CV884399

Overview
NameCV884399
Unique NameCV884399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_NOCSJ (Elongation factor Tu OS=Nocardioides sp. (strain BAA-499 / JS614) GN=tuf PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.574e-31
Identity = 87/265 (32.83%), Postives = 139/265 (52.45%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 832
            + K H+NI  IGH+D GK+T T         I K + +++       +   F     +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  +  + +P V ++ F        + N D   G ++L+ ++ ++E    P+R ++KP  +P++DV+ I G GTV  GR+E G++K G
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTA-------AITKVLHDKYP------DLNPFTPFDEIDKAPEERQRGITISIAHVEYQTESRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPALVVALNKCDMVD---DEELIELVEMEVRELLSEYEFPGDDIPVVRVAAFP-------ALNGDAKWGESVLELMNAVDEYIPTPERDTEKPFLMPVEDVFTITGRGTVITGRIERGIVKVG 242          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_MYCUA (Elongation factor Tu OS=Mycobacterium ulcerans (strain Agy99) GN=tuf PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.574e-31
Identity = 96/263 (36.50%), Postives = 142/263 (53.99%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 823
            + K H+NI  IGHVD GK+T T         I K + +++     E+N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ E  P V +S     EGD     S          L+DA+D +I +P R +D+P  +P++DV+ I G GTV  GRVE G++
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKYP----ELNESRAFDQ---IDNAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDAVD---DEELLELVEMEVRELLAAQEFD-EDAPVVRVSALKALEGDPKWVESVE-------QLMDAVDESIPDPVRETDRPFLMPVEDVFTITGRGTVVTGRVERGII 238          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_MYCPU (Elongation factor Tu OS=Mycoplasma pulmonis GN=tuf PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.574e-31
Identity = 92/262 (35.11%), Postives = 135/262 (51.53%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 823
            + K H+NI  IGHVD GK+T T  +   L           +K  AE       YA + D    E+ RGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D  +L++ +T G          QTREH LL+  +GV +M+   NK+D    +       E+  E+ S L + G++ +K P +    +   EG+   E++          L+DA+DN I  P +  DKP  L ++DV+ I G GTV  G+VE G L
Sbjct:    8 RSKEHVNIGTIGHVDHGKTTLTAAIATVLS----------KKGLAEAKD----YASI-DAAPEEKARGITINTAHIEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMP-------QTREHILLSKQVGVPKMVVFLNKVDMLEGEDEMIELVEL--EIRSLLSEYGFDGDKTPIIKGSALKALEGNPQYEKNIE-------ELMDAVDNYIETPVKELDKPFLLAVEDVFTITGRGTVATGKVERGQL 238          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_MYCMM (Elongation factor Tu OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=tuf PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.574e-31
Identity = 96/263 (36.50%), Postives = 142/263 (53.99%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 823
            + K H+NI  IGHVD GK+T T         I K + +++     E+N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ E  P V +S     EGD     S          L+DA+D +I +P R +D+P  +P++DV+ I G GTV  GRVE G++
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKYP----ELNESRAFDQ---IDNAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDAVD---DEELLELVEMEVRELLAAQEFD-EDAPVVRVSALKALEGDPKWVESVE-------QLMDAVDESIPDPVRETDRPFLMPVEDVFTITGRGTVVTGRVERGII 238          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_LACH4 (Elongation factor Tu OS=Lactobacillus helveticus (strain DPC 4571) GN=tuf PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.574e-31
Identity = 94/265 (35.47%), Postives = 132/265 (49.81%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 832
            + K H+NI  IGHVD GK+T T  +   L           EK  A+    S      +D    E+ERGITI+ A  ++ET K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           D +  EV   L +  Y  + +P V    +   EGD   +            L+D +D  I  P+R +DKP  +P++DV+ I G GTV  GR++ G +K G
Sbjct:    9 RTKPHVNIGTIGHVDHGKTTLTAAITTVLA----------EKGLAKAEDYS-----QIDAAPEEKERGITINTAHVEYETEKRHYAHMDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVNYIVVFLNKCDLVD---DPELIDLVEMEVRDLLTEYDYPGDDIPVVRGSALKALEGDKEAQEQI-------LKLMDTVDEYIPTPERQTDKPFLMPVEDVFTITGRGTVASGRIDRGTVKVG 241          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_BACC2 (Elongation factor Tu OS=Bacillus cereus (strain G9842) GN=tuf PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.574e-31
Identity = 90/275 (32.73%), Postives = 135/275 (49.09%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGD-----NMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVV 841
            + K H+NI  IGHVD GK+T T  +   + K GG + R  ++                  +D    ERERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D  +L++ +  G          QTREH LL+  +GV  ++   NK D       +   + +  EV   L + G+  + +P +    +   +G+      +IE  T +D Y           I  P+R +DKP  +P++DV+ I G GTV  GRVE G++K G VV
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLAKAGGAEARGYDQ------------------IDAAPEERERGITISTAHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMP-------QTREHILLSRQVGVPYIVVFLNKCDMVD---DEELLELVEMEVRDLLSEYGFPGDDIPVIKGSALKALQGEADWEAKIIELMTEVDAY-----------IPTPERETDKPFLMPIEDVFSITGRGTVATGRVERGIVKVGDVV 243          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_STRCJ (Elongation factor Tu OS=Streptomyces cinnamoneus GN=tuf PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 4.668e-31
Identity = 93/265 (35.09%), Postives = 131/265 (49.43%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGI--DKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDAL----DNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 826
            + K H+NI  IGHVD GK+T T  +   L     D      F++               +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA   GV  ++   NK D    +      +  V+E+ S  +  G N   V    +   EGD         +W  G  LL  +    +NI +P+R  DKP  +P++DV+ I G GTV  GR+E GVLK
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITKVLHDAIPDLNPFTPFDE---------------IDKAPEERQRGITISIAHVEYQTESRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQSGVPYIVVALNKADMVDDEEIMELVELEVRELLSEYEFDGDNCPVVQVSALKALEGDK--------EW--GEKLLGLMKAVDENIPQPERDVDKPFLMPIEDVFTITGRGTVVTGRIERGVLK 240          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_STRAU (Elongation factor Tu OS=Streptomyces aureofaciens GN=tuf1 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.668e-31
Identity = 93/266 (34.96%), Postives = 138/266 (51.88%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 826
            + K H+NI  IGH+D GK+T T         I K + +++     ++N  S      +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D       +   + +  EV   L +  +  + +P V +S     EGD         +W  G  LL  +D ++E    P R +DKP  +P++DV+ I G GTV  GR+E GVLK
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTA-------AITKVLHDKYP----DLNAASAFDQ--IDKAPEERQRGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYIVVALNKADMVD---DEEILELVELEVRELLSEYDFPGDDLPVVQVSALKALEGDK--------EW--GDKLLGLMDAVDEAIPTPPRDTDKPFLMPVEDVFTITGRGTVVTGRIERGVLK 240          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_PROM1 (Elongation factor Tu OS=Prochlorococcus marinus (strain NATL1A) GN=tuf PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.668e-31
Identity = 91/263 (34.60%), Postives = 136/263 (51.71%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDW-YKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 832
            + K H+NI  IGHVD GK+T T         I K + ++ + EA +  +        +D    ERERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D       +   + +  E+   L    +  + +P V +SG +    IE     DW  K   L+ A+D +I EP+R  DKP  + ++DV+ I G GTV  GR+E G +  G
Sbjct:    8 RNKPHVNIGTIGHVDHGKTTLTA-------AITKVLAKKGQAEAQDYAE--------IDGAPEERERGITINTAHVEYETDGRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGAM-------AQTKEHILLAKQVGVPALVVALNKCDMVD---DEEMIELVEMEIRELLTSYDFPGDDIPVVQVSGLKA---IEGEA--DWETKIDDLMTAVDASIPEPEREIDKPFLMAVEDVFSITGRGTVATGRIERGKVTVG 240          
BLAST of CV884399 vs. ExPASy Swiss-Prot
Match: EFTU_MYCVP (Elongation factor Tu OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.668e-31
Identity = 95/264 (35.98%), Postives = 143/264 (54.17%), Query Frame = 2
Query:   50 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKG-PTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 823
            + K H+NI  IGHVD GK+T T         I K + +++     ++N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ E+ P V +S     EGD          W K    L++A+D +I +P R +DKP  +P++DV+ I G GTV  GRVE G++
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKYP----DLNESRAFDQ---IDNAPEERQRGITINISHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADMVD---DEELIELVEMEVRELLAAQDFD-EEAPVVKVSALKALEGDE--------KWVKSVEELMEAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGII 238          
The following BLAST results are available for this feature:
BLAST of CV884399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_NOCSJ3.574e-3132.83Elongation factor Tu OS=Nocardioides sp. (strain B... [more]
EFTU_MYCUA3.574e-3136.50Elongation factor Tu OS=Mycobacterium ulcerans (st... [more]
EFTU_MYCPU3.574e-3135.11Elongation factor Tu OS=Mycoplasma pulmonis GN=tuf... [more]
EFTU_MYCMM3.574e-3136.50Elongation factor Tu OS=Mycobacterium marinum (str... [more]
EFTU_LACH43.574e-3135.47Elongation factor Tu OS=Lactobacillus helveticus (... [more]
EFTU_BACC23.574e-3132.73Elongation factor Tu OS=Bacillus cereus (strain G9... [more]
EFTU_STRCJ4.668e-3135.09Elongation factor Tu OS=Streptomyces cinnamoneus G... [more]
EFTU_STRAU4.668e-3134.96Elongation factor Tu OS=Streptomyces aureofaciens ... [more]
EFTU_PROM14.668e-3134.60Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_MYCVP4.668e-3135.98Elongation factor Tu OS=Mycobacterium vanbaalenii ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003B11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884399 ID=CV884399; Name=CV884399; organism=Citrus sinensis; type=EST; length=866bp
TTTTAGCAAATTTCATATCAAGGTTTTATACTAGATTTGCATAATGGGTA
AGGAGAAGACTCACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGA
AAGTCGACCACCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAA
GCGTGTGATCGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGT
CATTCAAATACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGT
GGTATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTA
CTGCACCGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGA
TTACCGGTACCTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACC
ACCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCA
TGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTA
ACAAGATGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAA
ATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGA
GAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTG
AGAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACGCT
CTTGACAATATCAATGAGCCGAAGAGGCCCTCAGACAAGCCCCTTCGTCT
GCCACTCCAGGACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGTGG
GTCGCGTTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGACATTTGGC
CCCTCTGGATTGACAA
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