CV884393

Overview
NameCV884393
Unique NameCV884393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPD1L_XENTR (Glycerol-3-phosphate dehydrogenase 1-like protein OS=Xenopus tropicalis GN=gpd1l PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.175e-30
Identity = 69/137 (50.36%), Postives = 90/137 (65.69%), Query Frame = -1
Query:  348 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSF-VKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSEGKP 755
            GF DGL  G+NTKAA++R+G  EM AF+ +     V  +TF ESCGVADLITTC GGRNRKV+EAF K+   +S ++LE EML GQKLQG  T+ EVY +L  +  +  FPLF  V++IC    P   ++   +  P
Sbjct:  215 GFCDGLGCGDNTKAAVIRLGLMEMIAFANVFCKGPVSIATFLESCGVADLITTCYGGRNRKVSEAFVKSG--KSIEELEKEMLNGQKLQGPQTSAEVYRILQQKNMVNKFPLFTAVYQICYEGKPVEDVISCLQSHP 349          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPDH2_CAEEL (Probable glycerol-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans GN=gpdh-2 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 7.819e-29
Identity = 66/136 (48.53%), Postives = 83/136 (61.03%), Query Frame = -1
Query:  348 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSFVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSEGKP 755
            GF DGL  G+NTKAA++R+G  E   F +  +      TFFESCG+ADLITTC GGRNRKV EAF K    +S  ++E E+L GQ  QG  TA EVY ++   G    FPLF  VH+IC G   P+ +V+     P
Sbjct:  256 GFTDGLGYGDNTKAAVIRLGLMETTKFVEHYYPGSNLQTFFESCGIADLITTCYGGRNRKVCEAFVKT--GKSMAEVEKELLNGQSAQGPLTAEEVYLMMHKTGLDAKFPLFTAVHKICAGEMKPAELVDCLRNHP 389          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPD2_SCHPO (Glycerol-3-phosphate dehydrogenase [NAD+] 2 OS=Schizosaccharomyces pombe GN=gpd2 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.881e-28
Identity = 64/130 (49.23%), Postives = 85/130 (65.38%), Query Frame = -1
Query:  366 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSFVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVE 755
            G +DGLE+G+NTK+A+MRIG  EM+ F ++ F     +   ESCG+ADLITTCLGGRN K A AF K    +    +E E+L GQKLQG +TA+EVYE L  +  +  FPLF  V+ I     PP+ ++E
Sbjct:  244 GIIDGLELGDNTKSAVMRIGLLEMQKFGRMFFDCKPLTMSEESCGIADLITTCLGGRNHKCAVAFVKT--GKPMHVVEQELLDGQKLQGAATAKEVYEFLDNQNKVSEFPLFTAVYRIVYEGLPPNKLLE 371          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPD1_SCHPO (Glycerol-3-phosphate dehydrogenase [NAD+] 1 OS=Schizosaccharomyces pombe GN=gpd1 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.946e-25
Identity = 59/129 (45.74%), Postives = 81/129 (62.79%), Query Frame = -1
Query:  369 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSFVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIV 755
            GF DGLE G NTKAAIMR G  EM+ F+   F     +   +SCG+ADL+T+CLGGRN + AEAF K    +S + LE E+L GQ LQG +T+++V+E L  +  ++ FPLF  V+ I      P  ++
Sbjct:  240 GFADGLEWGGNTKAAIMRRGLLEMQKFATTFFDSDPRTMVEQSCGIADLVTSCLGGRNNRCAEAFVKT--GKSLETLEKELLGGQLLQGAATSKDVHEFLLTKDMVKDFPLFTAVYNISYEDMDPKDLI 366          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPD1_YEAST (Glycerol-3-phosphate dehydrogenase [NAD+] 1 OS=Saccharomyces cerevisiae GN=GPD1 PE=1 SV=4)

HSP 1 Score: 105.916 bits (263), Expect = 2.436e-22
Identity = 59/125 (47.20%), Postives = 81/125 (64.80%), Query Frame = -1
Query:  384 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSFVKDSTFF-ESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFP 755
            GFV+GL  GNN  AAI R+G  E+  F ++ F   ++ T++ ES GVADLITTC GGRN KVA   A + GK +++  E E+L GQ  QG+ T +EV+E L   G +E FPLF  V++I   ++P
Sbjct:  253 GFVEGLGWGNNASAAIQRVGLGEIIRFGQMFFPESREETYYQESAGVADLITTCAGGRNVKVARLMATS-GKDAWE-CEKELLNGQSAQGLITCKEVHEWLETCGSVEDFPLFEAVYQIVYNNYP 375          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPD1_SACBA (Glycerol-3-phosphate dehydrogenase [NAD+] 1 OS=Saccharomyces bayanus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.436e-22
Identity = 59/125 (47.20%), Postives = 81/125 (64.80%), Query Frame = -1
Query:  384 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSFVKDSTFF-ESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFP 755
            GFV+GL  GNN  AAI R+G  E+  F ++ F   ++ T++ ES GVADLITTC GGRN KVA   A + GK +++  E E+L GQ  QG+ T +EV+E L   G +E FPLF  V++I   ++P
Sbjct:  253 GFVEGLGWGNNASAAIQRVGLGEIIRFGQMFFPESREETYYQESAGVADLITTCAGGRNVKVARLMATS-GKDAWE-CEKELLNGQSAQGLITCKEVHEWLETCGSVEDFPLFEAVYQIVYNNYP 375          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPD_ASHGO (Glycerol-3-phosphate dehydrogenase [NAD+] OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.427e-22
Identity = 61/134 (45.52%), Postives = 80/134 (59.70%), Query Frame = -1
Query:  357 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSFVKDSTFF-ESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSE 755
            GFV GL  GNN  AA+ R+G  EM  F+++ F   K  TF+ ES GVADLITTC GGRN ++  A A  E  +S  +LE E+L GQ  QG+ T +EV+E L   G  + FPLF  V++I     P S + +  E
Sbjct:  291 GFVLGLGWGNNAAAAVQRVGLSEMIKFARMFFPESKVETFYQESAGVADLITTCAGGRNVRIGRAMA--ETGKSAQELEKELLNGQSSQGIYTTQEVHEWLQQCGKKDEFPLFEAVYKIVYEGVPMSKLPDMLE 422          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPD2_CANGA (Glycerol-3-phosphate dehydrogenase [NAD+] 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.427e-22
Identity = 62/134 (46.27%), Postives = 80/134 (59.70%), Query Frame = -1
Query:  357 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSFVKDSTFF-ESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSE 755
            GFV+GL  GNN  AAI R+G  E+  F ++ F   +  T++ ES GVADLITTC GGRN +VA   AK    +S +D E E+L GQ  QGV T +EV+E LS    +E FPLF  V++I     P   + E  E
Sbjct:  281 GFVEGLGWGNNAAAAIQRVGLGEIIKFGQMFFPESRVETYYQESAGVADLITTCSGGRNVRVATHMAKTG--KSAEDSEKELLNGQSAQGVITCKEVHEWLSTCEMIEEFPLFEAVYKIVYEDVPMHKLPEMIE 412          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPD_PICAN (Glycerol-3-phosphate dehydrogenase [NAD+] OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.579e-21
Identity = 59/134 (44.03%), Postives = 80/134 (59.70%), Query Frame = -1
Query:  357 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSFVKDSTF-FESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSE 755
            GFV+GL  G+N K+A+MRIG  EM  F+ + F   + +TF  ES GVAD+ITTC GGRN +V    A  E K S  + E  +L GQ  QG+ T REVYE+L+ +  ++ FPLF   ++I     P   + E  E
Sbjct:  246 GFVEGLGWGDNAKSAVMRIGLVEMIKFAHMFFEDCQSTTFTHESAGVADIITTCAGGRNVRVGRYMA--EHKVSGFEAEKVLLNGQSCQGLHTTREVYELLAAKNVIDEFPLFKATYQIIYEGLPMEKLPELLE 377          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPD2_ZYGRO (Glycerol-3-phosphate dehydrogenase [NAD+] 2 OS=Zygosaccharomyces rouxii GN=GPD2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.518e-21
Identity = 61/135 (45.19%), Postives = 81/135 (60.00%), Query Frame = -1
Query:  366 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSFVKDSTFF-ESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFP----PSAIVE 755
            GFV GL  GNN  AAI R+G  E+  F ++ F   K  T++ ES GVADLITTC GGRN +VA   AK    +S + +E ++L GQ  QG+ TA+EV++ L   G  E +PLF  V++I   + P    PS I E
Sbjct:  252 GFVTGLGWGNNAAAAIQRVGLGEIIKFGRMFFPESKVETYYQESAGVADLITTCSGGRNVRVATEMAKTG--KSGEQVEKDILNGQSAQGLITAKEVHQWLESSGHTEEYPLFEAVYQITYENVPMKELPSMIEE 384          
The following BLAST results are available for this feature:
BLAST of CV884393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
GPD1L_XENTR3.175e-3050.36Glycerol-3-phosphate dehydrogenase 1-like protein ... [more]
GPDH2_CAEEL7.819e-2948.53Probable glycerol-3-phosphate dehydrogenase 2 OS=C... [more]
GPD2_SCHPO3.881e-2849.23Glycerol-3-phosphate dehydrogenase [NAD+] 2 OS=Sch... [more]
GPD1_SCHPO8.946e-2545.74Glycerol-3-phosphate dehydrogenase [NAD+] 1 OS=Sch... [more]
GPD1_YEAST2.436e-2247.20Glycerol-3-phosphate dehydrogenase [NAD+] 1 OS=Sac... [more]
GPD1_SACBA2.436e-2247.20Glycerol-3-phosphate dehydrogenase [NAD+] 1 OS=Sac... [more]
GPD_ASHGO5.427e-2245.52Glycerol-3-phosphate dehydrogenase [NAD+] OS=Ashby... [more]
GPD2_CANGA5.427e-2246.27Glycerol-3-phosphate dehydrogenase [NAD+] 2 OS=Can... [more]
GPD_PICAN1.579e-2144.03Glycerol-3-phosphate dehydrogenase [NAD+] OS=Pichi... [more]
GPD2_ZYGRO3.518e-2145.19Glycerol-3-phosphate dehydrogenase [NAD+] 2 OS=Zyg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003B08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884393 ID=CV884393; Name=CV884393; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTTTTCCAAAAAAAAACACTTTTGAATATCTAAAACAA
TGCAAAAACAGAAAATACTAGTAGTAAAAGCTTTTGAAGGCTAAAGGCAT
CTCTGAAGCTTGAAGGTTCCTGACACCCTGCATTTTCAGTTCCTTTGATC
GATCTCACTGTTACGGCAACTGATTTTGCATGAGTTAATTACCACCCAAA
AGTTTGTCTAGGCTTTGCTTCTGTTCATGCTGCACAACTTAAAAAAAGTT
TACTTTCAAAACTGTACCTCAAATACGTGAAATATATTACTTCTATCTGG
GGGAAGAGTCAGTAGTACTGAGTAAAGCCTTCCAGTAAAAACAATCTGGG
TTTGCCCTCACTGTACTCAACTATGGCTGACGGGGGGAAATGCCCAACGC
AAATCTCATGCACTGTTGCAAAAAGCGGAAACAGCTCTAGCCATCCACGG
GGGCTTAGCACTTCATAAACTTCTCTTGCAGTTGAAACTCCCTGTAATTT
CTGGCCCTGAAGCATCTCTGCTTCTAAATCATCAAAAGACCTTTTCCCTT
CGTTCTTAGCAAAAGCCTCGGCAACTTTTCTGTTTCTTCCTCCCAAGCAT
GTTGTGATGAGATCAGCTACCCCACAGCTCTCAAAGAAGGTGCTGTCCTT
AACAAATGAAAACAACAACTTGGAAAAGGCTCTCATCTCTCTGAAACCAA
TTCTCATTATTGCAGCCTTAGTGTTATTTCCCATTTCAAGGCCATCAACG
AAACC
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