L  D+     L +AA+L    +N +V   Y    K+ K I  A +  IP++
Sbjct:  275 VVADLSIARGLDYYTGTVYEATFNDDPGYGSICAGGRYENLAGQFIRRSLPGVGISIGLTRIFA--KLVSEGRITGGRFCPTDVLVVLPSDERRSAALAVAAQLRERGFNTEV---YHQAAKIGKQIQYAVKKDIPFV 407          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_STRAW (Histidyl-tRNA synthetase OS=Streptomyces avermitilis GN=hisS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.945e-17
Identity = 54/171 (31.58%), Postives = 90/171 (52.63%), Query Frame = -3
Query:  290 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKL-PLAAELVSELWNAKVKAEYMVHKKVMK-LIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 796
            D  L RGLDYYT   FE +  G     ++  GGRYD L  M G   +P+VG +LG++R    +E    E  ++   + T V    LG++   +    V+EL    + A++    K +K  +  A  S   + V+ GER+L EG+V+LK++++ ++  +  +  V E++ RL
Sbjct:  252 DAKLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMIGGPALPSVGWALGVDRTVLALE---AEGVELELPSSTSVFAVPLGEEARRILFAKVTELRKVGIAADFAYGGKGLKGAMKNANRSGARYTVVAGERDLAEGVVQLKDMESGEQTAVGVNEIVAELEARL 419          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH2_BACSK (Histidyl-tRNA synthetase 2 OS=Bacillus clausii (strain KSM-K16) GN=hisS2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.168e-16
Identity = 57/176 (32.39%), Postives = 96/176 (54.55%), Query Frame = -3
Query:  335 DLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLI-GMFGTKQ-VPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEE 856
            +L+   +AL       +  F+  LARGL+ YTG ++E          S+ +GGRYD  I G+ G +Q +P VG+S GI+ ++T ++ ++   NQ  +      ++ L   K  LA          +V  E+  +KK+ K +DRA + KIP+++++GE E+  G  KLKN++T  E+
Sbjct:  248 ELQELEEALRYLNIDSQCTFNPFLARGLEIYTGTVYELFLTEGAIQSSVGSGGRYDQAISGLTGEEQPMPTVGISFGIDVIYTALK-MEGRINQ--KPLLDYYVIPLQKQKEALAVASSLRKQGFRVDVEFK-NKKLTKALDRANKEKIPFVILIGEEEVASGRYKLKNMETGAEQ 419          
The following BLAST results are available for this feature:
BLAST of CV884405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
SYH_SULTO6.849e-1730.18Histidyl-tRNA synthetase OS=Sulfolobus tokodaii GN... [more]
SYH_METKA6.849e-1734.07Histidyl-tRNA synthetase OS=Methanopyrus kandleri ... [more]
SYH_XYLFT8.945e-1731.61Histidyl-tRNA synthetase OS=Xylella fastidiosa (st... [more]
SYH_XYLF28.945e-1731.61Histidyl-tRNA synthetase OS=Xylella fastidiosa (st... [more]
SYH_XANOR8.945e-1730.43Histidyl-tRNA synthetase OS=Xanthomonas oryzae pv.... [more]
SYH_XANOP8.945e-1730.43Histidyl-tRNA synthetase OS=Xanthomonas oryzae pv.... [more]
SYH_XANOM8.945e-1730.43Histidyl-tRNA synthetase OS=Xanthomonas oryzae pv.... [more]
SYH_THEFY8.945e-1741.30Histidyl-tRNA synthetase OS=Thermobifida fusca (st... [more]
SYH_STRAW8.945e-1731.58Histidyl-tRNA synthetase OS=Streptomyces avermitil... [more]
SYH2_BACSK1.168e-1632.39Histidyl-tRNA synthetase 2 OS=Bacillus clausii (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884405 ID=CV884405; Name=CV884405; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTCATCAAAATTCTTTAATTAAAATTCTCGAATCT
ATAAAATGACAACCATTATAATATCGGACAATTTCTACAGGGGAAAATGG
GAGAAAAAAACAAACAACAAATCATCTTCAATTCAATTTTTTACACGTTC
GTTACCAATTTGTCGAGATGCAGATATCAGACATGCCGTTGCAGCTAATG
ACATGCAGATTAATTGATATTCCAAGCGTTGTGTAACGTAGCAGAATGGC
TTAAAGTTGTGCTTCAACTAAATATTACGTTCATTGGTTCAATCGTCTTT
GAATTTCCTCAACAAAGTTACTTCTGGAAATAACCTCCTCTTGAGTGGTG
TCAATGTTCTTTAATTTTACTATTCCTTCATTCAGCTCGCGCTCACCCAC
AATTACCATCCAAGGGATTTTCGACTCCCTGGCACGATCAATGAGCTTCA
TCACTTTCTTATGGACCATGTATTCTGCTTTCACCTTGGCATTCCACAGC
TCGCTGACCAGTTCAGCAGCTAGAGGAAGTTTATCCCCGAGCAAGCCCAC
AAGTACTTGCGTCTCGGTGGCTCGAATTATCTGGTTCCTTTCTTTTTGAA
TCTGCTCCATTATAGTAAAGACTCGCTCAATTCCAAGACTGACACCAACT
GCAGGAACCTGCTTTGTACCAAACATTCCGATGAGGTTGTCATAACGTCC
ACCAGCTGCAATTGAACCAACCTGTGTGGCCCCTTTGAAAATGGCTTCAA
ATATGACACCAGTGTAATAGTCAAGACCTCTTGCAAGACTCAAATCAAAA
ACCACTTTATCAATGCACTTTGACTTTTCTAGAGCTTGAAAAAAAATTTC
AAGGTCATCCAATGCAAGTTTAGCTGAACTGTTTTCTAAAA
back to top