CV884401

Overview
NameCV884401
Unique NameCV884401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884401_ssr847 microsatellite CV884401_ssr847:847..858. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3336 contig Csv1_Contig3336:455..1319. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCD_ECOLI (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli (strain K12) GN=sucD PE=1 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 8.723e-62
Identity = 126/216 (58.33%), Postives = 147/216 (68.06%), Query Frame = -3
Query:  217 PFXXXXXXXXXXXELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFK 864
            PF            + L++ ITEGIP  DM+ VK  L+ ++  R+IGPNCPG+I PGECKIGI PG+IHKPG+VGIVSRSGTLTYEAV QTT  G GQSTCVGIGGDP  G+NF+D LE F  DPQT              E+AAA IKE  T KPVV +IAG+TAP G+RMGHAGAI++GGKGTA +K   L  AGV  V S A IG A+  V K
Sbjct:   76 PFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 289          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCD_ECOL6 (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli O6 GN=sucD PE=3 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 8.723e-62
Identity = 126/216 (58.33%), Postives = 147/216 (68.06%), Query Frame = -3
Query:  217 PFXXXXXXXXXXXELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFK 864
            PF            + L++ ITEGIP  DM+ VK  L+ ++  R+IGPNCPG+I PGECKIGI PG+IHKPG+VGIVSRSGTLTYEAV QTT  G GQSTCVGIGGDP  G+NF+D LE F  DPQT              E+AAA IKE  T KPVV +IAG+TAP G+RMGHAGAI++GGKGTA +K   L  AGV  V S A IG A+  V K
Sbjct:   76 PFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 289          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCD_ECO57 (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli O157:H7 GN=sucD PE=3 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 8.723e-62
Identity = 126/216 (58.33%), Postives = 147/216 (68.06%), Query Frame = -3
Query:  217 PFXXXXXXXXXXXELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFK 864
            PF            + L++ ITEGIP  DM+ VK  L+ ++  R+IGPNCPG+I PGECKIGI PG+IHKPG+VGIVSRSGTLTYEAV QTT  G GQSTCVGIGGDP  G+NF+D LE F  DPQT              E+AAA IKE  T KPVV +IAG+TAP G+RMGHAGAI++GGKGTA +K   L  AGV  V S A IG A+  V K
Sbjct:   76 PFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVT-KPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 289          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCD_AQUAE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Aquifex aeolicus GN=sucD PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.223e-57
Identity = 115/217 (53.00%), Postives = 144/217 (66.36%), Query Frame = -3
Query:  217 PFXXXXXXXXXXXELDLVVCITEGIPQHDMVRVKA-ALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFK 864
            PF            ++LVVCITEGIP  DM+ VK   L      +L+GPNCPG+I PGE K+GIMPG+I K G++GIVSRSGTLTYEA +Q T  GLGQST VGIGGDP +G    D +E F  DP+T              E+AA  I E   +KPV A+IAG+TAPPG+RMGHAGAI+ GGKGTA+ K++ L +AG  V+E+PAKIG  + ++ K
Sbjct:   76 PFAADAIVEALDAGIELVVCITEGIPVKDMMMVKDYMLKNYPNAKLVGPNCPGVITPGEAKVGIMPGHIFKRGKIGIVSRSGTLTYEAAYQLTKYGLGQSTAVGIGGDPVHGLTHRDVIEMFNKDPETEAILMIGEIGGTEEEEAAEYI-EKEVDKPVFAYIAGITAPPGKRMGHAGAIIMGGKGTAKAKMEALEKAGAYVIENPAKIGETVAKILK 291          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCA3_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit alpha-3, mitochondrial OS=Trichomonas vaginalis GN=ALPHA-SCS3 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.220e-55
Identity = 115/208 (55.29%), Postives = 142/208 (68.27%), Query Frame = -3
Query:  208 LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKES--GTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRG 822
            + LVVCITE IPQHDM++VK  + +++  +LIGPNCPG+I+PG   K+GI+P  I   G++GIVSRSGTLTYEA + TT+ GLGQST VGIGGDPF G    D +++F  DPQT              EDAA  I ++    EKPVVAFIAG TAPPG+RMGHAGAIVSGGKGTA+ K K L  AGV +   P  +G  + E  K+ G
Sbjct:  101 MGLVVCITEHIPQHDMIKVKKVM-KETGCQLIGPNCPGLIQPGTHTKLGIIPTNIFNNGKIGIVSRSGTLTYEAAYATTLAGLGQSTVVGIGGDPFAGQLHTDVVKRFAADPQTEGIILIGEIGGTSEEDAAEWIAKTKLTQEKPVVAFIAGATAPPGKRMGHAGAIVSGGKGTAEGKYKALEAAGVRIARHPGNMGKFIFEEMKRMG 307          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCA2_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Trichomonas vaginalis GN=ALPHA-SCS2 PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.593e-55
Identity = 115/208 (55.29%), Postives = 142/208 (68.27%), Query Frame = -3
Query:  208 LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKES--GTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRG 822
            + LVVCITE IPQHDM++VK  + +++  +LIGPNCPG+I+PG   K+GI+P  I + G++GIVSRSGTLTYEA + TT  GLGQST VGIGGDPF G    D +++F  DPQT              EDAA  I ++    EKPVVAFIAG TAPPG+RMGHAGAIVSGGKGTA+ K K L  AGV +   P  +G  + E  K+ G
Sbjct:  101 MGLVVCITEHIPQHDMIKVKKVM-KETGCQLIGPNCPGLIQPGTHTKLGIIPTNIFRNGKIGIVSRSGTLTYEAAYATTQAGLGQSTVVGIGGDPFAGQLHTDVIKRFAADPQTEGIILIGEIGGTSEEDAAEWIAKTKLTQEKPVVAFIAGATAPPGKRMGHAGAIVSGGKGTAEGKYKALEAAGVRIARHPGNMGKFIFEEMKRLG 307          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCA1_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial OS=Trichomonas vaginalis GN=ALPHA-SCS1 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.033e-54
Identity = 114/208 (54.81%), Postives = 141/208 (67.79%), Query Frame = -3
Query:  208 LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKES--GTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQRG 822
            + LVVCITE IPQHDM++VK  + +++  +LIGPNCPG+I+PG   K+GI+P  I   G++GIVSRSGTLTYEA + TT+ GLGQST VGIGGDPF G    D +++F  DPQT              EDAA  I ++    EKPVVA IAG TAPPG+RMGHAGAIVSGGKGTA+ K K L  AGV +   P  +G  + E  K+ G
Sbjct:  101 MGLVVCITEHIPQHDMIKVKKVM-KETGCQLIGPNCPGLIQPGTHTKLGIIPTNIFNNGKIGIVSRSGTLTYEAAYATTLAGLGQSTVVGIGGDPFAGQLHTDVVKRFAADPQTEGIILIGEIGGTSEEDAAEWIAKTKLTQEKPVVASIAGATAPPGKRMGHAGAIVSGGKGTAEGKYKALEAAGVRIARHPGNMGKFIFEEMKRMG 307          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCD2_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit alpha 2 OS=Archaeoglobus fulgidus GN=sucD2 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.484e-49
Identity = 105/214 (49.07%), Postives = 132/214 (61.68%), Query Frame = -3
Query:  223 PFXXXXXXXXXXXELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEV 864
            PF            + ++VCITEGIP HD +++   +     T LIGPNCPGII PG+  +GIMP  I KPG VGIVSRSGTLTY+  +  T +GLGQST VGIGGD   GT+FV+ L  F  D +T              E AA  I+E    KPVV ++AGLTAPPG+RMGHAGAI+ GG GTA+ KIK L  AG  V ++P ++   + E+
Sbjct:   76 PFAADAVMEAADAGIKVIVCITEGIPVHDELKMYWRVKEAGAT-LIGPNCPGIISPGKTHLGIMPVQIFKPGNVGIVSRSGTLTYQIAYNLTKLGLGQSTVVGIGGDRIIGTDFVEVLRLFEDDKETKAVVLVGEIGGRDEEVAAEFIRE--MSKPVVGYVAGLTAPPGKRMGHAGAIIEGGVGTAESKIKALEAAGARVGKTPMEVAELVAEI 286          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: MTKB_METEA (Malate--CoA ligase subunit alpha OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=mtkB PE=3 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 6.484e-49
Identity = 103/217 (47.47%), Postives = 135/217 (62.21%), Query Frame = -3
Query:  223 PFXXXXXXXXXXXELDLVVCITEGIPQHDMVRVKAALNR---QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEV 864
            PF            L LV  IT+GIP  DM+RVK  L R   + +T ++GPNC GII PG+  +GIMPG+I+ PG+VG++SRSGTL YEA  Q   +G+G ST VGIGGDP NG++F+D L  F  DP+T               +A+A IKE+   KPV+ F+AGLTAP GRRMGHAGAI+S    +A +K + +R  G+TV   P   GS + +V
Sbjct:   76 PFAADAIMEAADAGLKLVCSITDGIPAQDMMRVKRYLRRYPKEKRTMVVGPNCAGIISPGKSMLGIMPGHIYLPGKVGVISRSGTLGYEAAAQMKELGIGISTSVGIGGDPINGSSFLDHLALFEQDPETEAVLMIGEIGGPQEAEASAWIKEN-FSKPVIGFVAGLTAPKGRRMGHAGAIISATGDSAAEKAEIMRSYGLTVAPDPGSFGSTVADV 291          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCD_METTH (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Methanobacterium thermoautotrophicum GN=sucD PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.203e-48
Identity = 106/193 (54.92%), Postives = 124/193 (64.25%), Query Frame = -3
Query:  244 LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 822
            LDLVV ITE IP HD +++    +R  KT +IGPN PGII PG  K+GIMP +I   G +GIVSRSGTLTYE   Q T  G GQSTCVGIGGDP  G  FVD LE+F  DP T              E AA+ I++    KPV AFI+G TAPPG+RMGHAGAI+ GG GTA  K + L  AG  VV+ P+ I
Sbjct:   93 LDLVVIITEHIPVHDSMQIMEYASRMGKT-VIGPNTPGIITPGIGKLGIMPTHIFTEGTIGIVSRSGTLTYEFAAQLTEAGFGQSTCVGIGGDPVTGLGFVDVLERFEDDPGTDAVVLIGEIGGDAEERAASYIEQ--MSKPVFAFISGATAPPGKRMGHAGAIIEGGTGTASSKREALEAAGAVVVDRPSAI 282          
The following BLAST results are available for this feature:
BLAST of CV884401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
SUCD_ECOLI8.723e-6258.33Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_ECOL68.723e-6258.33Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_ECO578.723e-6258.33Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_AQUAE2.223e-5753.00Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCA3_TRIVA1.220e-5555.29Succinyl-CoA ligase [GDP-forming] subunit alpha-3,... [more]
SUCA2_TRIVA1.593e-5555.29Succinyl-CoA ligase [GDP-forming] subunit alpha-2,... [more]
SUCA1_TRIVA1.033e-5454.81Succinyl-CoA ligase [GDP-forming] subunit alpha-1,... [more]
SUCD2_ARCFU6.484e-4949.07Succinyl-CoA ligase [ADP-forming] subunit alpha 2 ... [more]
MTKB_METEA6.484e-4947.47Malate--CoA ligase subunit alpha OS=Methylobacteri... [more]
SUCD_METTH4.203e-4854.92Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003B12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884401 ID=CV884401; Name=CV884401; organism=Citrus sinensis; type=EST; length=866bp
TTTTTTTTTTTTTTTGAAAAGCTTTATTAATTGTATAATCAATTCCCGTT
AGGTGCTGAATGGGGGGGAAAACTTTGAATTTCCAAGAACTCTACCAGAA
TCAAAATCAATTTCAAAATAAAAATGCTGAGAAGCACAATTTTTTGACAT
TGTGCAAAAAAGCTGTATAGAAATCTAGTGTTTCTTTTATCAAAACTAAC
TTGCCAGGCCACGTTGCTTGAAAACCTCAAGCATAGCAGAGCCAATTTTT
GCGGGAGACTCTACCACTGTCACTCCGGCTTCCCTGAGGGTCTTAATTTT
GTCTTGAGCCGTGCCCTTCCCACCAGAGACGATAGCTCCAGCATGACCCA
TACGGCGGCCAGGGGGAGCTGTTAGTCCAGCAATAAAAGCAACAACGGGC
TTCTCAGTCCCACTTTCCTTTATCAAGGCAGCGGCATCCTCTTCTGCAGT
CCCACCGATCTCTCCTATTAGAATAATACCTTCTGTCTGGGGATCAACTA
GGAACTTTTCAAGGCAATCAACAAAGTTTGTCCCATTAAAAGGATCCCCA
CCTATACCTACACAGGTTGATTGTCCAAGGCCAACTACAGTTGTTTGAAA
AACTGCTTCGTAGGTCAAGGTACCAGATCGAGAAACAATTCCAACCCGCC
CAGGTTTGTGAATATACCCAGGCATAATGCCAATCTTACATTCTCCAGGT
TTGATGATACCAGGGCAGTTGGGACCAATCAGCCGAGTTTTAGATTGCCT
GTTTAGAGCAGCTTTCACTCGCACCATATCGTGTTGAGGGATTCCTTCGG
TGATACAGACGACAAGATCCAACTCAGCCTCCATAGCCTCCATGATAGCA
GCAGCAGCAAATGGCG
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