CV884400
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_STAAC (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain COL) GN=sucD PE=3 SV=1) HSP 1 Score: 249.98 bits (637), Expect = 1.376e-65 Identity = 125/201 (62.19%), Postives = 147/201 (73.13%), Query Frame = 1 Query: 235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837 +VF+DKNT+V+ QGITG FHT+Q ++YGTK+V GVTP KGG G+PVFN+V EAK ET A SVIYVP PF LD+V+CITE IP DMV+VK L + KTRL+GPNCPG+I ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T G+GQ+T VGIGGDP NGTNF+D L+ F D +T Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDDET 201
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_STAES (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sucD PE=3 SV=1) HSP 1 Score: 249.21 bits (635), Expect = 2.347e-65 Identity = 123/201 (61.19%), Postives = 148/201 (73.63%), Query Frame = 1 Query: 235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837 +VF+DKNT+V+ QGITG FHT+Q ++YGT++V GVTP KGG G+PV+N+V EAK ET AN SV+YVP PF LD+V+CITE IP DMV+VK L + KTRL+GPNCPG+I ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T G+GQ+T VGIGGDP NGTNF+D L+ F D +T Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAKNETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDSET 201
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_STAEQ (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sucD PE=3 SV=1) HSP 1 Score: 249.21 bits (635), Expect = 2.347e-65 Identity = 123/201 (61.19%), Postives = 148/201 (73.63%), Query Frame = 1 Query: 235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837 +VF+DKNT+V+ QGITG FHT+Q ++YGT++V GVTP KGG G+PV+N+V EAK ET AN SV+YVP PF LD+V+CITE IP DMV+VK L + KTRL+GPNCPG+I ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T G+GQ+T VGIGGDP NGTNF+D L+ F D +T Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAKNETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGGDPVNGTNFIDVLKAFNEDSET 201
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_AQUAE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Aquifex aeolicus GN=sucD PE=3 SV=1) HSP 1 Score: 233.802 bits (595), Expect = 1.021e-60 Identity = 116/202 (57.43%), Postives = 143/202 (70.79%), Query Frame = 1 Query: 235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVK-AALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837 A+ V+K+T+V+ QGITGK G+FH +Q EYGT++V GVTP KGG E G+PVFN+V EA ET AN S+I+VP PF ++LVVCITEGIP DM+ VK L +L+GPNCPG+I PGE K+GIMPG+I K G++GIVSRSGTLTYEA +Q T GLGQST VGIGGDP +G D +E F DP+T Sbjct: 2 AILVNKDTKVVVQGITGKEGSFHAKQCKEYGTQVVAGVTPGKGGMEVEGIPVFNTVKEAVKETGANCSLIFVPAPFAADAIVEALDAGIELVVCITEGIPVKDMMMVKDYMLKNYPNAKLVGPNCPGVITPGEAKVGIMPGHIFKRGKIGIVSRSGTLTYEAAYQLTKYGLGQSTAVGIGGDPVHGLTHRDVIEMFNKDPET 203
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD2_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit alpha 2 OS=Archaeoglobus fulgidus GN=sucD2 PE=3 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 1.992e-56 Identity = 112/201 (55.72%), Postives = 138/201 (68.66%), Query Frame = 1 Query: 235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837 A+ VD+ T+V+ QGITG G FHTE+ + YGTK+V GVTP KGGTE LG+PV++SV EA E ANASVI+VP PF + ++VCITEGIP HD +++ + T LIGPNCPGII PG+ +GIMP I KPG VGIVSRSGTLTY+ + T +GLGQST VGIGGD GT+FV+ L F D +T Sbjct: 2 AIIVDERTKVVVQGITGYQGKFHTERMLNYGTKIVAGVTPGKGGTEVLGVPVYDSVKEAVREADANASVIFVPAPFAADAVMEAADAGIKVIVCITEGIPVHDELKMYWRVKEAGAT-LIGPNCPGIISPGKTHLGIMPVQIFKPGNVGIVSRSGTLTYQIAYNLTKLGLGQSTVVGIGGDRIIGTDFVEVLRLFEDDKET 201
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCA_YEAST (Succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=LSC1 PE=1 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 2.601e-56 Identity = 111/201 (55.22%), Postives = 134/201 (66.67%), Query Frame = 1 Query: 238 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837 + + K+T+VI QG TGK GTFH + EYGT +VGG PKK G HLG PVF SV +A ET A AS I+VPPP + L VCITEGIPQHDM+ + L Q KTRL+GPNCPGII P + +IGI P I + G++GI+SRSGTLTYEAV QTT LGQS +G+GGD F GT+F+D L+ FL D T Sbjct: 31 LLLPKDTKVIFQGFTGKQGTFHASISQEYGTNVVGGTNPKKAGQTHLGQPVFASVKDAIKETGATASAIFVPPPIAAAAIKESIEAEIPLAVCITEGIPQHDMLYIAEMLQTQDKTRLVGPNCPGIINPATKVRIGIQPPKIFQAGKIGIISRSGTLTYEAVQQTTKTDLGQSLVIGMGGDAFPGTDFIDALKLFLEDETT 231
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCD_METTH (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Methanobacterium thermoautotrophicum GN=sucD PE=3 SV=1) HSP 1 Score: 214.157 bits (544), Expect = 8.368e-55 Identity = 112/200 (56.00%), Postives = 134/200 (67.00%), Query Frame = 1 Query: 238 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837 + +D++TR + QGITGK G+FHT Q +EYGT++V GVTP KGG E LG+ V+NSV E E NAS+I+VP PF LDLVV ITE IP HD +++ +R KT +IGPN PGII PG K+GIMP +I G +GIVSRSGTLTYE Q T G GQSTCVGIGGDP G FVD LE+F DP T Sbjct: 7 ILLDEDTRCLVQGITGKQGSFHTRQMLEYGTRIVAGVTPGKGGQEFLGVDVYNSVEEVTEEMDVNASIIFVPAPFAKDAAFESIKH-LDLVVIITEHIPVHDSMQIMEYASRMGKT-VIGPNTPGIITPGIGKLGIMPTHIFTEGTIGIVSRSGTLTYEFAAQLTEAGFGQSTCVGIGGDPVTGLGFVDVLERFEDDPGT 204
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: MTKB_METEA (Malate--CoA ligase subunit alpha OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=mtkB PE=3 SV=2) HSP 1 Score: 213.001 bits (541), Expect = 1.864e-54 Identity = 104/204 (50.98%), Postives = 137/204 (67.16%), Query Frame = 1 Query: 235 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNR---QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837 ++ +D+ T ++ QGITG GTFH ++ I YG+ +VGGVTP KGG H G+PVFN+V EA T A S+ +V PPF L LV IT+GIP DM+RVK L R + +T ++GPNC GII PG+ +GIMPG+I+ PG+VG++SRSGTL YEA Q +G+G ST VGIGGDP NG++F+D L F DP+T Sbjct: 2 SILIDEKTPILVQGITGDKGTFHAKEMIAYGSNVVGGVTPGKGGKTHCGVPVFNTVKEAVEATGATTSITFVAPPFAADAIMEAADAGLKLVCSITDGIPAQDMMRVKRYLRRYPKEKRTMVVGPNCAGIISPGKSMLGIMPGHIYLPGKVGVISRSGTLGYEAAAQMKELGIGISTSVGIGGDPINGSSFLDHLALFEQDPET 205
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCA2_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Trichomonas vaginalis GN=ALPHA-SCS2 PE=3 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 7.084e-54 Identity = 108/204 (52.94%), Postives = 139/204 (68.14%), Query Frame = 1 Query: 229 QPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837 QP +F+DK+TRV+ QGI G G +H+ EYGTK+VG V PKK G GLP+F ++ E T ANAS+I+VP P + LVVCITE IPQHDM++VK + +++ +LIGPNCPG+I+PG K+GI+P I + G++GIVSRSGTLTYEA + TT GLGQST VGIGGDPF G D +++F DPQT Sbjct: 12 QPLLFIDKDTRVVIQGI-GNQGQYHSRLMREYGTKVVGAVHPKKAGKIIAGLPIFKNMKEVVKRTDANASLIFVPAPGAAAACIEAAEAGMGLVVCITEHIPQHDMIKVKKVM-KETGCQLIGPNCPGLIQPGTHTKLGIIPTNIFRNGKIGIVSRSGTLTYEAAYATTQAGLGQSTVVGIGGDPFAGQLHTDVIKRFAADPQT 213
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCA3_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit alpha-3, mitochondrial OS=Trichomonas vaginalis GN=ALPHA-SCS3 PE=3 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 9.251e-54 Identity = 107/204 (52.45%), Postives = 140/204 (68.63%), Query Frame = 1 Query: 229 QPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837 QP +F+DK+T+V+ QGI G G FH+ +YGTK+VG V PKK G+ GLP+F ++ E T ANAS+I+VP P + LVVCITE IPQHDM++VK + +++ +LIGPNCPG+I+PG K+GI+P I G++GIVSRSGTLTYEA + TT+ GLGQST VGIGGDPF G D +++F DPQT Sbjct: 12 QPLLFIDKDTKVVIQGI-GNQGQFHSRLMRQYGTKVVGAVHPKKAGSIIAGLPIFKNMKEVVKRTDANASLIFVPAPGAAAACIEAAQAGMGLVVCITEHIPQHDMIKVKKVM-KETGCQLIGPNCPGLIQPGTHTKLGIIPTNIFNNGKIGIVSRSGTLTYEAAYATTLAGLGQSTVVGIGGDPFAGQLHTDVVKRFAADPQT 213 The following BLAST results are available for this feature:
BLAST of CV884400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884400 ID=CV884400; Name=CV884400; organism=Citrus sinensis; type=EST; length=896bpback to top |