CV884405

Overview
NameCV884405
Unique NameCV884405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3337 contig Csv1_Contig3337:514..1404. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_HELPG (Histidyl-tRNA synthetase OS=Helicobacter pylori (strain G27) GN=hisS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.399e-16
Identity = 52/180 (28.89%), Postives = 91/180 (50.56%), Query Frame = -3
Query:  353 NSSAKLALDDLEIFFQALEKSKCIDKVV-FDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI 883
            N + K  + DLE  +Q L   +    +   D S+ARGL YYTG+++E        +GS+ +GGRYD+L   F  + +  VG S+GI+R+   + ++Q       R+T+ +VL+  + ++    A  L   L  + + +E Y   +K+ K    A      ++ ++GE E     + LKN+
Sbjct:  241 NENLKKGIQDLERLYQLLGDLQISQNLYKIDFSIARGLGYYTGIVYETTLNDMKSLGSVCSGGRYDHLTKNFSKENLQGVGASIGIDRLIVALSEMQLLDE---RSTQAKVLIACMHEEYFSYANRLAESLRQSGIFSEVYPEAQKIKKPFSYANHKGHEFVAVIGEEEFKSETLSLKNM 417          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_WOLTR (Histidyl-tRNA synthetase OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=hisS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.439e-16
Identity = 51/166 (30.72%), Postives = 84/166 (50.60%), Query Frame = -3
Query:  290 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 787
            L RGLDYY   +FE + +     G++ AGGRYDNL+   G K  PA+G + GIER+  ++       N  ++      LV +  +    A  L +EL    +   Y  +  +   + +A ++     +I G  EL    +K+KN+DT +E++I+  N +E I + L
Sbjct:  253 LVRGLDYYCHTVFEFVIEDFGAQGAVFAGGRYDNLVSSVGGKYTPAIGFAGGIERIMELI-------NYSMKGDRPICLVPIGREAEEHALTLANELRRNGLYVIYEYNGALKNRMKKASQANAKAALIFGNEELGSKTLKIKNMDTGEEKIIAYGNIMENIHQTL 411          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_PYRIL (Histidyl-tRNA synthetase OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=hisS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.439e-16
Identity = 50/168 (29.76%), Postives = 97/168 (57.74%), Query Frame = -3
Query:  338 LEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTI--MEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMK-LIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQE 832
            LE +  +DK  FD+S+ RGLDYYTG++FEA F G  ++ ++  GGRYD+L+ ++   ++PA+G ++G+ER+     +E ++K  +  I   +         D  P A  +   L +A       + +K +K + +   +    +++I+G++EL +G+VK++++   +E
Sbjct:  252 LEAAVSLDKFRFDMSIVRGLDYYTGMVFEA-FAGEYKL-AVGGGGRYDDLLELYSGVKMPALGFAIGVERLMEAVGLEGVEKPLDYYIYIFD--------DDAYPYAVAIAKRLRSAGYSVVVELGEKNLKEVFEYILKIGTRYLIIIGKKELEKGVVKIRDLQRREE 409          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_HELPY (Histidyl-tRNA synthetase OS=Helicobacter pylori GN=hisS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.439e-16
Identity = 52/180 (28.89%), Postives = 91/180 (50.56%), Query Frame = -3
Query:  353 NSSAKLALDDLEIFFQALEKSKCIDKVV-FDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI 883
            N + K  + DLE  +Q L   +    +   D S+ARGL YYTG+++E        +GS+ +GGRYD+L   F  + +  VG S+GI+R+   + ++Q       R+T+ +VL+  + ++    A  L   L  + + +E Y   +K+ K    A      ++ ++GE E     + LKN+
Sbjct:  241 NENLKKGIQDLERLYQLLGDLQISQNLYKIDFSIARGLGYYTGIVYETTLNEMKSLGSVCSGGRYDHLTKNFSKENLQGVGASIGIDRLIVALSEMQLLDE---RSTQAKVLIACMHEEYFSYANRLAESLRQSGIFSEVYPEAQKIKKPFSYANHKGHEFVAVIGEEEFKSETLSLKNM 417          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_HELPH (Histidyl-tRNA synthetase OS=Helicobacter pylori (strain HPAG1) GN=hisS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.439e-16
Identity = 52/180 (28.89%), Postives = 91/180 (50.56%), Query Frame = -3
Query:  353 NSSAKLALDDLEIFFQALEKSKCIDKVV-FDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI 883
            N + K  + DLE  +Q L   +    +   D S+ARGL YYTG+++E        +GS+ +GGRYD+L   F  + +  VG S+GI+R+   + ++Q       R+T+ +VL+  + ++    A  L   L  + + +E Y   +K+ K    A      ++ ++GE E     + LKN+
Sbjct:  241 NENLKKGIQDLERLYQLLGDLQISQNLYKIDFSIARGLGYYTGIVYETTLNEMKSLGSVCSGGRYDHLTKNFSKENLQGVGASIGIDRLIVALNEMQLLDE---RSTQAKVLIACMHEEYFSYANRLAESLRQSGIFSEVYPEAQKIKKPFSYANHKGHEFVAVIGEEEFKSETLSLKNM 417          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_HELAH (Histidyl-tRNA synthetase OS=Helicobacter acinonychis (strain Sheeba) GN=hisS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.439e-16
Identity = 53/180 (29.44%), Postives = 90/180 (50.00%), Query Frame = -3
Query:  353 NSSAKLALDDLEIFFQALEKSKCIDKVV-FDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI 883
            N + K  + DLE  +Q L   +    +   D S+ARGL YYTG+++E        +GS+ +GGRYD+L   F  + +  VG S+GI+R+   +  +Q       R+T+ +VL+  + ++    A  L   L  + + +E Y   +K+ K    A      ++ I+GE E     + LKN+
Sbjct:  241 NENLKKGIQDLEKLYQLLGDLQISQNLYKIDFSIARGLGYYTGIVYETTLNDMKSLGSVCSGGRYDHLTKNFSKEDLQGVGASIGIDRLIVALSGMQLLDE---RSTQAKVLIACMNEEYFSYANRLAESLRQSGIFSEVYPEAQKIKKPFSYANHKGHEFVAIIGEEEFKSETLSLKNM 417          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_ANAVT (Histidyl-tRNA synthetase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=hisS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.439e-16
Identity = 59/202 (29.21%), Postives = 104/202 (51.49%), Query Frame = -3
Query:  290 ENSSAKLALDDLEIFFQALEKSKCIDK-VVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKL-PLAAELVSELWNAKVKAEYMVHKKVM-KLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 886
            E+    L + +LE     +      DK    DL++ARGL+YYTG ++E    G   +GSI +GGRY+ L+G F  +++P VG+S+G+ R+  I   ++      +  T  QV+V  + D L P   ++  +L  A +       K+ + K    A +  I + VI+G  E       LK++ + ++  ++ ++  EE++RRL
Sbjct:  262 ESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICSGGRYEELVGTFIGEKMPGVGISIGLTRL--ISRLLKAGILNTLPPTPAQVVVVNMQDNLMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIQFCVIIGADEAAAQKSSLKDLKSGEQVEVALADLPEEVKRRL 461          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_METM5 (Histidyl-tRNA synthetase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=hisS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.798e-16
Identity = 62/197 (31.47%), Postives = 102/197 (51.78%), Query Frame = -3
Query:  311 SSAKLALDDLEIFFQALEKSKCI-----DKVVFDLSLARGLDYYTGVIFEAIFK--GATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFV 880
            S  K  L + E   +ALE    I      + + +  +ARGLDYYTG++FE   K  GA QV     GGRYDNLI +F  +  PAVG + G +R+   ++  Q E   I      +    LL +   +A  L     + ++    ++ +K+ K ++ A    I  ++IVGE +++EG V LKN++T ++ +I  ++ +
Sbjct:  227 SKLKEKLAEFESSVEALENLDSILEFVPHEYIINFGIARGLDYYTGMVFEIYGKREGARQV---CGGGRYDNLIELFEGEPSPAVGFAYGFDRIMLNIDDFQVEEEAIF-VVPVKSSDMLLNECFKIAKTLRDAGKSVELD---LMGRKLNKALNYANNKGIKKVLIVGENDISEGKVALKNMETGEQSLIELNDIL 416          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_HELP2 (Histidyl-tRNA synthetase OS=Helicobacter pylori (strain P12) GN=hisS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.798e-16
Identity = 52/180 (28.89%), Postives = 91/180 (50.56%), Query Frame = -3
Query:  353 NSSAKLALDDLEIFFQALEKSKCIDKVV-FDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI 883
            N + K  + DLE  +Q L   +    +   D S+ARGL YYTG+++E        +GS+ +GGRYD+L   F  + +  VG S+GI+R+   + ++Q       R+T+ +VL+  + ++    A  L   L  + + +E Y   +K+ K    A      ++ ++GE E     + LKN+
Sbjct:  241 NENLKKGIQDLERLYQLLGDLQISQNLYKIDFSIARGLGYYTGIVYETTLNEMKSLGSVCSGGRYDHLTKNFSKENLQGVGASIGIDRLIVALSEMQLLDE---RSTQAKVLIACMHEEYFSYANRLAESLRQSGIFSEVYPEAQKIKKPFSYANHRGHEFVAVIGEEEFKSETLSLKNM 417          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_STRGG (Histidyl-tRNA synthetase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=hisS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.890e-16
Identity = 53/171 (30.99%), Postives = 93/171 (54.39%), Query Frame = -3
Query:  290 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKL-PLAAELVSELWNAKVKAEYMVHKKVMK-LIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 796
            D  L RGLDYYT   FE +  G     ++  GGRYD L  M G  ++P+VG +LG++R    +E    E  ++   + T V    LG++   +   +V+EL  A V A++    + +K  +  A  S   + ++ GER+L EG+V+LK++++ ++  ++ +    E+ +RL
Sbjct:  252 DEKLVRGLDYYTRTTFEFVHDGLGAQSAVGGGGRYDGLSEMIGGPELPSVGWALGVDRTVLALE---AEGIELDLPSTTSVYAVPLGEEARRVLFGVVTELRRAGVAADFAFGGRGLKGAMKSANRSGARYTLVAGERDLAEGVVQLKDMESGEQGPVALAEVAAELTKRL 419          
The following BLAST results are available for this feature:
BLAST of CV884405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
SYH_HELPG3.399e-1628.89Histidyl-tRNA synthetase OS=Helicobacter pylori (s... [more]
SYH_WOLTR4.439e-1630.72Histidyl-tRNA synthetase OS=Wolbachia sp. subsp. B... [more]
SYH_PYRIL4.439e-1629.76Histidyl-tRNA synthetase OS=Pyrobaculum islandicum... [more]
SYH_HELPY4.439e-1628.89Histidyl-tRNA synthetase OS=Helicobacter pylori GN... [more]
SYH_HELPH4.439e-1628.89Histidyl-tRNA synthetase OS=Helicobacter pylori (s... [more]
SYH_HELAH4.439e-1629.44Histidyl-tRNA synthetase OS=Helicobacter acinonych... [more]
SYH_ANAVT4.439e-1629.21Histidyl-tRNA synthetase OS=Anabaena variabilis (s... [more]
SYH_METM55.798e-1631.47Histidyl-tRNA synthetase OS=Methanococcus maripalu... [more]
SYH_HELP25.798e-1628.89Histidyl-tRNA synthetase OS=Helicobacter pylori (s... [more]
SYH_STRGG9.890e-1630.99Histidyl-tRNA synthetase OS=Streptomyces griseus s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884405 ID=CV884405; Name=CV884405; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTCATCAAAATTCTTTAATTAAAATTCTCGAATCT
ATAAAATGACAACCATTATAATATCGGACAATTTCTACAGGGGAAAATGG
GAGAAAAAAACAAACAACAAATCATCTTCAATTCAATTTTTTACACGTTC
GTTACCAATTTGTCGAGATGCAGATATCAGACATGCCGTTGCAGCTAATG
ACATGCAGATTAATTGATATTCCAAGCGTTGTGTAACGTAGCAGAATGGC
TTAAAGTTGTGCTTCAACTAAATATTACGTTCATTGGTTCAATCGTCTTT
GAATTTCCTCAACAAAGTTACTTCTGGAAATAACCTCCTCTTGAGTGGTG
TCAATGTTCTTTAATTTTACTATTCCTTCATTCAGCTCGCGCTCACCCAC
AATTACCATCCAAGGGATTTTCGACTCCCTGGCACGATCAATGAGCTTCA
TCACTTTCTTATGGACCATGTATTCTGCTTTCACCTTGGCATTCCACAGC
TCGCTGACCAGTTCAGCAGCTAGAGGAAGTTTATCCCCGAGCAAGCCCAC
AAGTACTTGCGTCTCGGTGGCTCGAATTATCTGGTTCCTTTCTTTTTGAA
TCTGCTCCATTATAGTAAAGACTCGCTCAATTCCAAGACTGACACCAACT
GCAGGAACCTGCTTTGTACCAAACATTCCGATGAGGTTGTCATAACGTCC
ACCAGCTGCAATTGAACCAACCTGTGTGGCCCCTTTGAAAATGGCTTCAA
ATATGACACCAGTGTAATAGTCAAGACCTCTTGCAAGACTCAAATCAAAA
ACCACTTTATCAATGCACTTTGACTTTTCTAGAGCTTGAAAAAAAATTTC
AAGGTCATCCAATGCAAGTTTAGCTGAACTGTTTTCTAAAA
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