CV884399

Overview
NameCV884399
Unique NameCV884399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_GEOUR (Elongation factor Tu OS=Geobacter uraniireducens (strain Rf4) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.515e-32
Identity = 90/265 (33.96%), Postives = 133/265 (50.19%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 832
            + K H+NI  IGHVD GK+T T  +   L G  +   + F++               +D    ERERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  E+   L    +  + +P +    +   EGD     +  L       L++A+D+ I EP R  DKP  +P++DV+ I G GTV  GRVE G++K G
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITKVLAGKGQAEFKAFDQ---------------IDNAPEERERGITIATAHVEYETDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKADMVD---DEELLELVELEIRELLSSYDFPGDDIPIIKGSALKALEGD-----TGELGEQAIMKLMEAVDSYIPEPVRAIDKPFLMPVEDVFSISGRGTVATGRVERGIVKVG 242          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_CORA7 (Elongation factor Tu OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.515e-32
Identity = 97/262 (37.02%), Postives = 142/262 (54.20%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDAL-DNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 823
            + K H+NI  IGHVD GK+TTT         I K + + + +E       +F +  ++DK   E+ERGITI+I+  ++ T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  E+   L +  Y+ E+ P V IS     EGD    +S  +D      L+ A  D+I +P+R  DKP  +P++D++ I G GTV  GRVE G L
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTTTA-------AITKVLADAYPEE-----NTAFAFD-MIDKAPEEKERGITINISHVEYSTPKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKCDMVD---DEEIIELVEMEIRELLAEQDYD-EEAPIVHISALKALEGDEKWVQSV-ID------LMQACDDSIPDPERELDKPFLMPIEDIFTITGRGTVVTGRVERGSL 238          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_CLONN (Elongation factor Tu OS=Clostridium novyi (strain NT) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.515e-32
Identity = 89/262 (33.97%), Postives = 132/262 (50.38%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 832
            + K H+NI  IGHVD GK+TTT  +   L       ++ +E                +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           + +  EV   L + G++ ++ P V  S  +     +    LD      L+ A+D  I  P+R +D+P  +P++DV+ I G GTV  GRVE GVL  G
Sbjct:    8 RNKPHVNIGTIGHVDHGKTTTTAAITMTLAKAGGAEVQNYED---------------IDKAPEEKERGITINTSHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVNHIVVFLNKADQVD---DPELLELVEMEVRELLSEYGFDGDECPVVVGSALKAIEEGDDQCILD------LMKAVDEYIPTPERATDQPFLMPVEDVFTITGRGTVATGRVERGVLHVG 238          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: CYSNC_PSEAE (Bifunctional enzyme cysN/cysC OS=Pseudomonas aeruginosa GN=cysNC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.515e-32
Identity = 81/272 (29.78%), Postives = 141/272 (51.84%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRS--FKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG 859
            + K  +  +  G+VD GKST  G L++    I +  +E   +++ ++         A ++D L+AERE+GITID+A   F T K    + D PGH  + +NM TG S  D A+++ID+  G          QTR H+ +A  LG++ ++   NKMD     + +  +++I  +  ++ +K+G     + FVP+S  +GDN++ +S    WY G +L++ L+ +      +   +R P+Q V +         G + +GV++ G  V   PSG
Sbjct:   20 ERKELLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKVGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILIDARYG-------VQTQTRRHSFIASLLGIRHIVVAINKMD--LKDFDQGVFEQIKADYLAFAEKIGLKTSSLHFVPMSALKGDNVVNKSERSPWYAGQSLMEILETVEIAADRNLDDMRFPVQYVNRPNLNFRGFAGTLASGVVRKGDEVVALPSG 282          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_RICBR (Elongation factor Tu OS=Rickettsia bellii (strain RML369-C) GN=tuf PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.202e-32
Identity = 88/269 (32.71%), Postives = 141/269 (52.42%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRV-IERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVV 841
            + K H+NI  IGHVD GK++ T  +   LG  +K + ++++++               +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV +M+   NK+D           + +  EV   L K  +  +++P +    +   EG    E++ +        L+DA+D+ I +P R ++KP  +P++DV+ I G GTV  GR+E G +K G  V
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITMVLGKDNKDIKVKKYDE---------------IDAAPEEKERGITISTAHVEYETKSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPKMVVFLNKVDMVD---DPDLLELVEMEVRELLSKYDFPGDEIPIIRGSALQALEGKPEGEKAIH-------ELMDAVDSYIPQPIRETEKPFLMPIEDVFSISGRGTVVTGRIEAGKVKVGEAV 244          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_RICB8 (Elongation factor Tu OS=Rickettsia bellii (strain OSU 85-389) GN=tuf PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.202e-32
Identity = 88/269 (32.71%), Postives = 141/269 (52.42%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRV-IERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVV 841
            + K H+NI  IGHVD GK++ T  +   LG  +K + ++++++               +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV +M+   NK+D           + +  EV   L K  +  +++P +    +   EG    E++ +        L+DA+D+ I +P R ++KP  +P++DV+ I G GTV  GR+E G +K G  V
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITMVLGKDNKDIKVKKYDE---------------IDAAPEEKERGITISTAHVEYETKSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPKMVVFLNKVDMVD---DPDLLELVEMEVRELLSKYDFPGDEIPIIRGSALQALEGKPEGEKAIH-------ELMDAVDSYIPQPIRETEKPFLMPIEDVFSISGRGTVVTGRIEAGKVKVGEAV 244          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_LACLS (Elongation factor Tu OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=tuf PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.202e-32
Identity = 93/266 (34.96%), Postives = 137/266 (51.50%), Query Frame = 2
Query:   41 IMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 832
            +  + K H+NI  IGHVD GK+T +         I K + ++   +A +           +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GVK +I   NK D       +   + +  EV   L +  +  + +P +      G  +   +    W  K   L+D +D  I  P+R +DKPL LP++DV+ I G GTV  GR+E G +K G
Sbjct:    5 VYDRSKPHVNIGTIGHVDHGKTTLSA-------AISKVLSDKGYSKATDFAS--------IDAAPEERERGITINTAHIEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVKYLIVFLNKADLVD---DEELMELVEMEVRDLLSEYDFPGDDIPVI-----AGSALGALNGEPQWVAKVEELMDIVDEYIPTPERDTDKPLLLPVEDVFSITGRGTVASGRIERGTVKVG 240          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_LACLM (Elongation factor Tu OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=tuf PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.202e-32
Identity = 93/266 (34.96%), Postives = 137/266 (51.50%), Query Frame = 2
Query:   41 IMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 832
            +  + K H+NI  IGHVD GK+T +         I K + ++   +A +           +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GVK +I   NK D       +   + +  EV   L +  +  + +P +      G  +   +    W  K   L+D +D  I  P+R +DKPL LP++DV+ I G GTV  GR+E G +K G
Sbjct:    5 VYDRSKPHVNIGTIGHVDHGKTTLSA-------AISKVLSDKGYSKATDFAS--------IDAAPEERERGITINTAHIEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVKYLIVFLNKADLVD---DEELMELVEMEVRDLLSEYDFPGDDIPVI-----AGSALGALNGEPQWVAKVEELMDIVDEYIPTPERDTDKPLLLPVEDVFSITGRGTVASGRIERGTVKVG 240          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_LACLA (Elongation factor Tu OS=Lactococcus lactis subsp. lactis GN=tuf PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.202e-32
Identity = 93/266 (34.96%), Postives = 137/266 (51.50%), Query Frame = 2
Query:   41 IMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 832
            +  + K H+NI  IGHVD GK+T +         I K + ++   +A +           +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GVK +I   NK D       +   + +  EV   L +  +  + +P +      G  +   +    W  K   L+D +D  I  P+R +DKPL LP++DV+ I G GTV  GR+E G +K G
Sbjct:    5 VYDRSKPHVNIGTIGHVDHGKTTLSA-------AISKVLSDKGYSKATDFAS--------IDAAPEERERGITINTAHIEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVKYLIVFLNKADLVD---DEELMELVEMEVRDLLSEYDFPGDDIPVI-----AGSALGALNGEPQWVAKVEELMDIVDEYIPTPERDTDKPLLLPVEDVFSITGRGTVASGRIERGTVKVG 240          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_DESVM (Elongation factor Tu OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=tuf PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.202e-32
Identity = 96/269 (35.69%), Postives = 134/269 (49.81%), Query Frame = 2
Query:   44 MGKEK-----THINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 832
            MGKEK      H+NI  IGH+D GK+T T   I K+ G+                   F     +DK   E+ERGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D  +L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L   G+  + +P +  S  +     +   + D      LLDA D+ I EP+R  DKP  +P++DV+ I G GTV  GRVE G++K G
Sbjct:    1 MGKEKFERKKPHVNIGTIGHIDHGKTTLTA-AITKVAGL--------------RGNGKFVAFDEIDKAPEEKERGITIATAHVEYETATRHYAHVDCPGHADYIKNMITGAAQMDGGILVVAATDGPMP-------QTREHILLARQVGVPYLVVFLNKCDMVD---DEELLELVELEVRELLSLYGFPGDDIPVIRGSALKALE-TDDPNSADAAPVVALLDACDSYIPEPQRDIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVG 243          
The following BLAST results are available for this feature:
BLAST of CV884399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_GEOUR5.515e-3233.96Elongation factor Tu OS=Geobacter uraniireducens (... [more]
EFTU_CORA75.515e-3237.02Elongation factor Tu OS=Corynebacterium aurimucosu... [more]
EFTU_CLONN5.515e-3233.97Elongation factor Tu OS=Clostridium novyi (strain ... [more]
CYSNC_PSEAE5.515e-3229.78Bifunctional enzyme cysN/cysC OS=Pseudomonas aerug... [more]
EFTU_RICBR7.202e-3232.71Elongation factor Tu OS=Rickettsia bellii (strain ... [more]
EFTU_RICB87.202e-3232.71Elongation factor Tu OS=Rickettsia bellii (strain ... [more]
EFTU_LACLS7.202e-3234.96Elongation factor Tu OS=Lactococcus lactis subsp. ... [more]
EFTU_LACLM7.202e-3234.96Elongation factor Tu OS=Lactococcus lactis subsp. ... [more]
EFTU_LACLA7.202e-3234.96Elongation factor Tu OS=Lactococcus lactis subsp. ... [more]
EFTU_DESVM7.202e-3235.69Elongation factor Tu OS=Desulfovibrio vulgaris (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003B11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884399 ID=CV884399; Name=CV884399; organism=Citrus sinensis; type=EST; length=866bp
TTTTAGCAAATTTCATATCAAGGTTTTATACTAGATTTGCATAATGGGTA
AGGAGAAGACTCACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGA
AAGTCGACCACCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAA
GCGTGTGATCGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGT
CATTCAAATACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGT
GGTATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTA
CTGCACCGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGA
TTACCGGTACCTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACC
ACCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCA
TGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTA
ACAAGATGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAA
ATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGA
GAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTG
AGAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACGCT
CTTGACAATATCAATGAGCCGAAGAGGCCCTCAGACAAGCCCCTTCGTCT
GCCACTCCAGGACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGTGG
GTCGCGTTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGACATTTGGC
CCCTCTGGATTGACAA
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