CV884399

Overview
NameCV884399
Unique NameCV884399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_LEUMM (Elongation factor Tu OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=tuf PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.737e-31
Identity = 94/269 (34.94%), Postives = 138/269 (51.30%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGD----NMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 832
            + K H+NI  IGHVD GK+T T         I K + E+   +A +  +        +D    E+ERGITI+ +  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  +  + +P +    +   EGD     +IE            L+D +D+ I EP R +DKP  +P++DV+ I G GTV  GRV+ GVL  G
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AISKVLAEKQGVDATDFAE--------IDNAPEEKERGITINTSHIEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVDYLVVFLNKTDLVD---DEELVELVEMEVRELLSEYDFPGDDIPVLKGSALKALEGDPEQVKVIEE-----------LMDTVDSYIPEPARETDKPFLMPVEDVFTITGRGTVASGRVDRGVLTTG 240          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_LEUCK (Elongation factor Tu OS=Leuconostoc citreum (strain KM20) GN=tuf PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.737e-31
Identity = 94/269 (34.94%), Postives = 138/269 (51.30%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGD----NMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 832
            + K H+NI  IGHVD GK+T T         I K + E+    A +  +        +D    E+ERGITI+ +  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV+ ++   NK D       +   + +  EV   L +  +  + +P +    +   EGD     +IE            L+D +D+ I EPKR +DKP  +P++DV+ I G GTV  GRV+ GVL  G
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AISKVLAEKQGITATDFAE--------IDNAPEEKERGITINTSHIEYETETRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVEYLVVFLNKTDLVD---DEELVELVEMEVRELLSEYDFPGDDIPVIKGSALKALEGDPEQVKVIEE-----------LMDTVDSYIPEPKRETDKPFLMPVEDVFTITGRGTVASGRVDRGVLTTG 240          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_LACBA (Elongation factor Tu OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=tuf PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.737e-31
Identity = 95/265 (35.85%), Postives = 137/265 (51.70%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 832
            + K H+NI  IGH+D GK+T T         I K + ++   +A +       YA + D    ERERGITI+ A  ++ET K +   IDAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           D +  EV   L +  Y  + +P +    +   EGD   E+           L+D +D+ I  P+R +DKP  +P++DV+ I G GTV  GR++ G +K G
Sbjct:    9 RTKPHVNIGTIGHIDHGKTTLTA-------AITKVLADKGLAKAED-------YADI-DAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVDYIVVFLNKTDLVD---DDELVDLVEMEVRELLSEYDYPGDDIPVIRGSALKALEGDEEQEKVI-------LHLMDVVDDYIPTPERENDKPFLMPVEDVFTITGRGTVASGRIDRGTVKVG 241          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_DEIGD (Elongation factor Tu OS=Deinococcus geothermalis (strain DSM 11300) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.737e-31
Identity = 90/268 (33.58%), Postives = 136/268 (50.75%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGP------TLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 832
            + K H+N+  IGHVD GK+T T  + +    +D  V    EK A +           +DK   E+ RGITI+ A  ++ T   + + +D PGH D++KNMITG +Q D A+L++ S  G          QTREH LLA  +GV  ++   NK+D       +   + +  EV   L K  +  + +P +  S  +    ++++      + P       LLDA+D  I  P+R +DK   +P++DV+ I G GTV  GRVE GV K G
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAAITFTAAAMDPTV----EKLAYDQ----------IDKAPEEKARGITINTAHVEYNTPARHYSHVDCPGHADYVKNMITGAAQMDGAILVVSSADGPMP-------QTREHILLARQVGVPYIVVFMNKVDMVD---DEELLELVEMEVRELLSKYEFPGDDLPVIKGSALQALEALQQNPKTARGENPWVDKIWELLDAIDAYIPTPERATDKTFLMPVEDVFTITGRGTVATGRVERGVCKVG 251          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_CLOTE (Elongation factor Tu OS=Clostridium tetani GN=tufA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.737e-31
Identity = 94/263 (35.74%), Postives = 136/263 (51.71%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 832
            + K H+NI  IGHVD GK+T T  +   LG       + F K        +FKY  + DK   E+ERGITI  +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +   A   E+V+ EV   + + G+  +  P V  S  +     E            L+ A+D  I  P+R +DKP  +P++D++ I G GTV  GRVE G+LK G
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTILGH------KGFAK--------AFKYDEI-DKAPEEKERGITISTSHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVEHIVVFLNKAD----QVDDAELIELVEMEVRELMNEYGFPGDDAPVVVGSALKALENPEDDAATQCIM--DLMAAVDEYIPTPERATDKPFLMPVEDIFTITGRGTVATGRVERGILKVG 242          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_CHLPD (Elongation factor Tu OS=Chlorobium phaeobacteroides (strain DSM 266) GN=tuf PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.737e-31
Identity = 92/263 (34.98%), Postives = 133/263 (50.57%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 826
            ++K H+NI  IGHVD GK+T T  +   L             +     +R F     +DK   ERERGITI  A  +++T K +   ID PGH D+IKNMITG +Q D A+L++  T G          QTREH LLA  + V  ++   NK+D   P+      + +  E+   L +  +  + +P +    +   +GD   E+S          L+DA+D  I EP R  DKP  +P++DV+ I G GTV  GR+E G +K
Sbjct:    8 RDKPHVNIGTIGHVDHGKTTLTAAITSVLA------------KQGLAQQRDFGS---IDKAPEERERGITISTAHVEYQTKKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAGTDGPMP-------QTREHILLARQVNVPALVVYLNKVDIADPEL----IELVELELRELLTEYNFPGDDIPIIKGSALKALDGDLEGEKSI-------MELMDAVDEFIPEPLRDIDKPFLMPVEDVFSISGRGTVGTGRIERGRIK 237          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_THIDA (Elongation factor Tu OS=Thiobacillus denitrificans (strain ATCC 25259) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.574e-31
Identity = 97/270 (35.93%), Postives = 133/270 (49.26%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGH----LIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 832
            + K H+N+  IGHVD GK+T T      L  K GG  K+  E                   +D    E+ RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ S  G          QTREH LLA  +GV  +I   NK D        A   E+V+ EV   L K  +  +  P +    +   EGD      +++       L +ALD  I EP+R  DKP  +P++DV+ I G GTV  GRVE GV+K G
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAAITTILSKKFGGAAKKYDE-------------------IDSSPEEKARGITINTAHVEYETASRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSSADGPMP-------QTREHILLARQVGVPYIIVYMNKADMV----DDAELLELVEMEVRELLSKYDFPGDDTPIIVGSALKALEGD-----QSDIGEPSIIKLAEALDTYIPEPERAIDKPFLMPVEDVFSISGRGTVVTGRVERGVIKVG 242          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_SYNFM (Elongation factor Tu OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.574e-31
Identity = 90/264 (34.09%), Postives = 137/264 (51.89%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 826
            + K H+N+  +GH+D GK+T T         I K++ +R   E    ++        +DK   ERERGITI  A  ++ET K +   +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LL+  +GV  ++   NK+D            E+V+ E+   L K G+  + VP +    +   E D+     T   +     L++A+D  + +P R  DKP  +P++DV+ I G GTV  GRVE GV++
Sbjct:    8 RTKPHVNVGTVGHIDHGKTTLTA-------AITKQLAKRGRAEFVPFDQ--------IDKAPEERERGITIATAHVEYETDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAADDGPMP-------QTREHILLSRQVGVPYIVVFLNKVDMV----DDPELIELVELELRELLSKYGFPGDDVPIIKGSALRALEADDPEHPDTKCIF----ELMEAIDAYVPDPVRDIDKPFLMPIEDVFSISGRGTVVTGRVERGVIR 241          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_RHOE4 (Elongation factor Tu OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=tuf PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.574e-31
Identity = 100/266 (37.59%), Postives = 143/266 (53.76%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFE--KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK----EVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETG 817
            + K H+NI  IGHVD GK+TTT         I K + + F    EA+  ++        +DK   E+ RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           DEI++    EV   L    ++ E+ P +PIS     EGD    +S  LD      L+ A+D +I +P R +DKP  +P++DV+ I G GTV  GR+E G
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTTTA-------AITKVLADAFPDLNEASAFDQ--------IDKAPEEKARGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADMVDD-------DEILELVEMEVRELLAAQEFD-EEAPVIPISALKALEGDPKWTQSI-LD------LMAAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRIERG 236          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_PROMT (Elongation factor Tu OS=Prochlorococcus marinus (strain NATL2A) GN=tuf PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.574e-31
Identity = 91/263 (34.60%), Postives = 136/263 (51.71%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDW-YKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 832
            + K H+NI  IGHVD GK+T T         I K + ++ + EA +  +        +D    ERERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D       +   + +  E+   L    +  + +P V +SG +    IE     DW  K   L+ A+D +I EP+R  DKP  + ++DV+ I G GTV  GR+E G +  G
Sbjct:    8 RNKPHVNIGTIGHVDHGKTTLTA-------AITKVLAKKGQAEAQDYAE--------IDGAPEERERGITINTAHVEYETEGRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGAM-------AQTKEHILLAKQVGVPALVVALNKCDMVD---DEEMIELVEMEIRELLTSYDFPGDDIPVVQVSGLKA---IEGEA--DWETKIDDLMTAVDASIPEPEREIDKPFLMAIEDVFSITGRGTVATGRIERGKVTVG 240          
The following BLAST results are available for this feature:
BLAST of CV884399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_LEUMM2.737e-3134.94Elongation factor Tu OS=Leuconostoc mesenteroides ... [more]
EFTU_LEUCK2.737e-3134.94Elongation factor Tu OS=Leuconostoc citreum (strai... [more]
EFTU_LACBA2.737e-3135.85Elongation factor Tu OS=Lactobacillus brevis (stra... [more]
EFTU_DEIGD2.737e-3133.58Elongation factor Tu OS=Deinococcus geothermalis (... [more]
EFTU_CLOTE2.737e-3135.74Elongation factor Tu OS=Clostridium tetani GN=tufA... [more]
EFTU_CHLPD2.737e-3134.98Elongation factor Tu OS=Chlorobium phaeobacteroide... [more]
EFTU_THIDA3.574e-3135.93Elongation factor Tu OS=Thiobacillus denitrificans... [more]
EFTU_SYNFM3.574e-3134.09Elongation factor Tu OS=Syntrophobacter fumaroxida... [more]
EFTU_RHOE43.574e-3137.59Elongation factor Tu OS=Rhodococcus erythropolis (... [more]
EFTU_PROMT3.574e-3134.60Elongation factor Tu OS=Prochlorococcus marinus (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003B11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884399 ID=CV884399; Name=CV884399; organism=Citrus sinensis; type=EST; length=866bp
TTTTAGCAAATTTCATATCAAGGTTTTATACTAGATTTGCATAATGGGTA
AGGAGAAGACTCACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGA
AAGTCGACCACCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAA
GCGTGTGATCGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGT
CATTCAAATACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGT
GGTATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTA
CTGCACCGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGA
TTACCGGTACCTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACC
ACCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCA
TGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTA
ACAAGATGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAA
ATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGA
GAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTG
AGAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACGCT
CTTGACAATATCAATGAGCCGAAGAGGCCCTCAGACAAGCCCCTTCGTCT
GCCACTCCAGGACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGTGG
GTCGCGTTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGACATTTGGC
CCCTCTGGATTGACAA
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