CV884401

Overview
NameCV884401
Unique NameCV884401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884401_ssr847 microsatellite CV884401_ssr847:847..858. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3336 contig Csv1_Contig3336:455..1319. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: ACLY_MOUSE (ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.390e-13
Identity = 65/212 (30.66%), Postives = 94/212 (44.34%), Query Frame = -3
Query:  217 VVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIG--------IMPGYIHKPGRVGIVSRSGTLTYEA--VFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGR---RMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFK 813
            +  I EGIP+  + R       Q    +IGP   G IKPG  KIG        I+   +++PG V  VSRSG ++ E   +   T  G+ +   V IGGD + G+ F+D + ++   P                      IKE    KPVV +  G  A       + GHAGA  +    TA  K + L+EAGV V  S  ++G  +  V++
Sbjct:  584 IAIIAEGIPEA-LTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEG--VAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKEGRLTKPVVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYE 792          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: ACLY_HUMAN (ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 5.733e-13
Identity = 64/212 (30.19%), Postives = 94/212 (44.34%), Query Frame = -3
Query:  217 VVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIG--------IMPGYIHKPGRVGIVSRSGTLTYEA--VFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGR---RMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFK 813
            +  I EGIP+  + R       Q    +IGP   G IKPG  KIG        I+   +++PG V  VSRSG ++ E   +   T  G+ +   V IGGD + G+ F+D + ++   P                      IKE    KP+V +  G  A       + GHAGA  +    TA  K + L+EAGV V  S  ++G  +  V++
Sbjct:  594 IAIIAEGIPEA-LTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEG--VAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYE 802          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: ACLY_SHEEP (ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.668e-12
Identity = 63/212 (29.72%), Postives = 93/212 (43.87%), Query Frame = -3
Query:  217 VVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIG--------IMPGYIHKPGRVGIVSRSGTLTYEA--VFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGR---RMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFK 813
            +  I EGIP+  + R       Q    +IGP   G IKPG  KIG        I+   +++PG V  VSRSG ++ E   +   T  G+ +   V IGGD + G+ F+D + ++   P                      + E    KPVV +  G  A       + GHAGA  +    TA  K + L+EAGV V  S  ++G  +  V++
Sbjct:  594 IAIIAEGIPEA-LTRKLIKKAEQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEG--VAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGVTEGRITKPVVCWCIGTCAAMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYE 802          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: ACLY_DICDI (Probable ATP-citrate synthase OS=Dictyostelium discoideum GN=acly PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.853e-12
Identity = 59/200 (29.50%), Postives = 88/200 (44.00%), Query Frame = -3
Query:  256 LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIG--------IMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTA---PPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVES 822
            +  VV I EG+P+++   + +   +  K  +IGP   G I+ G  KIG        IM   +++ G VG VS+SG L+ E     +    G    + IGGD F G+   D   ++   P+                     +K+    KP+ A+++G  A   P   + GHAGA   G   +A  K K LREAG  V  S
Sbjct:  118 IQTVVIIAEGVPENEARSLISIAKKLGKV-IIGPATVGGIQAGCFKIGNTAGTIVYIMACKLYRSGSVGFVSKSGGLSNEMYNVLSRCTDGIYEGIAIGGDAFPGSTLTDHALRYEKLPEVQMIVILGELGGWDEYGIVEALKKGEITKPICAWVSGTVAKIFPTEVQFGHAGAKSGGETESADAKNKALREAGAVVPTS 316          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: ACLY_CAEEL (Probable ATP-citrate synthase OS=Caenorhabditis elegans GN=D1005.1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.412e-11
Identity = 57/214 (26.64%), Postives = 96/214 (44.86%), Query Frame = -3
Query:  214 LDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIG--------IMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTA---PPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFKQ 822
            + ++  I EG+P++   ++    + +  T L+GP   G IKPG  KIG        I+   +++PG V  VSRSG ++ E     +    G    + IGGD + G+ + D + ++  D +                    L+K+    KP+VA+  G  A       + GHAGA  +    TA  K   LR +G  V ES   +G+ + + + +
Sbjct:  591 IKVIAIIAEGVPENQTRKLLKIAHDRGVT-LVGPATVGGIKPGCFKIGNTGGMMDNILASKLYRPGSVAYVSRSGGMSNELNNIISQNTNGVYEGIAIGGDRYPGSTYTDHVIRYQNDDRVKMIVLLGEVGGVEEYKIVDLLKQKKVTKPLVAWCIGTCADHITSEVQFGHAGASANALGETAACKNAALRASGALVPESFDDLGNKIRQTYDE 803          
BLAST of CV884401 vs. ExPASy Swiss-Prot
Match: ACLY_BOVIN (ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.409e-11
Identity = 62/212 (29.25%), Postives = 92/212 (43.40%), Query Frame = -3
Query:  217 VVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIG--------IMPGYIHKPGRVGIVSRSGTLTYEA--VFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXEDAAALIKESGTEKPVVAFIAGLTAPPGR---RMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGSAMLEVFK 813
            +  I EGIP+  + R       Q    +IGP   G IKPG  KIG        I+   +++PG V  VSRSG ++ E   +   T  G+ +   V IGGD + G+ F+D + ++                          + E    KPVV +  G  A       + GHAGA  +    TA  K + L+EAGV V  S  ++G  +  V++
Sbjct:  584 IAIIAEGIPEA-LTRKLIKKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEG--VAIGGDRYPGSTFMDHVLRYQDTAGVKMIVVLGEIGGTEEYKICRGVTEGRITKPVVCWCIGTCAAMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYE 792          
The following BLAST results are available for this feature:
BLAST of CV884401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ACLY_MOUSE4.390e-1330.66ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 ... [more]
ACLY_HUMAN5.733e-1330.19ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 ... [more]
ACLY_SHEEP1.668e-1229.72ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV... [more]
ACLY_DICDI4.853e-1229.50Probable ATP-citrate synthase OS=Dictyostelium dis... [more]
ACLY_CAEEL1.412e-1126.64Probable ATP-citrate synthase OS=Caenorhabditis el... [more]
ACLY_BOVIN2.409e-1129.25ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003B12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884401 ID=CV884401; Name=CV884401; organism=Citrus sinensis; type=EST; length=866bp
TTTTTTTTTTTTTTTGAAAAGCTTTATTAATTGTATAATCAATTCCCGTT
AGGTGCTGAATGGGGGGGAAAACTTTGAATTTCCAAGAACTCTACCAGAA
TCAAAATCAATTTCAAAATAAAAATGCTGAGAAGCACAATTTTTTGACAT
TGTGCAAAAAAGCTGTATAGAAATCTAGTGTTTCTTTTATCAAAACTAAC
TTGCCAGGCCACGTTGCTTGAAAACCTCAAGCATAGCAGAGCCAATTTTT
GCGGGAGACTCTACCACTGTCACTCCGGCTTCCCTGAGGGTCTTAATTTT
GTCTTGAGCCGTGCCCTTCCCACCAGAGACGATAGCTCCAGCATGACCCA
TACGGCGGCCAGGGGGAGCTGTTAGTCCAGCAATAAAAGCAACAACGGGC
TTCTCAGTCCCACTTTCCTTTATCAAGGCAGCGGCATCCTCTTCTGCAGT
CCCACCGATCTCTCCTATTAGAATAATACCTTCTGTCTGGGGATCAACTA
GGAACTTTTCAAGGCAATCAACAAAGTTTGTCCCATTAAAAGGATCCCCA
CCTATACCTACACAGGTTGATTGTCCAAGGCCAACTACAGTTGTTTGAAA
AACTGCTTCGTAGGTCAAGGTACCAGATCGAGAAACAATTCCAACCCGCC
CAGGTTTGTGAATATACCCAGGCATAATGCCAATCTTACATTCTCCAGGT
TTGATGATACCAGGGCAGTTGGGACCAATCAGCCGAGTTTTAGATTGCCT
GTTTAGAGCAGCTTTCACTCGCACCATATCGTGTTGAGGGATTCCTTCGG
TGATACAGACGACAAGATCCAACTCAGCCTCCATAGCCTCCATGATAGCA
GCAGCAGCAAATGGCG
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