CV884405

Overview
NameCV884405
Unique NameCV884405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3337 contig Csv1_Contig3337:514..1404. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SHESR (Histidyl-tRNA synthetase OS=Shewanella sp. (strain MR-7) GN=hisS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.890e-16
Identity = 55/155 (35.48%), Postives = 79/155 (50.97%), Query Frame = -3
Query:  335 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAEYMVH---KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEE 787
            L RGLDYY   +FE +       G++ AGGRYD L+   G K  PAVG ++G+ER+  ++E +  E  Q I A    V V  +GD  L  A ++  EL +       M H       K I RA +S     +++GE EL EG+V +K +    E+
Sbjct:  257 LVRGLDYYNRTVFEWVTNSLGSQGTVLAGGRYDGLVAQLGGKDTPAVGFAMGLERIVLLLETL--ELTQDIPAA-VDVYVAAMGDSCLVEAIKVAQELRSTLPTLRVMSHCGGGNFKKQIKRADKSGAQVALLIGEEELAEGVVTVKYLRNDNEQ 408          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SHESM (Histidyl-tRNA synthetase OS=Shewanella sp. (strain MR-4) GN=hisS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.890e-16
Identity = 55/155 (35.48%), Postives = 79/155 (50.97%), Query Frame = -3
Query:  335 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAEYMVH---KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEE 787
            L RGLDYY   +FE +       G++ AGGRYD L+   G K  PAVG ++G+ER+  ++E +  E  Q I A    V V  +GD  L  A ++  EL +       M H       K I RA +S     +++GE EL EG+V +K +    E+
Sbjct:  257 LVRGLDYYNRTVFEWVTNSLGSQGTVLAGGRYDGLVAQLGGKDTPAVGFAMGLERIVLLLETL--ELTQDIPAA-VDVYVAAMGDSCLVEAIKVAQELRSTLPTLRVMSHCGGGNFKKQIKRADKSGAQVALLIGEEELAEGVVTVKYLRNDNEQ 408          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SHESA (Histidyl-tRNA synthetase OS=Shewanella sp. (strain ANA-3) GN=hisS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.890e-16
Identity = 55/155 (35.48%), Postives = 79/155 (50.97%), Query Frame = -3
Query:  335 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDK-LPLAAELVSELWNAKVKAEYMVH---KKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEE 787
            L RGLDYY   +FE +       G++ AGGRYD L+   G K  PAVG ++G+ER+  ++E +  E  Q I A    V V  +GD  L  A ++  EL +       M H       K I RA +S     +++GE EL EG+V +K +    E+
Sbjct:  257 LVRGLDYYNRTVFEWVTNSLGSQGTVLAGGRYDGLVAQLGGKDTPAVGFAMGLERIVLLLETL--ELTQDIPAA-VDVYVAAMGDSCLVEAIKVAQELRSTLPTLRVMSHCGGGNFKKQIKRADKSGAQVALLIGEEELAEGVVTVKYLRNDNEQ 408          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SILPO (Histidyl-tRNA synthetase OS=Silicibacter pomeroyi GN=hisS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.292e-15
Identity = 58/164 (35.37%), Postives = 94/164 (57.32%), Query Frame = -3
Query:  353 DKVVFDLSLARGLDYYTGVIFEA-----IF--KGAT-QVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLG-DKLPLAAELVSELWNAKVKAEYMV--HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI 811
            D++V D S+ RGL YYTG ++EA     IF  KG   Q GS++ GGRYD+L+  F  ++VPA GVS+G++R+   +    +E+ +I  A    V+V ++  D++     +V+EL NA ++AE  +   K     +  A +   P  VI G  E   G+V++K++
Sbjct:  294 DRIVIDPSVVRGLGYYTGPVYEAELTFEIFDEKGRKRQFGSVSGGGRYDDLVKRFTGQEVPATGVSIGVDRLLAAL----REKGRIRTAERGPVVVTVMDRDRMADYQAMVAELRNAGIRAEVYLGNPKNFGNQLKYADKRNSPVAVIEGGDERANGVVQIKDL 453          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_PSEHT (Histidyl-tRNA synthetase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=hisS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.292e-15
Identity = 54/163 (33.13%), Postives = 84/163 (51.53%), Query Frame = -3
Query:  332 KVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKV-KAEYMVHK---KVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEV 808
            K   +  L RGLDYY   +FE I       G++ AGGRYD L+   G K  PAVG ++G+ER+  +++ ++   +  IR     V +  +GDK  + A +++      V     MVH       K + RA +S     VI+GE EL +G+V +K +   +E+V
Sbjct:  250 KYTINEKLVRGLDYYNRTVFEWITDSLGAQGTVCAGGRYDGLVEQLGGKATPAVGFAMGLERLVLLLQALECVGD--IR-RNADVYLASMGDKASIQAPIIAATLRRDVPNLRVMVHAGGGNFKKQLKRADKSDALVAVIIGEDELEQGVVTIKYLRERKEQV 409          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_METM7 (Histidyl-tRNA synthetase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=hisS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.292e-15
Identity = 63/191 (32.98%), Postives = 96/191 (50.26%), Query Frame = -3
Query:  329 SSAKLALDDLEIFFQALEKSKCI-----DKVVFDLSLARGLDYYTGVIFEAIFK--GATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVI 880
            S  K  L + E    ALE    I      + + +  +ARGLDYYTG++FE   K  GA QV     GGRYDNLI +F  +  PAVG + G +R+   ++  + E   I      +    LL + L +A  L       K     ++ +K+ K ++ A    I  ++IVGE ++ EG V LKN++T ++ +I
Sbjct:  227 SKLKEKLAEFESSIAALENLDSILEFVPHEYIINFGIARGLDYYTGMVFEIYGKREGARQV---CGGGRYDNLIELFEGEPSPAVGFAYGFDRIMLNIDDFEVEEESIF-VVPVKSSDMLLNECLKIAKTLREA---GKAVELDLMGRKLNKALNYANTKGIKKVIIVGENDILEGKVALKNMETGEQSLI 410          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_CLOTH (Histidyl-tRNA synthetase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=hisS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.292e-15
Identity = 57/195 (29.23%), Postives = 102/195 (52.31%), Query Frame = -3
Query:  299 DDLEIFFQALE---KSKCIDKVVFDLSLARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQ---VLVGLLGDKLPLAAE-LVSELWNAKVKAEY-MVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQ 859
            DD +  F+ L+   ++  ID  + D ++ RGLDYYT  +FE +       G++  GGRYD L+   G K  P +G ++G+ER+  +ME      NQ I+  E++   + +  +GDK    AE +V EL    + AE  ++ K +   +  A +    + + +G+ E+  G   LKN++T +++ IS    +  ++
Sbjct:  229 DDCKNHFEGLKAGLENLGIDYKI-DKNIVRGLDYYTKTVFEFVSDNIGAQGTVCGGGRYDGLVEACGGKPTPGIGFAMGLERLLMVME------NQGIKFPESKKPDIFIAAIGDKANSYAEKMVYELRKEGLSAEKDLMGKSLKAQMKYADKLGAKYSIALGDDEIESGKAVLKNMETGEQKEISLDTLISRLK 416          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_METM6 (Histidyl-tRNA synthetase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=hisS PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.687e-15
Identity = 63/191 (32.98%), Postives = 96/191 (50.26%), Query Frame = -3
Query:  329 SSAKLALDDLEIFFQALEKSKCI-----DKVVFDLSLARGLDYYTGVIFEAIFK--GATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVI 880
            S  K  L + E    ALE    I      + + +  +ARGLDYYTG++FE   K  GA QV     GGRYDNLI +F  +  PAVG + G +R+   ++  + E   I      +    LL + L +A  L       K     ++ +K+ K ++ A    I  ++IVGE ++ EG V LKN++T ++ +I
Sbjct:  227 SKLKEKLSEFESSVTALENLDSILEFVPHEYIINFGIARGLDYYTGMVFEIYGKREGARQV---CGGGRYDNLIELFEGEPSPAVGFAYGFDRIMLNIDDFEVEEESIF-VVPVKSSDMLLNECLKIAKTLRDA---GKAVELDLMGRKLNKALNYANTKGIKKVLIVGENDILEGKVALKNMETGEQSLI 410          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SILST (Histidyl-tRNA synthetase OS=Silicibacter sp. (strain TM1040) GN=hisS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.203e-15
Identity = 63/187 (33.69%), Postives = 102/187 (54.55%), Query Frame = -3
Query:  284 DKVVFDLSLARGLDYYTGVIFEA-----IF--KGAT-QVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLVGLLG-DKLPLAAELVSELWNAKVKAEYMV--HKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNIDTTQEEVISRSNFVEEIQRRLNQ 811
            D+++ D S+ RGL YYTG +FEA     IF  KG   Q GS+A GGRYD L+  F  ++VPAVG+S+G++R+   +    +E+ ++       V+V ++  D++     +V+EL  A ++AE  +   K     +  A +   P  VI G  E + G+V++K  D      I+ S  +EE + R +Q
Sbjct:  295 DRILIDPSIVRGLGYYTGPVFEAELTFEIFDEKGRKRQFGSVAGGGRYDGLVKRFTGQEVPAVGLSIGVDRLLAAL----REKGRLAATPTGPVVVTVMDRDRMADYQAMVAELRQAGIRAEVYLGNPKNFGNQLKYADKRHSPIAVIEGGDEKDRGVVQIK--DLILGAKIAESATLEEWKERPSQ 475          
BLAST of CV884405 vs. ExPASy Swiss-Prot
Match: SYH_SHESW (Histidyl-tRNA synthetase OS=Shewanella sp. (strain W3-18-1) GN=hisS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.203e-15
Identity = 57/171 (33.33%), Postives = 93/171 (54.39%), Query Frame = -3
Query:  296 LARGLDYYTGVIFEAIFKGATQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFTIMEQIQKERNQIIRATETQVLV---GLLGDKLPLAAELVSELWNAKVKAEYMVHKKVMKLIDRARESKIPWMVIVGERELNEGIVKLKNI--DTTQEEVI--SRSNFVEEIQR 787
            L RGLDYY   +FE +       G++ AGGRYD L+   G K  PAVG ++G+ER+  ++E +   ++ I  A +  V       L + + +A EL S L + KV + +     V K + RA +S     +++GE EL EG+V +K++  D  Q++V   + S F+ E+ +
Sbjct:  257 LVRGLDYYNRTVFEWVTNSLGSQGTVLAGGRYDGLVAQLGGKDTPAVGFAMGLERIVLLLETLGLTQD-IPAAVDVYVTAMGENCLVEAIKVAQELRSALPHLKVMS-HCGGGNVKKQMKRADKSGASVALLIGEEELAEGMVTVKHLRNDNEQQQVARNALSAFLAELTK 425          
The following BLAST results are available for this feature:
BLAST of CV884405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
SYH_SHESR9.890e-1635.48Histidyl-tRNA synthetase OS=Shewanella sp. (strain... [more]
SYH_SHESM9.890e-1635.48Histidyl-tRNA synthetase OS=Shewanella sp. (strain... [more]
SYH_SHESA9.890e-1635.48Histidyl-tRNA synthetase OS=Shewanella sp. (strain... [more]
SYH_SILPO1.292e-1535.37Histidyl-tRNA synthetase OS=Silicibacter pomeroyi ... [more]
SYH_PSEHT1.292e-1533.13Histidyl-tRNA synthetase OS=Pseudoalteromonas halo... [more]
SYH_METM71.292e-1532.98Histidyl-tRNA synthetase OS=Methanococcus maripalu... [more]
SYH_CLOTH1.292e-1529.23Histidyl-tRNA synthetase OS=Clostridium thermocell... [more]
SYH_METM61.687e-1532.98Histidyl-tRNA synthetase OS=Methanococcus maripalu... [more]
SYH_SILST2.203e-1533.69Histidyl-tRNA synthetase OS=Silicibacter sp. (stra... [more]
SYH_SHESW2.203e-1533.33Histidyl-tRNA synthetase OS=Shewanella sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884405 ID=CV884405; Name=CV884405; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTCATCAAAATTCTTTAATTAAAATTCTCGAATCT
ATAAAATGACAACCATTATAATATCGGACAATTTCTACAGGGGAAAATGG
GAGAAAAAAACAAACAACAAATCATCTTCAATTCAATTTTTTACACGTTC
GTTACCAATTTGTCGAGATGCAGATATCAGACATGCCGTTGCAGCTAATG
ACATGCAGATTAATTGATATTCCAAGCGTTGTGTAACGTAGCAGAATGGC
TTAAAGTTGTGCTTCAACTAAATATTACGTTCATTGGTTCAATCGTCTTT
GAATTTCCTCAACAAAGTTACTTCTGGAAATAACCTCCTCTTGAGTGGTG
TCAATGTTCTTTAATTTTACTATTCCTTCATTCAGCTCGCGCTCACCCAC
AATTACCATCCAAGGGATTTTCGACTCCCTGGCACGATCAATGAGCTTCA
TCACTTTCTTATGGACCATGTATTCTGCTTTCACCTTGGCATTCCACAGC
TCGCTGACCAGTTCAGCAGCTAGAGGAAGTTTATCCCCGAGCAAGCCCAC
AAGTACTTGCGTCTCGGTGGCTCGAATTATCTGGTTCCTTTCTTTTTGAA
TCTGCTCCATTATAGTAAAGACTCGCTCAATTCCAAGACTGACACCAACT
GCAGGAACCTGCTTTGTACCAAACATTCCGATGAGGTTGTCATAACGTCC
ACCAGCTGCAATTGAACCAACCTGTGTGGCCCCTTTGAAAATGGCTTCAA
ATATGACACCAGTGTAATAGTCAAGACCTCTTGCAAGACTCAAATCAAAA
ACCACTTTATCAATGCACTTTGACTTTTCTAGAGCTTGAAAAAAAATTTC
AAGGTCATCCAATGCAAGTTTAGCTGAACTGTTTTCTAAAA
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