CV884400

Overview
NameCV884400
Unique NameCV884400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884400_ssr462 microsatellite CV884400_ssr462:462..473. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3336 contig Csv1_Contig3336:1..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_STAAC (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain COL) GN=sucD PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.376e-65
Identity = 125/201 (62.19%), Postives = 147/201 (73.13%), Query Frame = 1
Query:  235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            +VF+DKNT+V+ QGITG    FHT+Q ++YGTK+V GVTP KGG    G+PVFN+V EAK ET A  SVIYVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+T VGIGGDP NGTNF+D L+ F  D +T
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDDET 201          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_STAES (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sucD PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 2.347e-65
Identity = 123/201 (61.19%), Postives = 148/201 (73.63%), Query Frame = 1
Query:  235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            +VF+DKNT+V+ QGITG    FHT+Q ++YGT++V GVTP KGG    G+PV+N+V EAK ET AN SV+YVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+T VGIGGDP NGTNF+D L+ F  D +T
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAKNETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDSET 201          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_STAEQ (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sucD PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 2.347e-65
Identity = 123/201 (61.19%), Postives = 148/201 (73.63%), Query Frame = 1
Query:  235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            +VF+DKNT+V+ QGITG    FHT+Q ++YGT++V GVTP KGG    G+PV+N+V EAK ET AN SV+YVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T  G+GQ+T VGIGGDP NGTNF+D L+ F  D +T
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAKNETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDSET 201          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_AQUAE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Aquifex aeolicus GN=sucD PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 1.021e-60
Identity = 116/202 (57.43%), Postives = 143/202 (70.79%), Query Frame = 1
Query:  235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVK-AALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            A+ V+K+T+V+ QGITGK G+FH +Q  EYGT++V GVTP KGG E  G+PVFN+V EA  ET AN S+I+VP PF            ++LVVCITEGIP  DM+ VK   L      +L+GPNCPG+I PGE K+GIMPG+I K G++GIVSRSGTLTYEA +Q T  GLGQST VGIGGDP +G    D +E F  DP+T
Sbjct:    2 AILVNKDTKVVVQGITGKEGSFHAKQCKEYGTQVVAGVTPGKGGMEVEGIPVFNTVKEAVKETGANCSLIFVPAPFAADAIVEALDAGIELVVCITEGIPVKDMMMVKDYMLKNYPNAKLVGPNCPGVITPGEAKVGIMPGHIFKRGKIGIVSRSGTLTYEAAYQLTKYGLGQSTAVGIGGDPVHGLTHRDVIEMFNKDPET 203          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD2_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit alpha 2 OS=Archaeoglobus fulgidus GN=sucD2 PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.992e-56
Identity = 112/201 (55.72%), Postives = 138/201 (68.66%), Query Frame = 1
Query:  235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            A+ VD+ T+V+ QGITG  G FHTE+ + YGTK+V GVTP KGGTE LG+PV++SV EA  E  ANASVI+VP PF            + ++VCITEGIP HD +++   +     T LIGPNCPGII PG+  +GIMP  I KPG VGIVSRSGTLTY+  +  T +GLGQST VGIGGD   GT+FV+ L  F  D +T
Sbjct:    2 AIIVDERTKVVVQGITGYQGKFHTERMLNYGTKIVAGVTPGKGGTEVLGVPVYDSVKEAVREADANASVIFVPAPFAADAVMEAADAGIKVIVCITEGIPVHDELKMYWRVKEAGAT-LIGPNCPGIISPGKTHLGIMPVQIFKPGNVGIVSRSGTLTYQIAYNLTKLGLGQSTVVGIGGDRIIGTDFVEVLRLFEDDKET 201          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCA_YEAST (Succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=LSC1 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.601e-56
Identity = 111/201 (55.22%), Postives = 134/201 (66.67%), Query Frame = 1
Query:  238 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            + + K+T+VI QG TGK GTFH   + EYGT +VGG  PKK G  HLG PVF SV +A  ET A AS I+VPPP             + L VCITEGIPQHDM+ +   L  Q KTRL+GPNCPGII P  + +IGI P  I + G++GI+SRSGTLTYEAV QTT   LGQS  +G+GGD F GT+F+D L+ FL D  T
Sbjct:   31 LLLPKDTKVIFQGFTGKQGTFHASISQEYGTNVVGGTNPKKAGQTHLGQPVFASVKDAIKETGATASAIFVPPPIAAAAIKESIEAEIPLAVCITEGIPQHDMLYIAEMLQTQDKTRLVGPNCPGIINPATKVRIGIQPPKIFQAGKIGIISRSGTLTYEAVQQTTKTDLGQSLVIGMGGDAFPGTDFIDALKLFLEDETT 231          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_METTH (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Methanobacterium thermoautotrophicum GN=sucD PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.368e-55
Identity = 112/200 (56.00%), Postives = 134/200 (67.00%), Query Frame = 1
Query:  238 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            + +D++TR + QGITGK G+FHT Q +EYGT++V GVTP KGG E LG+ V+NSV E   E   NAS+I+VP PF            LDLVV ITE IP HD +++    +R  KT +IGPN PGII PG  K+GIMP +I   G +GIVSRSGTLTYE   Q T  G GQSTCVGIGGDP  G  FVD LE+F  DP T
Sbjct:    7 ILLDEDTRCLVQGITGKQGSFHTRQMLEYGTRIVAGVTPGKGGQEFLGVDVYNSVEEVTEEMDVNASIIFVPAPFAKDAAFESIKH-LDLVVIITEHIPVHDSMQIMEYASRMGKT-VIGPNTPGIITPGIGKLGIMPTHIFTEGTIGIVSRSGTLTYEFAAQLTEAGFGQSTCVGIGGDPVTGLGFVDVLERFEDDPGT 204          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: MTKB_METEA (Malate--CoA ligase subunit alpha OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=mtkB PE=3 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.864e-54
Identity = 104/204 (50.98%), Postives = 137/204 (67.16%), Query Frame = 1
Query:  235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNR---QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            ++ +D+ T ++ QGITG  GTFH ++ I YG+ +VGGVTP KGG  H G+PVFN+V EA   T A  S+ +V PPF            L LV  IT+GIP  DM+RVK  L R   + +T ++GPNC GII PG+  +GIMPG+I+ PG+VG++SRSGTL YEA  Q   +G+G ST VGIGGDP NG++F+D L  F  DP+T
Sbjct:    2 SILIDEKTPILVQGITGDKGTFHAKEMIAYGSNVVGGVTPGKGGKTHCGVPVFNTVKEAVEATGATTSITFVAPPFAADAIMEAADAGLKLVCSITDGIPAQDMMRVKRYLRRYPKEKRTMVVGPNCAGIISPGKSMLGIMPGHIYLPGKVGVISRSGTLGYEAAAQMKELGIGISTSVGIGGDPINGSSFLDHLALFEQDPET 205          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCA2_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Trichomonas vaginalis GN=ALPHA-SCS2 PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 7.084e-54
Identity = 108/204 (52.94%), Postives = 139/204 (68.14%), Query Frame = 1
Query:  229 QPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            QP +F+DK+TRV+ QGI G  G +H+    EYGTK+VG V PKK G    GLP+F ++ E    T ANAS+I+VP P             + LVVCITE IPQHDM++VK  + +++  +LIGPNCPG+I+PG   K+GI+P  I + G++GIVSRSGTLTYEA + TT  GLGQST VGIGGDPF G    D +++F  DPQT
Sbjct:   12 QPLLFIDKDTRVVIQGI-GNQGQYHSRLMREYGTKVVGAVHPKKAGKIIAGLPIFKNMKEVVKRTDANASLIFVPAPGAAAACIEAAEAGMGLVVCITEHIPQHDMIKVKKVM-KETGCQLIGPNCPGLIQPGTHTKLGIIPTNIFRNGKIGIVSRSGTLTYEAAYATTQAGLGQSTVVGIGGDPFAGQLHTDVIKRFAADPQT 213          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCA3_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit alpha-3, mitochondrial OS=Trichomonas vaginalis GN=ALPHA-SCS3 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 9.251e-54
Identity = 107/204 (52.45%), Postives = 140/204 (68.63%), Query Frame = 1
Query:  229 QPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            QP +F+DK+T+V+ QGI G  G FH+    +YGTK+VG V PKK G+   GLP+F ++ E    T ANAS+I+VP P             + LVVCITE IPQHDM++VK  + +++  +LIGPNCPG+I+PG   K+GI+P  I   G++GIVSRSGTLTYEA + TT+ GLGQST VGIGGDPF G    D +++F  DPQT
Sbjct:   12 QPLLFIDKDTKVVIQGI-GNQGQFHSRLMRQYGTKVVGAVHPKKAGSIIAGLPIFKNMKEVVKRTDANASLIFVPAPGAAAACIEAAQAGMGLVVCITEHIPQHDMIKVKKVM-KETGCQLIGPNCPGLIQPGTHTKLGIIPTNIFNNGKIGIVSRSGTLTYEAAYATTLAGLGQSTVVGIGGDPFAGQLHTDVVKRFAADPQT 213          
The following BLAST results are available for this feature:
BLAST of CV884400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SUCD_STAAC1.376e-6562.19Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAES2.347e-6561.19Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAEQ2.347e-6561.19Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_AQUAE1.021e-6057.43Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD2_ARCFU1.992e-5655.72Succinyl-CoA ligase [ADP-forming] subunit alpha 2 ... [more]
SUCA_YEAST2.601e-5655.22Succinyl-CoA ligase [ADP-forming] subunit alpha, m... [more]
SUCD_METTH8.368e-5556.00Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
MTKB_METEA1.864e-5450.98Malate--CoA ligase subunit alpha OS=Methylobacteri... [more]
SUCA2_TRIVA7.084e-5452.94Succinyl-CoA ligase [GDP-forming] subunit alpha-2,... [more]
SUCA3_TRIVA9.251e-5452.45Succinyl-CoA ligase [GDP-forming] subunit alpha-3,... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003B12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884400 ID=CV884400; Name=CV884400; organism=Citrus sinensis; type=EST; length=896bp
CTTCAATATATTTTGGGAAAAAAGAGAGAGACGAACTCGAGGGAGAAAAT
CAGCGAATCAGATTAAAGTGAAGTGAATCAAATGGCTCGCCAAGCCTTGG
CCAAGCTGATCGGCTCGATCGGATGTCGCAGACCCTCTACTGCTTCTTCC
GTTTCACATTACAGATTATCAACGTCGGCGGCGCCGGCGGCCCACTCTCG
ATATTATGGGTCGTCGGCGGCGGCGTCTCAGCCGGCAGTTTTCGTCGACA
AAAACACTCGAGTTATATGCCAAGGCATCACCGGAAAAAACGGCACGTTC
CATACCGAACAAGCCATCGAATACGGCACCAAAATGGTGGGTGGCGTGAC
GCCGAAGAAGGGTGGGACTGAGCACTTGGGACTTCCTGTATTCAACTCGG
TTGCTGAAGCTAAGGCTGAAACGAAGGCTAATGCTTCTGTCATTTATGTT
CCTCCGCCATTTGCTGCTGCTGCTATCATGGAGGCTATGGAGGCTGAGTT
GGATCTTGTCGTCTGTATCACCGAAGGAATCCCTCAACACGATATGGTGC
GAGTGAAAGCTGCTCTAAACAGGCAATCTAAAACTCGGCTGATTGGTCCC
AACTGCCCTGGTATCATCAAACCTGGAGAATGTAAGATTGGCATTATGCC
TGGGTATATTCACAAACCTGGGCGGGTTGGAATTGTTTCTCGATCTGGTA
CCTTGACCTACGAAGCAGTTTTTCAAACAACTGTAGTTGGCCTTGGACAA
TCAACCTGTGTAGGTATAGGTGGGGATCCTTTTAATGGGACAAACTTTGT
TGATTGCCTTGAAAAGTTCCTAGTTGATCCCCAGACAGAAGGTATTATTC
TAATAGGAGAGATCGGTGGGACTGCAGAAGAGGATGCCGCTGCCTT
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