CV884400

Overview
NameCV884400
Unique NameCV884400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884400_ssr462 microsatellite CV884400_ssr462:462..473. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3336 contig Csv1_Contig3336:1..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_RICBR (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=sucD PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 9.187e-78
Identity = 143/201 (71.14%), Postives = 161/201 (80.10%), Query Frame = 1
Query:  235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            A+ V+K T+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGG  HL LP++N+V EAKA+T ANASVIYVPPPF            +++VVCITEGIP  DMVRVK AL   S+TRLIGPNCPGII P ECKIGIMPG+IH+ G +GIVSRSGTLTYEAV QTT VGLGQSTCVGIGGDP NGTNFVDC++ FL D +T
Sbjct:    2 AILVNKKTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGKTHLDLPIYNTVHEAKAKTGANASVIYVPPPFAADSILEAIDAGIEIVVCITEGIPVLDMVRVKRALVG-SRTRLIGPNCPGIITPDECKIGIMPGHIHRKGSIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPVNGTNFVDCIDMFLQDDET 201          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_RICFE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia felis GN=sucD PE=3 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 7.778e-77
Identity = 142/201 (70.65%), Postives = 160/201 (79.60%), Query Frame = 1
Query:  235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+N+V EAKA+T ANASVIYVPP F            +++VVCITEGIP  DMV+VK AL   SKTRLIGPNCPG+I PGECKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT VGLGQSTCVGIGGDP NGTNFVDC++ FL D +T
Sbjct:    2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLDLPVYNTVHEAKAKTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMVKVKRALVG-SKTRLIGPNCPGVITPGECKIGIMPGHIHKRGTIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPVNGTNFVDCIDMFLKDDET 201          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_RICCN (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia conorii GN=sucD PE=3 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 1.016e-76
Identity = 142/201 (70.65%), Postives = 160/201 (79.60%), Query Frame = 1
Query:  235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+N+V EAKA+T ANASVIYVPP F            +++VVCITEGIP  DMV+VK AL   SKTRLIGPNCPG+I PGECKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT VGLGQSTC+GIGGDP NGTNFVDC+E FL D +T
Sbjct:    2 AILINKKTQVICQGFTGLQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLDLPVYNTVHEAKAKTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMVKVKRALVG-SKTRLIGPNCPGVITPGECKIGIMPGHIHKRGTIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGGDPVNGTNFVDCIEMFLKDDET 201          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_RICTY (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia typhi GN=sucD PE=3 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 3.860e-76
Identity = 140/201 (69.65%), Postives = 160/201 (79.60%), Query Frame = 1
Query:  235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+N+V EAKA+T ANASVIYVPP F            +++VVCITEGIP  DMV+VK AL   SKTRLIGPNCPG+I PGECKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT VGLGQSTC+GIGGDP NGT+FV+C+E FL D +T
Sbjct:    2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLNLPVYNTVHEAKAKTDANASVIYVPPGFAADSILEAIDAKIEVVVCITEGIPVLDMVKVKRALIG-SKTRLIGPNCPGVITPGECKIGIMPGHIHKTGIIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGGDPVNGTSFVECIEMFLQDDET 201          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_RICPR (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia prowazekii GN=sucD PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 6.584e-76
Identity = 140/201 (69.65%), Postives = 159/201 (79.10%), Query Frame = 1
Query:  235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            A+ ++K T+VICQG TG  GTFH+EQAI YGT MVGGVTP KGG  HL LPV+N+V EAKA+T ANASVIYVPP F            +++VVCITEGIP  DM++VK AL   SKTRLIGPNCPG+I PGECKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT  GLGQSTCVGIGGDP NGT+FVDC+E FL D +T
Sbjct:    2 AILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLNLPVYNTVHEAKAKTGANASVIYVPPGFAADSILEAIDAKIEVVVCITEGIPVLDMIKVKRALIG-SKTRLIGPNCPGVITPGECKIGIMPGHIHKIGDIGIVSRSGTLTYEAVAQTTAAGLGQSTCVGIGGDPVNGTSFVDCIEMFLQDDET 201          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_ECOLI (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli (strain K12) GN=sucD PE=1 SV=2)

HSP 1 Score: 275.404 bits (703), Expect = 3.058e-73
Identity = 135/201 (67.16%), Postives = 154/201 (76.62%), Query Frame = 1
Query:  235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            ++ +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA A T A ASVIYVP PF            + L++ ITEGIP  DM+ VK  L+ ++  R+IGPNCPG+I PGECKIGI PG+IHKPG+VGIVSRSGTLTYEAV QTT  G GQSTCVGIGGDP  G+NF+D LE F  DPQT
Sbjct:    2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQT 201          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_ECOL6 (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli O6 GN=sucD PE=3 SV=2)

HSP 1 Score: 275.404 bits (703), Expect = 3.058e-73
Identity = 135/201 (67.16%), Postives = 154/201 (76.62%), Query Frame = 1
Query:  235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            ++ +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA A T A ASVIYVP PF            + L++ ITEGIP  DM+ VK  L+ ++  R+IGPNCPG+I PGECKIGI PG+IHKPG+VGIVSRSGTLTYEAV QTT  G GQSTCVGIGGDP  G+NF+D LE F  DPQT
Sbjct:    2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQT 201          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_ECO57 (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Escherichia coli O157:H7 GN=sucD PE=3 SV=2)

HSP 1 Score: 275.404 bits (703), Expect = 3.058e-73
Identity = 135/201 (67.16%), Postives = 154/201 (76.62%), Query Frame = 1
Query:  235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            ++ +DKNT+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA A T A ASVIYVP PF            + L++ ITEGIP  DM+ VK  L+ ++  R+IGPNCPG+I PGECKIGI PG+IHKPG+VGIVSRSGTLTYEAV QTT  G GQSTCVGIGGDP  G+NF+D LE F  DPQT
Sbjct:    2 SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLD-EAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQT 201          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_COXBU (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Coxiella burnetii GN=sucD PE=3 SV=2)

HSP 1 Score: 275.404 bits (703), Expect = 3.058e-73
Identity = 133/201 (66.17%), Postives = 155/201 (77.11%), Query Frame = 1
Query:  235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            ++ +DK TRV+CQG TGK GTFH+EQAIEYGT+MVGGVTP KGG  HLGLP+FNSV EA  ET A+A++I+VP PF            + LVVCITEGIP  DM+ VKA L +    R+IGPNCPG+I PGECKIGIMPG+IH+ G+VGIVSRSGTLTYEAV QTT +G GQSTCVGIGGDP  GT+F+D LE F  D QT
Sbjct:    2 SILIDKETRVLCQGFTGKQGTFHSEQAIEYGTQMVGGVTPGKGGQSHLGLPIFNSVHEAVEETSADATMIFVPAPFCKDSIIEAVDAGVRLVVCITEGIPVLDMLEVKAYLRQHPDVRMIGPNCPGVITPGECKIGIMPGHIHQRGKVGIVSRSGTLTYEAVNQTTQMGFGQSTCVGIGGDPIPGTSFIDVLEMFEKDSQT 202          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCA_CAEEL (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=C05G5.4 PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 6.813e-73
Identity = 132/198 (66.67%), Postives = 155/198 (78.28%), Query Frame = 1
Query:  244 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            ++K+T+VI QG TGK GTFH +Q +EY TK+VGGV   K GTEHLGLPVF +V+EA+ +T A+ASVIYVP               + LVVCITEGIPQHDMVRVK+ L +Q+KTRL+GPNCPGII   +CKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT VG GQ+ CVGIGGDPFNGTNF+DCL  FL DP+T
Sbjct:   30 INKDTKVIVQGFTGKQGTFHGKQMLEYNTKVVGGVNANKAGTEHLGLPVFKNVSEARNKTGADASVIYVPASAAGSAIEEAMDAEIPLVVCITEGIPQHDMVRVKSRLLKQNKTRLVGPNCPGIISADQCKIGIMPGHIHKRGCIGIVSRSGTLTYEAVHQTTQVGFGQTLCVGIGGDPFNGTNFIDCLNVFLEDPET 227          
The following BLAST results are available for this feature:
BLAST of CV884400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SUCD_RICBR9.187e-7871.14Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICFE7.778e-7770.65Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICCN1.016e-7670.65Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICTY3.860e-7669.65Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_RICPR6.584e-7669.65Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_ECOLI3.058e-7367.16Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_ECOL63.058e-7367.16Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_ECO573.058e-7367.16Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_COXBU3.058e-7366.17Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCA_CAEEL6.813e-7366.67Probable succinyl-CoA ligase [GDP-forming] subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003B12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884400 ID=CV884400; Name=CV884400; organism=Citrus sinensis; type=EST; length=896bp
CTTCAATATATTTTGGGAAAAAAGAGAGAGACGAACTCGAGGGAGAAAAT
CAGCGAATCAGATTAAAGTGAAGTGAATCAAATGGCTCGCCAAGCCTTGG
CCAAGCTGATCGGCTCGATCGGATGTCGCAGACCCTCTACTGCTTCTTCC
GTTTCACATTACAGATTATCAACGTCGGCGGCGCCGGCGGCCCACTCTCG
ATATTATGGGTCGTCGGCGGCGGCGTCTCAGCCGGCAGTTTTCGTCGACA
AAAACACTCGAGTTATATGCCAAGGCATCACCGGAAAAAACGGCACGTTC
CATACCGAACAAGCCATCGAATACGGCACCAAAATGGTGGGTGGCGTGAC
GCCGAAGAAGGGTGGGACTGAGCACTTGGGACTTCCTGTATTCAACTCGG
TTGCTGAAGCTAAGGCTGAAACGAAGGCTAATGCTTCTGTCATTTATGTT
CCTCCGCCATTTGCTGCTGCTGCTATCATGGAGGCTATGGAGGCTGAGTT
GGATCTTGTCGTCTGTATCACCGAAGGAATCCCTCAACACGATATGGTGC
GAGTGAAAGCTGCTCTAAACAGGCAATCTAAAACTCGGCTGATTGGTCCC
AACTGCCCTGGTATCATCAAACCTGGAGAATGTAAGATTGGCATTATGCC
TGGGTATATTCACAAACCTGGGCGGGTTGGAATTGTTTCTCGATCTGGTA
CCTTGACCTACGAAGCAGTTTTTCAAACAACTGTAGTTGGCCTTGGACAA
TCAACCTGTGTAGGTATAGGTGGGGATCCTTTTAATGGGACAAACTTTGT
TGATTGCCTTGAAAAGTTCCTAGTTGATCCCCAGACAGAAGGTATTATTC
TAATAGGAGAGATCGGTGGGACTGCAGAAGAGGATGCCGCTGCCTT
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