CV884405
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_HELPG (Histidyl-tRNA synthetase OS=Helicobacter pylori (strain G27) GN=hisS PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.399e-16 Identity = 52/180 (28.89%), Postives = 91/180 (50.56%), Query Frame = -3 Query: 353 NSSAKLALDDLEIFFQALEKSKCIDKVV-FDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI 883 N + K + DLE +Q L + + D S+ARGL YYTG+++E +GS+ +GGRYD+L F + + VG S+GI+R+ + ++Q R+T+ +VL+ + ++ A L L + + +E Y +K+ K A ++ ++GE E + LKN+ Sbjct: 241 NENLKKGIQDLERLYQLLGDLQISQNLYKIDFSIARGLGYYTGIVYETTLNDMKSLGSVCSGGRYDHLTKNFSKENLQGVGASIGIDRLIVALSEMQLLDE---RSTQAKVLIACMHEEYFSYANRLAESLRQSGIFSEVYPEAQKIKKPFSYANHKGHEFVAVIGEEEFKSETLSLKNM 417
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_WOLTR (Histidyl-tRNA synthetase OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=hisS PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.439e-16 Identity = 51/166 (30.72%), Postives = 84/166 (50.60%), Query Frame = -3 Query: 290 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 787 L RGLDYY +FE + + G++ AGGRYDNL+ G K PA+G + GIER+ ++ N ++ LV + + A L +EL + Y + + + +A ++ +I G EL +K+KN+DT +E++I+ N +E I + L Sbjct: 253 LVRGLDYYCHTVFEFVIEDFGAQGAVFAGGRYDNLVSSVGGKYTPAIGFAGGIERIMELI-------NYSMKGDRPICLVPIGREAEEHALTLANELRRNGLYVIYEYNGALKNRMKKASQANAKAALIFGNEELGSKTLKIKNMDTGEEKIIAYGNIMENIHQTL 411
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_PYRIL (Histidyl-tRNA synthetase OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=hisS PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.439e-16 Identity = 50/168 (29.76%), Postives = 97/168 (57.74%), Query Frame = -3 Query: 338 LEKSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTI--MEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMK-LIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQE 832 LE + +DK FD+S+ RGLDYYTG++FEA F G ++ ++ GGRYD+L+ ++ ++PA+G ++G+ER+ +E ++K + I + D P A + L +A + +K +K + + + +++I+G++EL +G+VK++++ +E Sbjct: 252 LEAAVSLDKFRFDMSIVRGLDYYTGMVFEA-FAGEYKL-AVGGGGRYDDLLELYSGVKMPALGFAIGVERLMEAVGLEGVEKPLDYYIYIFD--------DDAYPYAVAIAKRLRSAGYSVVVELGEKNLKEVFEYILKIGTRYLIIIGKKELEKGVVKIRDLQRREE 409
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_HELPY (Histidyl-tRNA synthetase OS=Helicobacter pylori GN=hisS PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.439e-16 Identity = 52/180 (28.89%), Postives = 91/180 (50.56%), Query Frame = -3 Query: 353 NSSAKLALDDLEIFFQALEKSKCIDKVV-FDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI 883 N + K + DLE +Q L + + D S+ARGL YYTG+++E +GS+ +GGRYD+L F + + VG S+GI+R+ + ++Q R+T+ +VL+ + ++ A L L + + +E Y +K+ K A ++ ++GE E + LKN+ Sbjct: 241 NENLKKGIQDLERLYQLLGDLQISQNLYKIDFSIARGLGYYTGIVYETTLNEMKSLGSVCSGGRYDHLTKNFSKENLQGVGASIGIDRLIVALSEMQLLDE---RSTQAKVLIACMHEEYFSYANRLAESLRQSGIFSEVYPEAQKIKKPFSYANHKGHEFVAVIGEEEFKSETLSLKNM 417
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_HELPH (Histidyl-tRNA synthetase OS=Helicobacter pylori (strain HPAG1) GN=hisS PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.439e-16 Identity = 52/180 (28.89%), Postives = 91/180 (50.56%), Query Frame = -3 Query: 353 NSSAKLALDDLEIFFQALEKSKCIDKVV-FDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI 883 N + K + DLE +Q L + + D S+ARGL YYTG+++E +GS+ +GGRYD+L F + + VG S+GI+R+ + ++Q R+T+ +VL+ + ++ A L L + + +E Y +K+ K A ++ ++GE E + LKN+ Sbjct: 241 NENLKKGIQDLERLYQLLGDLQISQNLYKIDFSIARGLGYYTGIVYETTLNEMKSLGSVCSGGRYDHLTKNFSKENLQGVGASIGIDRLIVALNEMQLLDE---RSTQAKVLIACMHEEYFSYANRLAESLRQSGIFSEVYPEAQKIKKPFSYANHKGHEFVAVIGEEEFKSETLSLKNM 417
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_HELAH (Histidyl-tRNA synthetase OS=Helicobacter acinonychis (strain Sheeba) GN=hisS PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.439e-16 Identity = 53/180 (29.44%), Postives = 90/180 (50.00%), Query Frame = -3 Query: 353 NSSAKLALDDLEIFFQALEKSKCIDKVV-FDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI 883 N + K + DLE +Q L + + D S+ARGL YYTG+++E +GS+ +GGRYD+L F + + VG S+GI+R+ + +Q R+T+ +VL+ + ++ A L L + + +E Y +K+ K A ++ I+GE E + LKN+ Sbjct: 241 NENLKKGIQDLEKLYQLLGDLQISQNLYKIDFSIARGLGYYTGIVYETTLNDMKSLGSVCSGGRYDHLTKNFSKEDLQGVGASIGIDRLIVALSGMQLLDE---RSTQAKVLIACMNEEYFSYANRLAESLRQSGIFSEVYPEAQKIKKPFSYANHKGHEFVAIIGEEEFKSETLSLKNM 417
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_ANAVT (Histidyl-tRNA synthetase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=hisS PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.439e-16 Identity = 59/202 (29.21%), Postives = 104/202 (51.49%), Query Frame = -3 Query: 290 ENSSAKLALDDLEIFFQALEKSKCIDK-VVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKL-PLAAELVSELWNAKVKAEYMVHKKVM-KLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 886 E+ L + +LE + DK DL++ARGL+YYTG ++E G +GSI +GGRY+ L+G F +++P VG+S+G+ R+ I ++ + T QV+V + D L P ++ +L A + K+ + K A + I + VI+G E LK++ + ++ ++ ++ EE++RRL Sbjct: 262 ESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICSGGRYEELVGTFIGEKMPGVGISIGLTRL--ISRLLKAGILNTLPPTPAQVVVVNMQDNLMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIQFCVIIGADEAAAQKSSLKDLKSGEQVEVALADLPEEVKRRL 461
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_METM5 (Histidyl-tRNA synthetase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=hisS PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 5.798e-16 Identity = 62/197 (31.47%), Postives = 102/197 (51.78%), Query Frame = -3 Query: 311 SSAKLALDDLEIFFQALEKSKCI-----DKVVFDLSLARGLDYYTGVIFEAIFK--GATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFV 880 S K L + E +ALE I + + + +ARGLDYYTG++FE K GA QV GGRYDNLI +F + PAVG + G +R+ ++ Q E I + LL + +A L + ++ ++ +K+ K ++ A I ++IVGE +++EG V LKN++T ++ +I ++ + Sbjct: 227 SKLKEKLAEFESSVEALENLDSILEFVPHEYIINFGIARGLDYYTGMVFEIYGKREGARQV---CGGGRYDNLIELFEGEPSPAVGFAYGFDRIMLNIDDFQVEEEAIF-VVPVKSSDMLLNECFKIAKTLRDAGKSVELD---LMGRKLNKALNYANNKGIKKVLIVGENDISEGKVALKNMETGEQSLIELNDIL 416
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_HELP2 (Histidyl-tRNA synthetase OS=Helicobacter pylori (strain P12) GN=hisS PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 5.798e-16 Identity = 52/180 (28.89%), Postives = 91/180 (50.56%), Query Frame = -3 Query: 353 NSSAKLALDDLEIFFQALEKSKCIDKVV-FDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAE-YMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI 883 N + K + DLE +Q L + + D S+ARGL YYTG+++E +GS+ +GGRYD+L F + + VG S+GI+R+ + ++Q R+T+ +VL+ + ++ A L L + + +E Y +K+ K A ++ ++GE E + LKN+ Sbjct: 241 NENLKKGIQDLERLYQLLGDLQISQNLYKIDFSIARGLGYYTGIVYETTLNEMKSLGSVCSGGRYDHLTKNFSKENLQGVGASIGIDRLIVALSEMQLLDE---RSTQAKVLIACMHEEYFSYANRLAESLRQSGIFSEVYPEAQKIKKPFSYANHRGHEFVAVIGEEEFKSETLSLKNM 417
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_STRGG (Histidyl-tRNA synthetase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=hisS PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 9.890e-16 Identity = 53/171 (30.99%), Postives = 93/171 (54.39%), Query Frame = -3 Query: 290 DLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKL-PLAAELVSELWNAKVKAEYMVHKKVMK-LIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRL 796 D L RGLDYYT FE + G ++ GGRYD L M G ++P+VG +LG++R +E E ++ + T V LG++ + +V+EL A V A++ + +K + A S + ++ GER+L EG+V+LK++++ ++ ++ + E+ +RL Sbjct: 252 DEKLVRGLDYYTRTTFEFVHDGLGAQSAVGGGGRYDGLSEMIGGPELPSVGWALGVDRTVLALE---AEGIELDLPSTTSVYAVPLGEEARRVLFGVVTELRRAGVAADFAFGGRGLKGAMKSANRSGARYTLVAGERDLAEGVVQLKDMESGEQGPVALAEVAAELTKRL 419 The following BLAST results are available for this feature:
BLAST of CV884405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 401
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884405 ID=CV884405; Name=CV884405; organism=Citrus sinensis; type=EST; length=891bpback to top |