CV884401

Overview
NameCV884401
Unique NameCV884401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884401_ssr847 microsatellite CV884401_ssr847:847..858. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3336 contig Csv1_Contig3336:455..1319. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCA_YEAST (Succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=LSC1 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.086e-47
Identity = 104/208 (50.00%), Postives = 130/208 (62.50%), Query Frame = -3
Query:  220 LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEK----PVVAFIAGLTA--PPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVF 822
            + L VCITEGIPQHDM+ +   L  Q KTRL+GPNCPGII P  + +IGI P  I + G++GI+SRSGTLTYEAV QTT   LGQS  +G+GGD F GT+F+D L+ FL D  T               +AA  +KE    +    PV +FIAG  A    G RMGH+GAIV G    A+ K + LR+ GV VVESP  +G A+L+ F
Sbjct:  118 IPLAVCITEGIPQHDMLYIAEMLQTQDKTRLVGPNCPGIINPATKVRIGIQPPKIFQAGKIGIISRSGTLTYEAVQQTTKTDLGQSLVIGMGGDAFPGTDFIDALKLFLEDETTEGIIMLGEIGGKAEIEAAQFLKEYNFSRSKPMPVASFIAGTVAGQMKGVRMGHSGAIVEGSGTDAESKKQALRDVGVAVVESPGYLGQALLDQF 325          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCD1_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit alpha 1 OS=Archaeoglobus fulgidus GN=sucD1 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.550e-45
Identity = 97/189 (51.32%), Postives = 121/189 (64.02%), Query Frame = -3
Query:  256 LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVES 822
            L LVVC+TEGIP +D + +   L R+ K+ L+GPNCPG+I PG  K+G++P      G +G+VSRSGTLTY+     T  G+GQST VGIGGDP  G  FVD L+ F  D +T              E AA  IK+    KPVVAFIAG TAPPG+RMGHAGAI+ G  GTA+ K+  LR+AG  V E+
Sbjct:   93 LRLVVCVTEGIPLYDEMLIHRKL-REVKSMLLGPNCPGVISPGRSKVGLLPDRSFTQGNLGVVSRSGTLTYQICENLTKAGIGQSTVVGIGGDPMPGLTFVDVLKMFEEDEETKAVLLVGEIGGTAEEKAAEFIKQ--MSKPVVAFIAGRTAPPGKRMGHAGAIIEGSTGTAEAKMAALRDAGARVAET 278          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCD_THETH (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Thermus thermophilus GN=sucD PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.071e-43
Identity = 97/189 (51.32%), Postives = 120/189 (63.49%), Query Frame = -3
Query:  256 LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVES 822
            + L+V ITEGIP  DMVR    +     +RLIG NCPGII   E KIGIMPG++ K GRVGI+SRSGTLTYEA    +  GLG +T VGIGGDP  GT F D L  F  DP+T              E+AAA +K+   +KPVV FI G +AP G+RMGHAGAI+ G  GT + K++   EAG+ V ++
Sbjct:   89 IPLIVLITEGIPTLDMVRAVEEIKALG-SRLIGGNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDH-MKKPVVGFIGGRSAPKGKRMGHAGAIIMGNVGTPESKLRAFAEAGIPVADT 275          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCD_MYCBO (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Mycobacterium bovis GN=sucD PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.186e-40
Identity = 95/201 (47.26%), Postives = 119/201 (59.20%), Query Frame = -3
Query:  223 LDLVVCITEGIPQHDMVRVKAA-LNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEV 822
            + L+V ITEGIP  D     A  L    KTR+IGPNCPGII PG+   GI P  I  PG +G+VS+SGTLTY+ +F+  +  LG ST +GIGGDP  GT  +D +E F  DP T              E AA  IK +   KPVV ++AG TAP G+ MGHAGAIVSG  GTA  K + L  AGV V ++P+   +   E+
Sbjct:  102 IPLLVVITEGIPVQDTAYAWAYNLEAGHKTRIIGPNCPGIISPGQSLAGITPANITGPGPIGLVSKSGTLTYQMMFE--LRDLGFSTAIGIGGDPVIGTTHIDAIEAFEKDPDTKLIVMIGEIGGDAEERAADFIK-TNVSKPVVGYVAGFTAPEGKTMGHAGAIVSGSSGTAAAKQEALEAAGVKVGKTPSATAALAREI 299          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCD_MYCTU (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Mycobacterium tuberculosis GN=sucD PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.385e-40
Identity = 95/201 (47.26%), Postives = 119/201 (59.20%), Query Frame = -3
Query:  223 LDLVVCITEGIPQHDMVRVKAA-LNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEV 822
            + L+V ITEGIP  D     A  L    KTR+IGPNCPGII PG+   GI P  I  PG +G+VS+SGTLTY+ +F+  +  LG ST +GIGGDP  GT  +D +E F  DP T              E AA  IK +   KPVV ++AG TAP G+ MGHAGAIVSG  GTA  K + L  AGV V ++P+   +   E+
Sbjct:  102 IPLLVVITEGIPVQDTAYAWAYNLEAGHKTRIIGPNCPGIISPGQSLAGITPANITGPGPIGLVSKSGTLTYQMMFE--LRDLGFSTAIGIGGDPVIGTTHIDAIEAFERDPDTKLIVMIGEIGGDAEERAADFIK-TNVSKPVVGYVAGFTAPEGKTMGHAGAIVSGSSGTAAAKQEALEAAGVKVGKTPSATAALAREI 299          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: SUCD_METJA (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Methanocaldococcus jannaschii GN=sucD PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.556e-37
Identity = 90/207 (43.48%), Postives = 117/207 (56.52%), Query Frame = -3
Query:  244 PFXXXXXXXXXXXELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKI 864
            PF            ++L+V ITE IP HD +            ++IGPN PGI  P   K+GI+P  + K G VG+VSRSGTLTYE   Q    G G STCVGIGGDP  G  + + L+ F  D +T              E+AA  I++   +KPV+ +IAG +AP G+RMGHAGAIV  GKGTA+ K+K L EAG  V ++ + I
Sbjct:   81 PFAKDAVFEAIDAGIELIVVITEHIPVHDTMEF-VNYAEDVGVKIIGPNTPGIASPKVGKLGIIPMEVLKEGSVGMVSRSGTLTYEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEIGGGAEEEAAKFIEK--MKKPVIGYIAGQSAPEGKRMGHAGAIVEKGKGTAESKMKALEEAGAYVAKNISDI 284          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: ACL1_SCHPO (Probable ATP-citrate synthase subunit 1 OS=Schizosaccharomyces pombe GN=SPBC1703.07 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.612e-15
Identity = 61/212 (28.77%), Postives = 100/212 (47.17%), Query Frame = -3
Query:  217 VVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIG--------IMPGYIHKPGRVGIVSRSGTLTYEA--VFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGR---RMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFK 813
            +  I EG+P+    R     +++    +IGP   G IKPG  KIG        I+   +++PG V  VS+SG ++ E   +   T  G+ +   + IGGD + GT F+D L +F  DP                      +K    +KP+VA+  G  +   +   + GHAG+  +    TA  K + +REAG+ V E+  K+ + + EV++
Sbjct:  114 IAIIAEGVPER-RAREILVTSKEKNVVIIGPATVGGIKPGCFKIGNTGGMMDNIVASKLYRPGSVAYVSKSGGMSNELNNIISHTTDGVYEG--IAIGGDRYPGTTFIDHLIRFEADPACKLMVLLGEVGGVEEYRVIEAVKNGTIKKPIVAWAIGTCSSMFKTEVQFGHAGSFANSELETAVAKNQAMREAGIYVPETFEKLPALLQEVYE 322          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: ACL1_SORMA (ATP-citrate synthase subunit 1 OS=Sordaria macrospora GN=ACL1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.365e-14
Identity = 62/211 (29.38%), Postives = 99/211 (46.92%), Query Frame = -3
Query:  220 VVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIG--------IMPGYIHKPGRVGIVSRSGTLTYEA--VFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGR---RMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVF 813
            +  I EG+P+    R  A + ++    +IGP   G IKPG  KIG        I+   +++ G VG VS+SG ++ E   +   T  G+ +   V IGGD + GT F+D L ++  DP                      +K+    KP+VA+  G  A   +   + GHAGA  +    TA  K K++REAG  V ++   + + + +V+
Sbjct:  154 IAIIAEGVPER-RAREIAYVAKKKGITIIGPATVGGIKPGCFKIGNTGGMMDNIVASKLYRKGSVGYVSKSGGMSNELNNIISQTTDGVYEG--VAIGGDRYPGTTFIDHLLRYQADPACKILVLLGEVGGVEEYKVIEAVKQGIITKPIVAWAIGTCASMFKTEVQFGHAGAFANSQLETAATKNKSMREAGFYVPDTFEDMPALLKQVY 361          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: ACL1_NEUCR (Probable ATP-citrate synthase subunit 1 OS=Neurospora crassa GN=B14D6.310 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.365e-14
Identity = 62/211 (29.38%), Postives = 99/211 (46.92%), Query Frame = -3
Query:  220 VVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIG--------IMPGYIHKPGRVGIVSRSGTLTYEA--VFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGR---RMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVF 813
            +  I EG+P+    R  A + ++    +IGP   G IKPG  KIG        I+   +++ G VG VS+SG ++ E   +   T  G+ +   V IGGD + GT F+D L ++  DP                      +K+    KP+VA+  G  A   +   + GHAGA  +    TA  K K++REAG  V ++   + + + +V+
Sbjct:  150 IAIIAEGVPER-RAREIAYVAKKKGITIIGPATVGGIKPGCFKIGNTGGMMDNIVASKLYRKGSVGYVSKSGGMSNELNNIISQTTDGVYEG--VAIGGDRYPGTTFIDHLLRYQADPDCKILVLLGEVGGVEEYKVIDAVKQGIITKPIVAWAIGTCASMFKTEVQFGHAGAFANSQLETAATKNKSMREAGFYVPDTFEDMPALLKQVY 357          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: ACLY_RAT (ATP-citrate synthase OS=Rattus norvegicus GN=Acly PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.390e-13
Identity = 65/212 (30.66%), Postives = 94/212 (44.34%), Query Frame = -3
Query:  217 VVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIG--------IMPGYIHKPGRVGIVSRSGTLTYEA--VFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGR---RMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFK 813
            +  I EGIP+  + R       Q    +IGP   G IKPG  KIG        I+   +++PG V  VSRSG ++ E   +   T  G+ +   V IGGD + G+ F+D + ++   P                      IKE    KPVV +  G  A       + GHAGA  +    TA  K + L+EAGV V  S  ++G  +  V++
Sbjct:  593 IAIIAEGIPEA-LTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEG--VAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKEGRLTKPVVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYE 801          
The following BLAST results are available for this feature:
BLAST of CV884401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
SUCA_YEAST2.086e-4750.00Succinyl-CoA ligase [ADP-forming] subunit alpha, m... [more]
SUCD1_ARCFU2.550e-4551.32Succinyl-CoA ligase [ADP-forming] subunit alpha 1 ... [more]
SUCD_THETH1.071e-4351.32Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_MYCBO7.186e-4047.26Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_MYCTU9.385e-4047.26Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_METJA2.556e-3743.48Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
ACL1_SCHPO1.612e-1528.77Probable ATP-citrate synthase subunit 1 OS=Schizos... [more]
ACL1_SORMA1.365e-1429.38ATP-citrate synthase subunit 1 OS=Sordaria macrosp... [more]
ACL1_NEUCR1.365e-1429.38Probable ATP-citrate synthase subunit 1 OS=Neurosp... [more]
ACLY_RAT4.390e-1330.66ATP-citrate synthase OS=Rattus norvegicus GN=Acly ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003B12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884401 ID=CV884401; Name=CV884401; organism=Citrus sinensis; type=EST; length=866bp
TTTTTTTTTTTTTTTGAAAAGCTTTATTAATTGTATAATCAATTCCCGTT
AGGTGCTGAATGGGGGGGAAAACTTTGAATTTCCAAGAACTCTACCAGAA
TCAAAATCAATTTCAAAATAAAAATGCTGAGAAGCACAATTTTTTGACAT
TGTGCAAAAAAGCTGTATAGAAATCTAGTGTTTCTTTTATCAAAACTAAC
TTGCCAGGCCACGTTGCTTGAAAACCTCAAGCATAGCAGAGCCAATTTTT
GCGGGAGACTCTACCACTGTCACTCCGGCTTCCCTGAGGGTCTTAATTTT
GTCTTGAGCCGTGCCCTTCCCACCAGAGACGATAGCTCCAGCATGACCCA
TACGGCGGCCAGGGGGAGCTGTTAGTCCAGCAATAAAAGCAACAACGGGC
TTCTCAGTCCCACTTTCCTTTATCAAGGCAGCGGCATCCTCTTCTGCAGT
CCCACCGATCTCTCCTATTAGAATAATACCTTCTGTCTGGGGATCAACTA
GGAACTTTTCAAGGCAATCAACAAAGTTTGTCCCATTAAAAGGATCCCCA
CCTATACCTACACAGGTTGATTGTCCAAGGCCAACTACAGTTGTTTGAAA
AACTGCTTCGTAGGTCAAGGTACCAGATCGAGAAACAATTCCAACCCGCC
CAGGTTTGTGAATATACCCAGGCATAATGCCAATCTTACATTCTCCAGGT
TTGATGATACCAGGGCAGTTGGGACCAATCAGCCGAGTTTTAGATTGCCT
GTTTAGAGCAGCTTTCACTCGCACCATATCGTGTTGAGGGATTCCTTCGG
TGATACAGACGACAAGATCCAACTCAGCCTCCATAGCCTCCATGATAGCA
GCAGCAGCAAATGGCG
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