CV884400

Overview
NameCV884400
Unique NameCV884400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884400_ssr462 microsatellite CV884400_ssr462:462..473. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3336 contig Csv1_Contig3336:1..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCA_NEUCR (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Neurospora crassa GN=8D4.130 PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.863e-71
Identity = 133/216 (61.57%), Postives = 159/216 (73.61%), Query Frame = 1
Query:  199 RYYGSSA---AASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            R Y S++   AA+   + ++ +T+V+ QG TGK GTFH +QAIEYGT +VGG  PKK G  HL  PVF++V+EA  ET A A+ I+VPPP             + L VCITEGIPQHDMVR+ + L  QSKTRL+GPNCPGII PG+CKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT  GLGQS  VGIGGDPF+GTNF+DCL+ FL D  T
Sbjct:   21 RAYSSNSSPYAATINNLKINGDTKVLFQGFTGKQGTFHAQQAIEYGTNVVGGTNPKKAGQTHLDRPVFSNVSEAVKETGATATAIFVPPPLAAAGIEEALQAEIPLAVCITEGIPQHDMVRITSMLKTQSKTRLVGPNCPGIIAPGQCKIGIMPGFIHKRGRIGIVSRSGTLTYEAVNQTTQAGLGQSLVVGIGGDPFSGTNFIDCLKVFLEDGDT 236          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_PSEAE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Pseudomonas aeruginosa GN=sucD PE=3 SV=2)

HSP 1 Score: 268.085 bits (684), Expect = 4.883e-71
Identity = 133/201 (66.17%), Postives = 150/201 (74.63%), Query Frame = 1
Query:  235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            +V ++K+T+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA   T A ASVIYVP PF            + L+VCITEGIP  DM+  K   +     RLIGPNCPG+I PGECKIGIMPG+IH PG+VGIVSRSGTLTYEAV QTT  G GQSTCVGIGGDP  G+NF+D L+ F  DPQT
Sbjct:    2 SVLINKDTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVKEAVEATGAEASVIYVPAPFCKDSILEAAFGGIKLIVCITEGIPTLDMLDAKVKCDELG-VRLIGPNCPGVITPGECKIGIMPGHIHLPGKVGIVSRSGTLTYEAVKQTTDAGFGQSTCVGIGGDPIPGSNFIDILKLFQEDPQT 201          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCA_SCHPO (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC16E8.17c PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.423e-70
Identity = 125/202 (61.88%), Postives = 151/202 (74.75%), Query Frame = 1
Query:  232 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            P + ++ +T+VI QG TGK GTFH + A++YGTK+VGG  PKK GT HLG PVF ++ EA  ETKA+AS ++VPPP             + L+V ITEGIPQHDM+RV   L  QSK+RL+GPNCPGII+PG+CKIGIMP +IHKPG +GIVSRSGTLTYEAV QTT   LGQS  +GIGGDPF GTNF+D L+ FL DP T
Sbjct:   33 PNLMINSDTKVIFQGFTGKQGTFHAQHAMDYGTKVVGGTNPKKAGTTHLGKPVFGTIEEAMKETKADASAVFVPPPLAAGAIEEAIAAEVPLIVAITEGIPQHDMLRVSDILKTQSKSRLVGPNCPGIIRPGQCKIGIMPSHIHKPGCIGIVSRSGTLTYEAVNQTTQTDLGQSLVIGIGGDPFPGTNFIDALKLFLDDPNT 234          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_BACSU (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Bacillus subtilis GN=sucD PE=1 SV=3)

HSP 1 Score: 261.922 bits (668), Expect = 3.499e-69
Identity = 132/201 (65.67%), Postives = 151/201 (75.12%), Query Frame = 1
Query:  235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            +VF++K+TRVI QGITG    FHT+Q +EYGT +VGGVTP KGGTE  G+PVFN+VAEA   T ANASVIYVP PF            LDLV+CITE IP  DMV+VK  +  + KTRLIGPNCPG+I P ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q +  G+GQST VGIGGDP NGTNF+D L+ F  DP T
Sbjct:    2 SVFINKDTRVIVQGITGSTALFHTKQMLEYGTNIVGGVTPGKGGTEAEGVPVFNTVAEAVQTTGANASVIYVPAPFAADAIMEAVDAELDLVICITEHIPVLDMVKVKRFMEGK-KTRLIGPNCPGVITPEECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLSEAGVGQSTAVGIGGDPVNGTNFIDVLKAFNEDPDT 201          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_HAEIN (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Haemophilus influenzae GN=sucD PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 1.018e-68
Identity = 126/201 (62.69%), Postives = 151/201 (75.12%), Query Frame = 1
Query:  235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            A+ +DKNT+VICQG TG  GTFH+EQA+ YGT++VGGV+P KGGT HLGLPVFN+V EA   T   A+VIYVP  F            + L+VCITEGIP  DM++VK  LN ++   +IGPNCPG+I P ECKIGIMP +IHK G+VGIVSRSGTLTYEAV QTT  G GQSTCVGIGGDP  G++F+D LE+F  DP+T
Sbjct:    2 AILIDKNTKVICQGFTGGQGTFHSEQALAYGTQLVGGVSPNKGGTTHLGLPVFNTVREAVENTGVTATVIYVPASFCKDAIIEAIDAGIQLIVCITEGIPTLDMLKVKQKLN-ETGVVMIGPNCPGVITPDECKIGIMPAHIHKKGKVGIVSRSGTLTYEAVKQTTDEGFGQSTCVGIGGDPIPGSSFIDILERFQQDPET 201          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_STAAW (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain MW2) GN=sucD PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.376e-65
Identity = 125/201 (62.19%), Postives = 147/201 (73.13%), Query Frame = 1
Query:  235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            +VF+DKNT+V+ QGITG    FHT+Q ++YGTK+V GVTP KGG    G+PVFN+V EAK ET A  SVIYVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+T VGIGGDP NGTNF+D L+ F  D +T
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDDET 201          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_STAAS (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain MSSA476) GN=sucD PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.376e-65
Identity = 125/201 (62.19%), Postives = 147/201 (73.13%), Query Frame = 1
Query:  235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            +VF+DKNT+V+ QGITG    FHT+Q ++YGTK+V GVTP KGG    G+PVFN+V EAK ET A  SVIYVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+T VGIGGDP NGTNF+D L+ F  D +T
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDDET 201          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_STAAR (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain MRSA252) GN=sucD PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.376e-65
Identity = 125/201 (62.19%), Postives = 147/201 (73.13%), Query Frame = 1
Query:  235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            +VF+DKNT+V+ QGITG    FHT+Q ++YGTK+V GVTP KGG    G+PVFN+V EAK ET A  SVIYVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+T VGIGGDP NGTNF+D L+ F  D +T
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDDET 201          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_STAAN (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain N315) GN=sucD PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.376e-65
Identity = 125/201 (62.19%), Postives = 147/201 (73.13%), Query Frame = 1
Query:  235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            +VF+DKNT+V+ QGITG    FHT+Q ++YGTK+V GVTP KGG    G+PVFN+V EAK ET A  SVIYVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+T VGIGGDP NGTNF+D L+ F  D +T
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDDET 201          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_STAAM (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sucD PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.376e-65
Identity = 125/201 (62.19%), Postives = 147/201 (73.13%), Query Frame = 1
Query:  235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            +VF+DKNT+V+ QGITG    FHT+Q ++YGTK+V GVTP KGG    G+PVFN+V EAK ET A  SVIYVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+T VGIGGDP NGTNF+D L+ F  D +T
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDDET 201          
The following BLAST results are available for this feature:
BLAST of CV884400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SUCA_NEUCR2.863e-7161.57Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCD_PSEAE4.883e-7166.17Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCA_SCHPO2.423e-7061.88Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCD_BACSU3.499e-6965.67Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_HAEIN1.018e-6862.69Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAW1.376e-6562.19Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAS1.376e-6562.19Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAR1.376e-6562.19Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAN1.376e-6562.19Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAM1.376e-6562.19Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003B12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884400 ID=CV884400; Name=CV884400; organism=Citrus sinensis; type=EST; length=896bp
CTTCAATATATTTTGGGAAAAAAGAGAGAGACGAACTCGAGGGAGAAAAT
CAGCGAATCAGATTAAAGTGAAGTGAATCAAATGGCTCGCCAAGCCTTGG
CCAAGCTGATCGGCTCGATCGGATGTCGCAGACCCTCTACTGCTTCTTCC
GTTTCACATTACAGATTATCAACGTCGGCGGCGCCGGCGGCCCACTCTCG
ATATTATGGGTCGTCGGCGGCGGCGTCTCAGCCGGCAGTTTTCGTCGACA
AAAACACTCGAGTTATATGCCAAGGCATCACCGGAAAAAACGGCACGTTC
CATACCGAACAAGCCATCGAATACGGCACCAAAATGGTGGGTGGCGTGAC
GCCGAAGAAGGGTGGGACTGAGCACTTGGGACTTCCTGTATTCAACTCGG
TTGCTGAAGCTAAGGCTGAAACGAAGGCTAATGCTTCTGTCATTTATGTT
CCTCCGCCATTTGCTGCTGCTGCTATCATGGAGGCTATGGAGGCTGAGTT
GGATCTTGTCGTCTGTATCACCGAAGGAATCCCTCAACACGATATGGTGC
GAGTGAAAGCTGCTCTAAACAGGCAATCTAAAACTCGGCTGATTGGTCCC
AACTGCCCTGGTATCATCAAACCTGGAGAATGTAAGATTGGCATTATGCC
TGGGTATATTCACAAACCTGGGCGGGTTGGAATTGTTTCTCGATCTGGTA
CCTTGACCTACGAAGCAGTTTTTCAAACAACTGTAGTTGGCCTTGGACAA
TCAACCTGTGTAGGTATAGGTGGGGATCCTTTTAATGGGACAAACTTTGT
TGATTGCCTTGAAAAGTTCCTAGTTGATCCCCAGACAGAAGGTATTATTC
TAATAGGAGAGATCGGTGGGACTGCAGAAGAGGATGCCGCTGCCTT
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