CV884403

Overview
NameCV884403
Unique NameCV884403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884403 vs. ExPASy Swiss-Prot
Match: YHH5_SCHPO (Uncharacterized oxidoreductase C28F2.05 OS=Schizosaccharomyces pombe GN=SPBC28F2.05c PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.357e-14
Identity = 60/241 (24.90%), Postives = 112/241 (46.47%), Query Frame = 1
Query:  139 VLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELFITTKLWCSDAHRDLVVPALKKSLKTLQIEYVDLYLIH---WPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFATIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWGTNQVMNNEALKQIAAVHGKTVAQVCLRWIIEQGATAAVKSFNKERLKENLE 852
            V+E++ LG R  D+A  Y  E+   +AI +     +   RE++ + TK+  S    +    A+++SL+      +D+ LIH   WP+    S                    W A+ + Q+ G    IGVSN++   +E I++     P +NQVE +    +   + +C +  I+V AFSPL            +++  L  ++  + KT A + LR+ +++G +   K+ +   + EN++
Sbjct:   30 VIEALSLGIRVIDSAITYRNEKECEQAIQDFCHQNVNIKREDITLITKIPDSLQGFERTWKAVEQSLRRTGRPKLDVVLIHSPKWPVRRIES--------------------WRALLQHQKEGRINKIGVSNYNIHHLEEIISLGLPLPAINQVEFSAFNNRPTFLSYCFNHGILVQAFSPL-------TRGYRLSDIRLLDLSLKYNKTPANILLRYCLQKGVSPIFKASSFVHIHENVK 243          
BLAST of CV884403 vs. ExPASy Swiss-Prot
Match: Y1669_ARATH (Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana GN=At1g06690 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.500e-13
Identity = 76/282 (26.95%), Postives = 117/282 (41.49%), Query Frame = 1
Query:  124 AMKSAVLESIKLGYRHFDTASLYGTERALGEAIAEALKLGLVASREELF------ITTKLWCSDAH--RDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVW------EAMEECQRHGLTKSIGVSNFSPKKIETI---LAFATIPPTVNQVEMN---PAWQQRKLVEFCKSKSIIVTAFSPLGAVGSSWG----------------TNQVMNN-----EALKQIAAVHGKTVAQVCLRWIIEQGATAAVK-SFNKERLKE 843
            A K A   S+  G   FDTA +YG++ +LG   +E L    +  R+E +      + TK         R+ VV ALK SL  L++  VDLY +HWP                        G+W      + + +    GL K++GVSN+S K++      L    IP   NQV  +    A +Q  +   C    + + A+SP+ A G+  G                T + +         +KQI   + KT  Q+ L W++ QG    +  + N E+ KE
Sbjct:   86 AAKGAFDTSLDNGIDFFDTAEVYGSKFSLGAISSETLLGRFIRERKERYPGAEVSVATKFAALPWRFGRESVVTALKDSLSRLELSSVDLYQLHWP------------------------GLWGNEGYLDGLGDAVEQGLVKAVGVSNYSEKRLRDAYERLKKRGIPLASNQVNYSLIYRAPEQTGVKAACDELGVTLIAYSPI-AQGALTGKYTPENPPSGPRGRIYTREFLTKLQPLLNRIKQIGENYSKTPTQIALNWLVAQGNVIPIPGAKNAEQAKE 342          
BLAST of CV884403 vs. ExPASy Swiss-Prot
Match: GS69_BACSU (General stress protein 69 OS=Bacillus subtilis GN=yhdN PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.404e-11
Identity = 72/280 (25.71%), Postives = 117/280 (41.79%), Query Frame = 1
Query:   94 GSAVDNIDESAMKSAVLESIKLGYRHFDTASLYG---TERALGEAIAEALKLGLVASREELFITTKL---WCSD-----AHRDLVVPALKKSLKTLQIEYVDLYLIHWPMSAKPSEKLRNDIPEEDLVSLDYNGVWEAMEECQRHGLTKSIGVSNFSPKKIETILAFA---TIPPTVNQVEMNPAWQQRKLVEFCKSKSIIVTAFSPL--GAVGSSWGTNQVMNNEALKQ-------------IAAV----------HGKTVAQVCLRWIIEQ-GATAAV 813
            G+     DE      +  ++  G    DTA  YG   +E  +G+AI E  K      R+++ + TK    W ++     A+R  +V  ++ SLK LQ +Y+DLY +HWP    P E+                   E M+E    G  ++IGVSNFS ++++T  A A   TI P  N  E      +  ++ + K   I    +  L  G +            + L+              ++AV          +GK+V  + +RWI++Q GA  A+
Sbjct:   25 GTMWGGTDEKTSIETIRAALDQGITLIDTAPAYGFGQSEEIVGKAIKEYGK------RDQVILATKTALDWKNNQLFRHANRARIVEEVENSLKRLQTDYIDLYQVHWPDPLVPIEETA-----------------EVMKELYDAGKIRAIGVSNFSIEQMDTFRAVAPLHTIQPPYNLFERE---MEESVLPYAKDNKITTLLYGSLCRGLLTGKMTEEYTFEGDDLRNHDPKFQKPRFKEYLSAVNQLDKLAKTRYGKSVIHLAVRWILDQPGADIAL 278          
The following BLAST results are available for this feature:
BLAST of CV884403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
YHH5_SCHPO1.357e-1424.90Uncharacterized oxidoreductase C28F2.05 OS=Schizos... [more]
Y1669_ARATH1.500e-1326.95Uncharacterized oxidoreductase At1g06690, chloropl... [more]
GS69_BACSU1.404e-1125.71General stress protein 69 OS=Bacillus subtilis GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C01_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884403 ID=CV884403; Name=CV884403; organism=Citrus sinensis; type=EST; length=862bp
TGCGACTCCGAACCGATGAATGTATCCATCAACGTCCCAGAAGTAAAGCT
CAGCTCAGCCTCCGGTCACCGGAAGATGCCGGTGATCGGGCTGGGCTCGG
CGGTGGACAACATAGATGAAAGTGCCATGAAATCAGCAGTACTGGAATCG
ATCAAGCTTGGTTACAGACACTTCGACACAGCTTCGCTGTACGGAACAGA
GAGGGCCCTGGGAGAAGCAATAGCTGAAGCACTTAAACTTGGGCTTGTCG
CATCTCGCGAAGAGCTCTTCATTACTACTAAGCTCTGGTGCAGCGACGCT
CATCGTGATCTCGTTGTACCCGCTCTGAAGAAGTCTCTTAAGACGCTTCA
GATTGAATATGTTGACCTGTACCTCATTCATTGGCCAATGAGTGCTAAGC
CAAGTGAGAAATTACGAAACGATATACCCGAAGAAGATCTTGTATCACTG
GACTACAACGGTGTGTGGGAAGCCATGGAAGAGTGCCAGAGGCATGGCCT
CACTAAGTCCATTGGTGTCAGCAACTTCTCTCCTAAGAAGATTGAGACCA
TACTCGCCTTCGCTACCATCCCTCCTACTGTCAATCAGGTGGAGATGAAC
CCTGCCTGGCAACAGAGAAAGCTCGTAGAATTTTGCAAGTCCAAAAGTAT
TATTGTTACCGCATTCTCTCCTTTGGGAGCCGTCGGGTCCAGCTGGGGCA
CGAATCAAGTTATGAACAATGAAGCACTGAAGCAGATTGCCGCCGTTCAT
GGCAAAACTGTGGCTCAGGTTTGTCTTCGATGGATAATTGAGCAAGGGGC
AACTGCGGCTGTTAAGAGCTTCAACAAGGAGAGACTGAAAGAGAACTTGG
AGATCTTTGACT
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