CV884405

Overview
NameCV884405
Unique NameCV884405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3337 contig Csv1_Contig3337:514..1404. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_FUSNN (Histidyl-tRNA synthetase OS=Fusobacterium nucleatum subsp. nucleatum GN=hisS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.526e-16
Identity = 53/172 (30.81%), Postives = 88/172 (51.16%), Query Frame = -3
Query:  299 KVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKL-PLAAELVSELWNAKVKAEYMVHKKVMKL-IDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 808
            K   D +L RGLDYY+  +FE +       G++  GGRYDNL+   G K +PAVG + G+ER+  ++E+   +           V +  LG+     A ++   L +  +K      +K MK  + +A + +  + VI+GE E N+GIV LK+  T +++ I     +  I+
Sbjct:  249 KYTEDPTLVRGLDYYSSTVFEIVTNKLGSQGTVLGGGRYDNLLKELGDKDIPAVGFATGVERIMMLLEENYPKNT-------PDVYIAWLGENTSETALKIAESLRDNDIKVYIDYSEKGMKSHMKKADKLETRYCVILGEDEFNKGIVLLKDFSTREQKEIKIEEIINYIK 413          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_ANASP (Histidyl-tRNA synthetase OS=Anabaena sp. (strain PCC 7120) GN=hisS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.526e-16
Identity = 60/202 (29.70%), Postives = 105/202 (51.98%), Query Frame = -3
Query:  290 ENSSAKLALDDLEIFFQALEKSKCIDK-VVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKL-PLAAELVSELWNAKVKAEYMVHKKVM-KLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 886
            E+    L + +LE     +      DK    DL++ARGL+YYTG ++E    G   +GSI +GGRY+ L+G F  +++P VG+S+G+ R+  I   ++      +  T  QV+V  + D+L P   ++  +L  A +       K+ + K    A +  I + VI+G  E       LK++ + ++  ++ ++  EEI+RRL
Sbjct:  262 ESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICSGGRYEELVGTFIGEKMPGVGISIGLTRL--ISRLLKAGILNTLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGADEAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 461          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_XYLFA (Histidyl-tRNA synthetase OS=Xylella fastidiosa GN=hisS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.993e-16
Identity = 57/177 (32.20%), Postives = 91/177 (51.41%), Query Frame = -3
Query:  284 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVF------TIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 796
            + S+ARGLDYYTG ++E       Q+GSI +GGRY+NL   +   ++P VG+S+G+ R+F       +M+ I +     ++A    +    L D L +A  L     N +V+ E    KKV K    A  + I ++V+ G+ E   G+V +K++   Q+  I R      +Q  L Q
Sbjct:  292 NFSIARGLDYYTGTVYETSLINHPQIGSICSGGRYENLANHYTQSKLPGVGISIGLTRLFWQLRDAGVMDGIAESS---VQAMVVLMDEATLDDALDIARCLRIGGINTEVQME---AKKVSKQFQYASRAGIRFVVLAGDDERARGVVAVKDLTREQQFEIPREELASTLQVELEQ 462          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_XYLFM (Histidyl-tRNA synthetase OS=Xylella fastidiosa (strain M12) GN=hisS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.603e-16
Identity = 57/177 (32.20%), Postives = 91/177 (51.41%), Query Frame = -3
Query:  284 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVF------TIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 796
            + S+ARGLDYYTG ++E       Q+GSI +GGRY+NL   +   ++P VG+S+G+ R+F       +M+ I +     ++A    +    L D L +A  L     N +V+ E    KKV K    A  + I ++V+ G+ E   G+V +K++   Q+  I R      +Q  L Q
Sbjct:  292 NFSIARGLDYYTGTVYETSLINHPQIGSICSGGRYENLANHYTQSKLPGVGISIGLTRLFWQLRDAGLMDGIAESS---VQAMVVLMDEATLDDALDIARCLRIGGINTEVQME---AKKVSKQFQYASRAGIRFVVLAGDDERARGVVAVKDLTREQQFEIPREELASTLQVELEQ 462          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_METMP (Histidyl-tRNA synthetase OS=Methanococcus maripaludis GN=hisS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.603e-16
Identity = 64/188 (34.04%), Postives = 98/188 (52.13%), Query Frame = -3
Query:  329 KLALDDLEIFFQALEKSKCI-----DKVVFDLSLARGLDYYTGVIFEAIFK--GATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVI 871
            K  L D E    ALE    I        V +  +ARGLDYYTG++FE   K  GA QV     GGRYDNLI +F  +  PAVG + G +R+   ++  + E N+ I     +    LL + L +A  L     + +V    ++ +K+ K ++ A    I  ++IVGE ++ +G V LKN++T ++ +I
Sbjct:  228 KEKLADFESSVAALENLDSILEFVPHDYVINFGIARGLDYYTGMVFEVYGKKEGAKQV---CGGGRYDNLIELFEGEPSPAVGFAYGFDRIMLNIDDFEVE-NESIFVVPVKSSEMLLKECLKIAKTLRDSGKSVEVD---LMGRKLNKALNYANTKNIKKVLIVGENDIRDGKVSLKNMETGEQSLI 408          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_META3 (Histidyl-tRNA synthetase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=hisS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.603e-16
Identity = 59/186 (31.72%), Postives = 106/186 (56.99%), Query Frame = -3
Query:  329 ALDDLEIFFQALEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFK--GATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPL-----AAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVI 865
            AL++LE   + ++++  I     +L +ARGLDYYTG++FE   K  GA QV     GGRYDNLI +F     PAVG + G +R+   ++  + E  +I+       +V +  DK  L      A+ + E+   K+    ++++K+ K ++ A    I  ++++GE+ELNE  + +K+++T ++++I
Sbjct:  241 ALNNLEEIMEFVKRNNYI----INLGIARGLDYYTGMVFEVYGKKEGARQV---CGGGRYDNLIELFEGAPTPAVGFAYGFDRIMLNIDDFEVEDKRIL-------IVPIKKDKKLLKECLIIADKLREM--EKIVEVDLMNRKLNKALNYANTVGISKVIMIGEKELNERKISIKDMETGEQKLI 410          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_STRCO (Histidyl-tRNA synthetase OS=Streptomyces coelicolor GN=hisS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.399e-16
Identity = 58/176 (32.95%), Postives = 94/176 (53.41%), Query Frame = -3
Query:  290 VVF--DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKL-PLAAELVSELWNAKVKAEYMVHKKVMK-LIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 805
            VVF  D  L RGLDYYT   FE +  G     ++  GGRYD L  M G   +P+VG +LG++R    +E    E  ++   + T V    LG++   +    V+EL    V A++    K +K  +  A  S   + +++GER+L EG+V+LK++++ ++  I  +  V E++ RL
Sbjct:  252 VVFEDDPKLVRGLDYYTRTTFEFVHDGLGSQSAVGGGGRYDGLSEMIGGPSLPSVGWALGVDRTVLALE---AEGIELDIPSATSVFAVPLGEEARRILFAKVTELRKNGVAADFSYGGKGLKAAMKAANRSGARYTLVLGERDLAEGVVQLKDMESGEQTAIGVNEIVAELESRL 424          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SHEON (Histidyl-tRNA synthetase OS=Shewanella oneidensis GN=hisS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.399e-16
Identity = 52/155 (33.55%), Postives = 81/155 (52.26%), Query Frame = -3
Query:  335 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAEYMVH---KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEE 787
            L RGLDYY   +FE +       G++ AGGRYD L+   G K+ PAVG ++G+ER+  ++E +   ++      E  V V  +GD  L  A ++  EL +A      M H     + K + RA +S     +++GE EL EG+V +K +    E+
Sbjct:  257 LVRGLDYYNRTVFEWVTNSLGSQGTVLAGGRYDGLVAQLGGKETPAVGFAMGLERIVLLLETLALTQD---IPAEVDVYVAAMGDNCLVEAIKVAQELRSALPTLRVMSHCGGGNLKKQMKRADKSGAQVALLIGEEELAEGVVTVKYLRNDNEQ 408          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SHEFN (Histidyl-tRNA synthetase OS=Shewanella frigidimarina (strain NCIMB 400) GN=hisS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.399e-16
Identity = 55/168 (32.74%), Postives = 89/168 (52.98%), Query Frame = -3
Query:  302 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-----LPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQE-EVISRSNFVEEI 787
            L RGLDYY   +FE +       G++ AGGRYD L+G  G K  PAVG ++G+ER+  ++E ++   +    A E  V V  +G+      + +A EL  +L   KV + +       K + RA +S   + +I+GE E+    V +K + T  E ++++RS  V +I
Sbjct:  257 LVRGLDYYNRTVFEWVTTSLGSQGTVLAGGRYDGLVGQLGGKDTPAVGFAMGLERIVLLLETLELTSD---IAPEVDVYVTAMGENCVVEAIKVAQELRQQLPTLKVMS-HCGGGNFKKQMKRADKSGAQFALIIGENEIANNQVAIKPLRTNNEQQLVTRSELVAKI 420          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_HELPJ (Histidyl-tRNA synthetase OS=Helicobacter pylori J99 GN=hisS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.399e-16
Identity = 52/180 (28.89%), Postives = 91/180 (50.56%), Query Frame = -3
Query:  353 NSSAKLALDDLEIFFQALEKSKCIDKVV-FDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI 883
            N + K  + DLE  +Q L   +    +   D S+ARGL YYTG+++E        +GS+ +GGRYD+L   F  + +  VG S+GI+R+   + ++Q       R+T+ +VL+  + ++    A  L   L  + + +E Y   +K+ K    A      ++ ++GE E     + LKN+
Sbjct:  241 NENLKKGIQDLERLYQLLGDLQISQNLYKIDFSIARGLGYYTGIVYETTLNDMKSLGSVCSGGRYDHLTKNFSKENLQGVGASIGIDRLIVALSEMQLLDE---RSTQAKVLIACMHEEYFSYANRLAESLRQSGIFSEVYPEAQKIKKPFSYANHKGHEFVAVIGEEEFKSETLSLKNM 417          
The following BLAST results are available for this feature:
BLAST of CV884405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
SYH_FUSNN1.526e-1630.81Histidyl-tRNA synthetase OS=Fusobacterium nucleatu... [more]
SYH_ANASP1.526e-1629.70Histidyl-tRNA synthetase OS=Anabaena sp. (strain P... [more]
SYH_XYLFA1.993e-1632.20Histidyl-tRNA synthetase OS=Xylella fastidiosa GN=... [more]
SYH_XYLFM2.603e-1632.20Histidyl-tRNA synthetase OS=Xylella fastidiosa (st... [more]
SYH_METMP2.603e-1634.04Histidyl-tRNA synthetase OS=Methanococcus maripalu... [more]
SYH_META32.603e-1631.72Histidyl-tRNA synthetase OS=Methanococcus aeolicus... [more]
SYH_STRCO3.399e-1632.95Histidyl-tRNA synthetase OS=Streptomyces coelicolo... [more]
SYH_SHEON3.399e-1633.55Histidyl-tRNA synthetase OS=Shewanella oneidensis ... [more]
SYH_SHEFN3.399e-1632.74Histidyl-tRNA synthetase OS=Shewanella frigidimari... [more]
SYH_HELPJ3.399e-1628.89Histidyl-tRNA synthetase OS=Helicobacter pylori J9... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884405 ID=CV884405; Name=CV884405; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTCATCAAAATTCTTTAATTAAAATTCTCGAATCT
ATAAAATGACAACCATTATAATATCGGACAATTTCTACAGGGGAAAATGG
GAGAAAAAAACAAACAACAAATCATCTTCAATTCAATTTTTTACACGTTC
GTTACCAATTTGTCGAGATGCAGATATCAGACATGCCGTTGCAGCTAATG
ACATGCAGATTAATTGATATTCCAAGCGTTGTGTAACGTAGCAGAATGGC
TTAAAGTTGTGCTTCAACTAAATATTACGTTCATTGGTTCAATCGTCTTT
GAATTTCCTCAACAAAGTTACTTCTGGAAATAACCTCCTCTTGAGTGGTG
TCAATGTTCTTTAATTTTACTATTCCTTCATTCAGCTCGCGCTCACCCAC
AATTACCATCCAAGGGATTTTCGACTCCCTGGCACGATCAATGAGCTTCA
TCACTTTCTTATGGACCATGTATTCTGCTTTCACCTTGGCATTCCACAGC
TCGCTGACCAGTTCAGCAGCTAGAGGAAGTTTATCCCCGAGCAAGCCCAC
AAGTACTTGCGTCTCGGTGGCTCGAATTATCTGGTTCCTTTCTTTTTGAA
TCTGCTCCATTATAGTAAAGACTCGCTCAATTCCAAGACTGACACCAACT
GCAGGAACCTGCTTTGTACCAAACATTCCGATGAGGTTGTCATAACGTCC
ACCAGCTGCAATTGAACCAACCTGTGTGGCCCCTTTGAAAATGGCTTCAA
ATATGACACCAGTGTAATAGTCAAGACCTCTTGCAAGACTCAAATCAAAA
ACCACTTTATCAATGCACTTTGACTTTTCTAGAGCTTGAAAAAAAATTTC
AAGGTCATCCAATGCAAGTTTAGCTGAACTGTTTTCTAAAA
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