CV884393

Overview
NameCV884393
Unique NameCV884393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPDA_DROME (Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic OS=Drosophila melanogaster GN=Gpdh PE=1 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 2.597e-32
Identity = 69/136 (50.74%), Postives = 93/136 (68.38%), Query Frame = -1
Query:  348 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSFVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSEGKP 755
            GFVDGL++G+NTKAA++R+G  EM  F  + +   K STFFESCGVADLITTC GGRNR+V+EAF  +   ++ ++LE EML GQKLQG  TA EV  +L  +G  + FPLF  +H+IC     P+ +++     P
Sbjct:  214 GFVDGLKLGDNTKAAVIRLGLMEMIRFVDVFYPGSKLSTFFESCGVADLITTCYGGRNRRVSEAFVTS--GKTIEELEKEMLNGQKLQGPPTAEEVNYMLKNKGLEDKFPLFTAIHKICTNQLKPNDLIDCIRNHP 347          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPDA_DROEZ (Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic OS=Drosophila ezoana GN=Gpdh1 PE=3 SV=4)

HSP 1 Score: 138.658 bits (348), Expect = 3.392e-32
Identity = 69/136 (50.74%), Postives = 92/136 (67.65%), Query Frame = -1
Query:  348 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSFVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSEGKP 755
            GFVDGL++G+NTKAA++R+G  EM  F  + +   K STFFESCGVADLITTC GGRNR+V+EAF  +   ++ ++LE EML GQKLQG  TA EV  +L  +G  + FPLF  +H+IC     P  +++     P
Sbjct:  214 GFVDGLKLGDNTKAAVIRLGLMEMIRFVDVFYPGSKLSTFFESCGVADLITTCYGGRNRRVSEAFVTS--GKTIEELEKEMLNGQKLQGPPTAEEVNYMLKNKGLEDKFPLFTAIHKICTNQLKPKDLIDCIRNHP 347          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPDA_RABIT (Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic OS=Oryctolagus cuniculus GN=GPD1 PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 4.430e-32
Identity = 72/137 (52.55%), Postives = 93/137 (67.88%), Query Frame = -1
Query:  348 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSF-VKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSEGKP 755
            GF DG+  G+NTKAA++R+G  EM AF+KL  S  V  +TF ESCGVADLITTC GGRNRKVAEAFA+    +S + LE EML GQKLQG  TARE++ +L  +G ++ FPLF  V+++C    P    +   +  P
Sbjct:  212 GFCDGIGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSPATFLESCGVADLITTCYGGRNRKVAEAFART--GKSIEQLEKEMLNGQKLQGPETARELHSILQHKGLVDWFPLFMAVYKVCYQGQPVGEFIRCLQNHP 346          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPDA_TAKRU (Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic OS=Takifugu rubripes GN=gpd1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.785e-32
Identity = 71/138 (51.45%), Postives = 94/138 (68.12%), Query Frame = -1
Query:  348 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSF--VKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSEGKP 755
            GF DGL  G+NTKAA++R+G  EM AF+++  +   V  +TF ESCGVADLITTC GGRNRKVA+AF K    +S ++LE EML+GQKLQG +TA EVY +L  +  ++ FPLF  V++IC    P S  +   +  P
Sbjct:  213 GFCDGLGFGDNTKAAVIRLGLMEMIAFARIFCTAGPVSSATFLESCGVADLITTCYGGRNRKVAKAFVKTG--KSIEELEKEMLEGQKLQGPATAAEVYRILKHKNLIDKFPLFNAVYQICYQGHPVSEFISCLQNHP 348          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPDA_PONAB (Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic OS=Pongo abelii GN=GPD1 PE=2 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 5.785e-32
Identity = 72/137 (52.55%), Postives = 93/137 (67.88%), Query Frame = -1
Query:  348 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSF-VKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSEGKP 755
            GF DGL  G+NTKAA++R+G  EM AF+KL  S  V  +TF ESCGVADLITTC GGRNRKVAEAFA+    +S + LE E+L GQKLQG  TARE++ +L  +G ++ FPLF  V+++C    P    +   +  P
Sbjct:  212 GFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFRSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFART--GKSIEQLEKELLNGQKLQGPETARELHSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIRCLQNHP 346          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPD1L_PONAB (Glycerol-3-phosphate dehydrogenase 1-like protein OS=Pongo abelii GN=GPD1L PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.868e-32
Identity = 70/137 (51.09%), Postives = 93/137 (67.88%), Query Frame = -1
Query:  348 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSF-VKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSEGKP 755
            GF DGL  G+NTKAA++R+G  EM AF+++     V  +TF ESCGVADLITTC GGRNR+VAEAFA+    ++ ++LE EML GQKLQG  T+ EVY +L  +G L+ FPLF  V++IC    P   ++   +  P
Sbjct:  214 GFCDGLRCGDNTKAAVIRLGLMEMIAFARIFCKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTG--KTIEELEKEMLNGQKLQGPQTSAEVYRILKQKGLLDKFPLFTAVYQICYESRPVQGMLSCLQSHP 348          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPD1L_HUMAN (Glycerol-3-phosphate dehydrogenase 1-like protein OS=Homo sapiens GN=GPD1L PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.289e-31
Identity = 70/137 (51.09%), Postives = 93/137 (67.88%), Query Frame = -1
Query:  348 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSF-VKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSEGKP 755
            GF DGL  G+NTKAA++R+G  EM AF+++     V  +TF ESCGVADLITTC GGRNR+VAEAFA+    ++ ++LE EML GQKLQG  T+ EVY +L  +G L+ FPLF  V++IC    P   ++   +  P
Sbjct:  214 GFCDGLRCGDNTKAAVIRLGLMEMIAFARIFCKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTG--KTIEELEKEMLNGQKLQGPQTSAEVYRILKQKGLLDKFPLFTAVYQICYESRPVQEMLSCLQSHP 348          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPD1L_MOUSE (Glycerol-3-phosphate dehydrogenase 1-like protein OS=Mus musculus GN=Gpd1l PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.683e-31
Identity = 70/137 (51.09%), Postives = 94/137 (68.61%), Query Frame = -1
Query:  348 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSF-VKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSEGKP 755
            GF DGL  G+NTKAA++R+G  EM AF+K+     V  +TF ESCGVADLITTC GGRNR+VAEAFA+    ++ ++LE E+L GQKLQG  T+ EVY +L  +G L+ FPLF  V++IC    P + ++   +  P
Sbjct:  214 GFCDGLRCGDNTKAAVIRLGLMEMIAFAKIFCKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFART--GKTIEELEKELLNGQKLQGPQTSAEVYRILRQKGLLDKFPLFTAVYQICYEGRPVTQMLSCLQSHP 348          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPDA_DROPS (Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic OS=Drosophila pseudoobscura pseudoobscura GN=Gpdh PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.871e-31
Identity = 68/136 (50.00%), Postives = 91/136 (66.91%), Query Frame = -1
Query:  348 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSFVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSEGKP 755
            GFVDGL++G+NTKAA++R+G  EM  F  + +   K STFFESCGVADLITTC GGRNR+V+EAF  +   ++ ++LE EML GQKLQG  TA EV  +L  +   + FPLF  +H+IC     P  +++     P
Sbjct:  214 GFVDGLKLGDNTKAAVIRLGLMEMIRFVDVFYPGSKLSTFFESCGVADLITTCYGGRNRRVSEAFVTS--GKTIEELEKEMLNGQKLQGPPTAEEVNYMLKNKKLEDKFPLFTAIHKICTNQLKPKDLIDCIRNHP 347          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPD1L_XENLA (Glycerol-3-phosphate dehydrogenase 1-like protein OS=Xenopus laevis GN=gpd1l PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.396e-31
Identity = 73/140 (52.14%), Postives = 90/140 (64.29%), Query Frame = -1
Query:  348 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSFVKDS----TFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSEGKP 755
            GF DGL  G+NTKAA++R+G  EM AF+ +   F KDS    TF ESCGVADLITTC GGRNRKVAEAF K    +S ++LE EML GQKLQG  T+ EVY +L  +  +  FPLF  V +IC    P   ++   +  P
Sbjct:  215 GFCDGLSCGDNTKAAVIRLGLMEMIAFANV---FCKDSVSIATFLESCGVADLITTCYGGRNRKVAEAFVKT--GKSIEELEKEMLNGQKLQGPQTSAEVYRILQQKNMVNNFPLFTAVFQICYEGKPVEDVISCLQSHP 349          
The following BLAST results are available for this feature:
BLAST of CV884393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
GPDA_DROME2.597e-3250.74Glycerol-3-phosphate dehydrogenase [NAD+], cytopla... [more]
GPDA_DROEZ3.392e-3250.74Glycerol-3-phosphate dehydrogenase [NAD+], cytopla... [more]
GPDA_RABIT4.430e-3252.55Glycerol-3-phosphate dehydrogenase [NAD+], cytopla... [more]
GPDA_TAKRU5.785e-3251.45Glycerol-3-phosphate dehydrogenase [NAD+], cytopla... [more]
GPDA_PONAB5.785e-3252.55Glycerol-3-phosphate dehydrogenase [NAD+], cytopla... [more]
GPD1L_PONAB9.868e-3251.09Glycerol-3-phosphate dehydrogenase 1-like protein ... [more]
GPD1L_HUMAN1.289e-3151.09Glycerol-3-phosphate dehydrogenase 1-like protein ... [more]
GPD1L_MOUSE1.683e-3151.09Glycerol-3-phosphate dehydrogenase 1-like protein ... [more]
GPDA_DROPS2.871e-3150.00Glycerol-3-phosphate dehydrogenase [NAD+], cytopla... [more]
GPD1L_XENLA6.396e-3152.14Glycerol-3-phosphate dehydrogenase 1-like protein ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003B08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884393 ID=CV884393; Name=CV884393; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTTTTCCAAAAAAAAACACTTTTGAATATCTAAAACAA
TGCAAAAACAGAAAATACTAGTAGTAAAAGCTTTTGAAGGCTAAAGGCAT
CTCTGAAGCTTGAAGGTTCCTGACACCCTGCATTTTCAGTTCCTTTGATC
GATCTCACTGTTACGGCAACTGATTTTGCATGAGTTAATTACCACCCAAA
AGTTTGTCTAGGCTTTGCTTCTGTTCATGCTGCACAACTTAAAAAAAGTT
TACTTTCAAAACTGTACCTCAAATACGTGAAATATATTACTTCTATCTGG
GGGAAGAGTCAGTAGTACTGAGTAAAGCCTTCCAGTAAAAACAATCTGGG
TTTGCCCTCACTGTACTCAACTATGGCTGACGGGGGGAAATGCCCAACGC
AAATCTCATGCACTGTTGCAAAAAGCGGAAACAGCTCTAGCCATCCACGG
GGGCTTAGCACTTCATAAACTTCTCTTGCAGTTGAAACTCCCTGTAATTT
CTGGCCCTGAAGCATCTCTGCTTCTAAATCATCAAAAGACCTTTTCCCTT
CGTTCTTAGCAAAAGCCTCGGCAACTTTTCTGTTTCTTCCTCCCAAGCAT
GTTGTGATGAGATCAGCTACCCCACAGCTCTCAAAGAAGGTGCTGTCCTT
AACAAATGAAAACAACAACTTGGAAAAGGCTCTCATCTCTCTGAAACCAA
TTCTCATTATTGCAGCCTTAGTGTTATTTCCCATTTCAAGGCCATCAACG
AAACC
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