CV884401

Overview
NameCV884401
Unique NameCV884401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884401_ssr847 microsatellite CV884401_ssr847:847..858. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3336 contig Csv1_Contig3336:455..1319. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCD_RICFE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia felis GN=sucD PE=3 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 4.174e-72
Identity = 133/203 (65.52%), Postives = 160/203 (78.82%), Query Frame = -3
Query:  214 LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQ 822
            +++VVCITEGIP  DMV+VK AL   SKTRLIGPNCPG+I PGECKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT VGLGQSTCVGIGGDP NGTNFVDC++ FL D +T              EDAA  IK+S  +KP+V+FIAG+TAPPG+RMGHAGAI++GGKG+A+DK++ L+ AGVT+  SPA IG  M ++  +
Sbjct:   90 IEVVVCITEGIPVLDMVKVKRALVG-SKTRLIGPNCPGVITPGECKIGIMPGHIHKRGTIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPVNGTNFVDCIDMFLKDDETKAIIMIGEIGGNAEEDAAEFIKQSKIKKPIVSFIAGITAPPGKRMGHAGAIIAGGKGSAEDKLEALQSAGVTITRSPADIGKTMFDLLNK 291          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCD_RICBR (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=sucD PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 7.871e-71
Identity = 134/214 (62.62%), Postives = 160/214 (74.77%), Query Frame = -3
Query:  223 PFXXXXXXXXXXXELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEV 864
            PF            +++VVCITEGIP  DMVRVK AL   S+TRLIGPNCPGII P ECKIGIMPG+IH+ G +GIVSRSGTLTYEAV QTT VGLGQSTCVGIGGDP NGTNFVDC++ FL D +T              E+AA  IK S  +KP+V+FIAG+TAPPG+RMGHAGAI++GGKG+A+DK++ L+ AGVT+  SPA IG  ML++
Sbjct:   76 PFAADSILEAIDAGIEIVVCITEGIPVLDMVRVKRALVG-SRTRLIGPNCPGIITPDECKIGIMPGHIHRKGSIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPVNGTNFVDCIDMFLQDDETKAIIMIGEIGGDAEENAADFIKHSKIKKPIVSFIAGITAPPGKRMGHAGAIIAGGKGSAEDKLEALQSAGVTITRSPADIGKTMLDL 288          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCA_NEUCR (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Neurospora crassa GN=8D4.130 PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.754e-70
Identity = 135/209 (64.59%), Postives = 156/209 (74.64%), Query Frame = -3
Query:  205 LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTE---KPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRGL 822
            + L VCITEGIPQHDMVR+ + L  QSKTRL+GPNCPGII PG+CKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT  GLGQS  VGIGGDPF+GTNF+DCL+ FL D  T              E+AA  +KE  T+   KPVV+FIAG++APPGRRMGHAGAIV+GGKG A  KIK L  AGV V  SPA +G A+ + F +R L
Sbjct:  124 IPLAVCITEGIPQHDMVRITSMLKTQSKTRLVGPNCPGIIAPGQCKIGIMPGFIHKRGRIGIVSRSGTLTYEAVNQTTQAGLGQSLVVGIGGDPFSGTNFIDCLKVFLEDGDTDGIIMIGEIGGSAEEEAADFLKEYNTKNGGKPVVSFIAGISAPPGRRMGHAGAIVAGGKGGADSKIKALEAAGVVVERSPASLGKALRDEFVRRDL 332          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCD_RICTY (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia typhi GN=sucD PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.906e-70
Identity = 131/203 (64.53%), Postives = 160/203 (78.82%), Query Frame = -3
Query:  214 LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQ 822
            +++VVCITEGIP  DMV+VK AL   SKTRLIGPNCPG+I PGECKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT VGLGQSTC+GIGGDP NGT+FV+C+E FL D +T              EDAA  IK+S  +KP+V+FIAG+TAP  +RMGHAGAI+SGGKG+A+DK++ L+ AGVT+ +SPA IG  ML++  +
Sbjct:   90 IEVVVCITEGIPVLDMVKVKRALIG-SKTRLIGPNCPGVITPGECKIGIMPGHIHKTGIIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGGDPVNGTSFVECIEMFLQDDETKAIIMIGEIGGNAEEDAADFIKQSKIKKPIVSFIAGITAPSDKRMGHAGAIISGGKGSAKDKLEALQSAGVTITKSPADIGKTMLDLLNK 291          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCD_RICCN (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia conorii GN=sucD PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.906e-70
Identity = 131/203 (64.53%), Postives = 157/203 (77.34%), Query Frame = -3
Query:  214 LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQ 822
            +++VVCITEGIP  DMV+VK AL   SKTRLIGPNCPG+I PGECKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT VGLGQSTC+GIGGDP NGTNFVDC+E FL D +T              EDAA  IK+S  +KP+V+FIAG+TAPPG+RMGHAGAI+ G  G+A+DK++ L+ AGV +  SPA IG  ML++  +
Sbjct:   90 IEVVVCITEGIPVLDMVKVKRALVG-SKTRLIGPNCPGVITPGECKIGIMPGHIHKRGTIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGGDPVNGTNFVDCIEMFLKDDETKAIIMIGEIGGNAEEDAAEFIKQSKIKKPIVSFIAGITAPPGKRMGHAGAIIVGRTGSAEDKLEALQSAGVIITRSPADIGKTMLDLLNK 291          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCA_DROME (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Drosophila melanogaster GN=Scsalpha PE=2 SV=3)

HSP 1 Score: 265.003 bits (676), Expect = 3.906e-70
Identity = 133/206 (64.56%), Postives = 159/206 (77.18%), Query Frame = -3
Query:  214 LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKE--SGTE-KPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQ 822
            + L+VCITEG+PQHDMV+VK AL  QSK+RL+GPNCPGII P +CKIGIMPG+IHK G++G+VSRSGTLTYEAV QTT VGLGQ+ CVGIGGDPFNGT+F+DCLE FL DP+T              E AA  + E  SG + KPVV+FIAG++APPGRRMGHAGAI+SGGKG A DKI  L +AGV V  SPAK+G  + +  K+
Sbjct:  119 IPLIVCITEGVPQHDMVKVKHALISQSKSRLVGPNCPGIIAPEQCKIGIMPGHIHKRGKIGVVSRSGTLTYEAVHQTTEVGLGQTLCVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEIGGVAEEKAADYLTEYNSGIKAKPVVSFIAGVSAPPGRRMGHAGAIISGGKGGANDKIAALEKAGVIVTRSPAKMGHELFKEMKR 324          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCD_RICPR (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia prowazekii GN=sucD PE=3 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.939e-69
Identity = 130/203 (64.04%), Postives = 157/203 (77.34%), Query Frame = -3
Query:  214 LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQ 822
            +++VVCITEGIP  DM++VK AL   SKTRLIGPNCPG+I PGECKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT  GLGQSTCVGIGGDP NGT+FVDC+E FL D +T              EDAA  IK+S  +KP+V+FIAG+TAP  +RMGHAGAI+SGGKG+A+DK++ L+ AGV +  SPA IG  ML++  +
Sbjct:   90 IEVVVCITEGIPVLDMIKVKRALIG-SKTRLIGPNCPGVITPGECKIGIMPGHIHKIGDIGIVSRSGTLTYEAVAQTTAAGLGQSTCVGIGGDPVNGTSFVDCIEMFLQDDETKAIIMIGEIGGSAEEDAADFIKQSKIKKPIVSFIAGITAPADKRMGHAGAIISGGKGSAEDKVEVLQSAGVIITRSPADIGKTMLDLLNK 291          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCD_BACSU (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Bacillus subtilis GN=sucD PE=1 SV=3)

HSP 1 Score: 245.743 bits (626), Expect = 2.453e-64
Identity = 128/220 (58.18%), Postives = 153/220 (69.55%), Query Frame = -3
Query:  205 PFXXXXXXXXXXXELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRGL 864
            PF           ELDLV+CITE IP  DMV+VK  +  + KTRLIGPNCPG+I P ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q +  G+GQST VGIGGDP NGTNF+D L+ F  DP T              E+AA  +K + T KPVV FI G TAPPG+RMGHAGAI+SGGKGTA +KIKTL   G+ V E+P+ +G  +++V K++ L
Sbjct:   76 PFAADAIMEAVDAELDLVICITEHIPVLDMVKVKRFMEGK-KTRLIGPNCPGVITPEECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLSEAGVGQSTAVGIGGDPVNGTNFIDVLKAFNEDPDTHAVIMIGEIGGTAEEEAAEWVKANMT-KPVVGFIGGKTAPPGKRMGHAGAIISGGKGTADEKIKTLNACGIEVAETPSVMGETLIKVLKEKNL 293          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCA_SCHPO (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC16E8.17c PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.453e-64
Identity = 126/201 (62.69%), Postives = 146/201 (72.64%), Query Frame = -3
Query:  226 LVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKES----GTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLE 816
            L+V ITEGIPQHDM+RV   L  QSK+RL+GPNCPGII+PG+CKIGIMP +IHKPG +GIVSRSGTLTYEAV QTT   LGQS  +GIGGDPF GTNF+D L+ FL DP T              EDAA  I+ +     T KPVV+FIAG TAP GRRMGHAGAIV+GGKGTA  K + L  AGV +  SPA +GS ++E
Sbjct:  124 LIVAITEGIPQHDMLRVSDILKTQSKSRLVGPNCPGIIRPGQCKIGIMPSHIHKPGCIGIVSRSGTLTYEAVNQTTQTDLGQSLVIGIGGDPFPGTNFIDALKLFLDDPNTQGIILIGEIGGSAEEDAAEFIRAANASRSTPKPVVSFIAGATAPKGRRMGHAGAIVAGGKGTAAAKFEALEAAGVRISRSPATLGSLIVE 324          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCD_COXBU (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Coxiella burnetii GN=sucD PE=3 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 5.464e-64
Identity = 124/197 (62.94%), Postives = 147/197 (74.62%), Query Frame = -3
Query:  226 LVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLE 816
            LVVCITEGIP  DM+ VKA L +    R+IGPNCPG+I PGECKIGIMPG+IH+ G+VGIVSRSGTLTYEAV QTT +G GQSTCVGIGGDP  GT+F+D LE F  D QT              E+AA  I +S  +KPV+++IAG+TAPPG+RMGHAGAI++GGKGTA DK   L  AGV VV+SPA+IG  + E
Sbjct:   92 LVVCITEGIPVLDMLEVKAYLRQHPDVRMIGPNCPGVITPGECKIGIMPGHIHQRGKVGIVSRSGTLTYEAVNQTTQMGFGQSTCVGIGGDPIPGTSFIDVLEMFEKDSQTQAIVMVGEIGGTAEEEAAEFI-QSNVKKPVISYIAGVTAPPGKRMGHAGAIIAGGKGTAADKYAALEAAGVFVVKSPAEIGKGVAE 287          
The following BLAST results are available for this feature:
BLAST of CV884401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
SUCD_RICFE4.174e-7265.52Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICBR7.871e-7162.62Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCA_NEUCR1.754e-7064.59Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCD_RICTY3.906e-7064.53Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICCN3.906e-7064.53Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCA_DROME3.906e-7064.56Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCD_RICPR1.939e-6964.04Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_BACSU2.453e-6458.18Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCA_SCHPO2.453e-6462.69Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCD_COXBU5.464e-6462.94Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003B12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884401 ID=CV884401; Name=CV884401; organism=Citrus sinensis; type=EST; length=866bp
TTTTTTTTTTTTTTTGAAAAGCTTTATTAATTGTATAATCAATTCCCGTT
AGGTGCTGAATGGGGGGGAAAACTTTGAATTTCCAAGAACTCTACCAGAA
TCAAAATCAATTTCAAAATAAAAATGCTGAGAAGCACAATTTTTTGACAT
TGTGCAAAAAAGCTGTATAGAAATCTAGTGTTTCTTTTATCAAAACTAAC
TTGCCAGGCCACGTTGCTTGAAAACCTCAAGCATAGCAGAGCCAATTTTT
GCGGGAGACTCTACCACTGTCACTCCGGCTTCCCTGAGGGTCTTAATTTT
GTCTTGAGCCGTGCCCTTCCCACCAGAGACGATAGCTCCAGCATGACCCA
TACGGCGGCCAGGGGGAGCTGTTAGTCCAGCAATAAAAGCAACAACGGGC
TTCTCAGTCCCACTTTCCTTTATCAAGGCAGCGGCATCCTCTTCTGCAGT
CCCACCGATCTCTCCTATTAGAATAATACCTTCTGTCTGGGGATCAACTA
GGAACTTTTCAAGGCAATCAACAAAGTTTGTCCCATTAAAAGGATCCCCA
CCTATACCTACACAGGTTGATTGTCCAAGGCCAACTACAGTTGTTTGAAA
AACTGCTTCGTAGGTCAAGGTACCAGATCGAGAAACAATTCCAACCCGCC
CAGGTTTGTGAATATACCCAGGCATAATGCCAATCTTACATTCTCCAGGT
TTGATGATACCAGGGCAGTTGGGACCAATCAGCCGAGTTTTAGATTGCCT
GTTTAGAGCAGCTTTCACTCGCACCATATCGTGTTGAGGGATTCCTTCGG
TGATACAGACGACAAGATCCAACTCAGCCTCCATAGCCTCCATGATAGCA
GCAGCAGCAAATGGCG
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