CV884387

Overview
NameCV884387
Unique NameCV884387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length973
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884387 vs. ExPASy Swiss-Prot
Match: DYR1A_XENTR (Dual specificity tyrosine-phosphorylation-regulated kinase 1A OS=Xenopus tropicalis GN=dyrk1a PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.341e-15
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = -1
Query:  719 LKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTP 961
            +KI DFGS+  L  G+    YI SR+YR+PE++ G   Y  AIDMWS+GC+L E+  G+PLF G + VDQ+ +I+++LG P
Sbjct:  295 IKIVDFGSSCQL--GQRIYQYIQSRFYRSPEVLLGMP-YDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMSKIVEVLGIP 372          
BLAST of CV884387 vs. ExPASy Swiss-Prot
Match: YRL5_CAEEL (Putative serine/threonine-protein kinase R03D7.5 OS=Caenorhabditis elegans GN=R03D7.5 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.587e-15
Identity = 61/209 (29.19%), Postives = 93/209 (44.50%), Query Frame = -1
Query:  458 QLKICDFGSAKMLVPGEPNIS-YICSRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIKCM----------------------NPNYTEFKFPQ--------IKAHPWHKIFHKRMPP--------EALDLVSRLLQYSPSLRCTALEACAHPFFDDLR-DPNTCLPNGRPLPTLFNFT 964
            +LK+ DFG+A+ L   E   S Y  +R+YR PEL+FG  ++T +ID+WS  CV  EL   + LF G+   DQ+V I  + G PT ++IK +                        N T+ +  Q         +A    +    ++ P        E  D +   L+  P  R +A++    P FD LR  P     NG  +P L ++T
Sbjct:  167 RLKLADFGNARRLETNEKTGSAYQVTRFYRPPELLFGCEKFTASIDIWSATCVAFELFANRVLFKGKDTKDQIVLITGVFGYPTDDDIKSIGVKRPRVARKDARGIETVKIKEKTNKTKKEAKQSTLVHEKYTRARAMSRSTENKLAPFTSKMLDSEIYDFMKATLKIDPKKRKSAIDVLKMPLFDILRSSPPKKRSNGVEMPNLASYT 375          
BLAST of CV884387 vs. ExPASy Swiss-Prot
Match: CDKF1_ARATH (Cyclin-dependent kinase F-1 OS=Arabidopsis thaliana GN=CDKF-1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.587e-15
Identity = 42/122 (34.43%), Postives = 73/122 (59.84%), Query Frame = -1
Query:  548 SYICSRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEI--KCMN-PNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALE 904
            S + +R++R PEL++G+T Y   +D+WS+GCV AELL  +PLFPG S +DQ+  +  +LG    EE+   C++ P+Y    F ++++    +        + + L+ +L+ Y P+ R T +E
Sbjct:  291 SCVGTRWFRPPELLYGSTMYGLEVDLWSLGCVFAELLSLEPLFPGISDIDQISRVTNVLGN-LNEEVWPGCVDLPDYKSISFAKVESPLGIEGCLPNHSGDVISLLKKLICYDPASRATTME 411          
BLAST of CV884387 vs. ExPASy Swiss-Prot
Match: MK04_HUMAN (Mitogen-activated protein kinase 4 OS=Homo sapiens GN=MAPK4 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 2.136e-14
Identity = 48/158 (30.38%), Postives = 86/158 (54.43%), Query Frame = -1
Query:  509 LKICDFGSAKMLVPGEPNISYIC----SRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQ---LVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDP 961
            LKI DFG A+++     +  Y+     +++YR+P L+     YT AIDMW+ GC+LAE+L G+ LF G   ++Q   ++E I ++    ++E+  + P++    + ++K  P  K+    +  EA+D + ++L ++P  R TA     HP+      P
Sbjct:  164 LKIGDFGLARIVDQHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCILAEMLTGRMLFAGAHELEQMQLILETIPVIREEDKDELLRVMPSFVSSTW-EVK-RPLRKLL-PEVNSEAIDFLEKILTFNPMDRLTAEMGLQHPYMSPYSCP 318          
BLAST of CV884387 vs. ExPASy Swiss-Prot
Match: BUR1_NEUCR (Serine/threonine-protein kinase bur-1 OS=Neurospora crassa GN=bur-1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.136e-14
Identity = 59/177 (33.33%), Postives = 86/177 (48.59%), Query Frame = -1
Query:  482 LKICDFGSAK-----MLVPGEPN-------ISYICSRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQI---KAHPWH--KIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDPNTCLPNGRP 961
            L+I DFG A+     +  PG+ +        S + +R+YR PEL+     YTTAIDMW +GCV AE+L G+P+  GES + QL  +  + GTP+ E +    P +      Q    K  P +  + F K   P  + L+  L +     R  A++A  HP+F     P   LP   P
Sbjct:  171 LQIADFGLARHYEGDIPQPGKGSGEGKRDYTSLVVTRWYRPPELLMHLKRYTTAIDMWGVGCVFAEMLEGKPVLQGESDLHQLELVWDLCGTPSEETM----PGWRTLPGGQAFSSKPRPGNLARRFEKH-GPVVISLLKELFKLDWRSRINAIDALNHPYFRTA--PLPALPGDLP 340          
BLAST of CV884387 vs. ExPASy Swiss-Prot
Match: BUR1_DEBHA (Serine/threonine-protein kinase BUR1 OS=Debaryomyces hansenii GN=BUR1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.136e-14
Identity = 54/160 (33.75%), Postives = 75/160 (46.88%), Query Frame = -1
Query:  527 LKICDFGSAK---------MLVPGEPNISY---ICSRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTR---EEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFF 961
            LKI DFG A+         M  PG    +Y   + +R+YR PEL+ G   YTTA+DMW IGCV  EL   +P+  G++   Q   I  ++G P      E   + PN  +              F   M P+ ++L+S LL   P  R  AL+A  H +F
Sbjct:  188 LKIADFGLARVYHGSPPKFMSGPGGGERAYTGLVVTRWYRPPELLLGERRYTTAVDMWGIGCVFGELFTRKPILVGKTDSHQAQLIFDLVGPPNSISWSEATSL-PNKHDLNIGLTCQRSLESKFAPLMNPDGINLLSGLLTLDPYKRFNALDALNHNYF 346          
BLAST of CV884387 vs. ExPASy Swiss-Prot
Match: DYRK2_DICDI (Probable serine/threonine-protein kinase dyrk2 OS=Dictyostelium discoideum GN=dyrk2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.789e-14
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = -1
Query:  704 LKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEI 961
            +K+ DFGS+      E   +YI SR+YR+PE+I G T+Y  +ID+WS+GC+L E+  G PLFPG    +QL  I+++LG P +  I
Sbjct:  747 IKLIDFGSS--CFENEQIFTYIQSRFYRSPEVILG-TKYDKSIDIWSLGCILVEIFTGVPLFPGSDEPEQLACIMEVLGAPPKSVI 829          
BLAST of CV884387 vs. ExPASy Swiss-Prot
Match: MK04_MOUSE (Mitogen-activated protein kinase 4 OS=Mus musculus GN=Mapk4 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.758e-14
Identity = 48/158 (30.38%), Postives = 86/158 (54.43%), Query Frame = -1
Query:  509 LKICDFGSAKMLVPGEPNISYIC----SRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQ---LVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEALDLVSRLLQYSPSLRCTALEACAHPFFDDLRDP 961
            LKI DFG A+++     +  Y+     +++YR+P L+     YT AIDMW+ GC+LAE+L G+ LF G   ++Q   +++ I ++    +EE+  + P++    + ++K  P  K+    +  EA+D + ++L ++P  R TA     HP+      P
Sbjct:  164 LKIGDFGLARIVDQHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCILAEMLTGKMLFAGAHELEQMQLILDTIPVVREEDKEELLRVMPSFVSSTW-EVK-RPLRKLL-PDVNSEAIDFLEKILTFNPMDRLTAEMGLQHPYMSPYSCP 318          
BLAST of CV884387 vs. ExPASy Swiss-Prot
Match: HIPK2_MOUSE (Homeodomain-interacting protein kinase 2 OS=Mus musculus GN=Hipk2 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 6.214e-14
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = -1
Query:  719 HQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTP 967
            +++K+ DFGSA  +     + +Y+ SRYYRAPE+I G   +  AIDMWS+GCV+AEL LG PL+PG S  DQ+  I +  G P
Sbjct:  340 YRVKVIDFGSASHVSKAVCS-TYLQSRYYRAPEIILGLP-FCEAIDMWSLGCVIAELFLGWPLYPGASEYDQIRYISQTQGLP 420          
BLAST of CV884387 vs. ExPASy Swiss-Prot
Match: HIPK2_MESAU (Homeodomain-interacting protein kinase 2 OS=Mesocricetus auratus GN=Hipk2 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 6.214e-14
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = -1
Query:  719 HQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDMWSIGCVLAELLLGQPLFPGESGVDQLVEIIKILGTP 967
            +++K+ DFGSA  +     + +Y+ SRYYRAPE+I G   +  AIDMWS+GCV+AEL LG PL+PG S  DQ+  I +  G P
Sbjct:  340 YRVKVIDFGSASHVSKAVCS-TYLQSRYYRAPEIILGLP-FCEAIDMWSLGCVIAELFLGWPLYPGASEYDQIRYISQTQGLP 420          
The following BLAST results are available for this feature:
BLAST of CV884387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DYR1A_XENTR7.341e-1549.38Dual specificity tyrosine-phosphorylation-regulate... [more]
YRL5_CAEEL9.587e-1529.19Putative serine/threonine-protein kinase R03D7.5 O... [more]
CDKF1_ARATH9.587e-1534.43Cyclin-dependent kinase F-1 OS=Arabidopsis thalian... [more]
MK04_HUMAN2.136e-1430.38Mitogen-activated protein kinase 4 OS=Homo sapiens... [more]
BUR1_NEUCR2.136e-1433.33Serine/threonine-protein kinase bur-1 OS=Neurospor... [more]
BUR1_DEBHA2.136e-1433.75Serine/threonine-protein kinase BUR1 OS=Debaryomyc... [more]
DYRK2_DICDI2.789e-1445.35Probable serine/threonine-protein kinase dyrk2 OS=... [more]
MK04_MOUSE4.758e-1430.38Mitogen-activated protein kinase 4 OS=Mus musculus... [more]
HIPK2_MOUSE6.214e-1449.40Homeodomain-interacting protein kinase 2 OS=Mus mu... [more]
HIPK2_MESAU6.214e-1449.40Homeodomain-interacting protein kinase 2 OS=Mesocr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_003B04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884387 ID=CV884387; Name=CV884387; organism=Citrus sinensis; type=EST; length=973bp
TCTCCTCTACTGGTGCATATAATTTCTTTTAAGCAACATGTTCCAAAATA
TTAGTACAATAGAGTTGCCAAAGTAATGAAGACTGGATTTCAGTTTACCG
TCCAGCACAGCCGCAGACAACTTGGGTATTACGGTTCTTGCTGAGAAACT
TGCCATTTTGTGGATGGATTTCATACATGGATCATAAGATTTTCATTCCT
TCTTCCATCCACAACTCACTCCCATCAGCAGATTCATCATAAAAATCCTT
GAGCAGCCTCCCAGCCACGAACCAACTCATTGGTGAAGGGAAAAAAATCG
GTTGCCCTGTAGGGCACAATGGCTTGTGGCATACCTAAGCATCCAAAAAT
TGATTTATATTGCATATGGATCCATCTCAGTCATCAAATCATTTCCTTGC
GTGCTCCGGGATAAGACGTTGTCGCAATTCATTAGAGGCACCAGCCAATT
CTTGAGCAGTGAAATTGAAAAGAGTAGGTAGGGGTCGCCCATTTGGCAAA
CAAGTATTGGGGTCTCTCAAATCATCAAAGAAGGGGTGTGCACATGCCTC
CAAAGCAGTGCATCGTAGGCTTGGTGAATACTGAAGCAACCTTGAGACAA
GATCCAGTGCTTCAGGGGGCATTCGTTTGTGAAATATCTTATGCCATGGA
TGAGCTTTAATTTGAGGGAACTTAAATTCTGTGTAATTTGGATTCATGCA
CTTAATTTCTTCTCTTGTTGGTGTTCCCAGAATCTTAATGATTTCGACGA
GCTGGTCAACTCCACTTTCCCCAGGAAATAAAGGCTGTCCAAGAAGAAGC
TCAGCCAAGACACATCCAATGGACCACATATCAATGGCAGTTGTGTATTC
TGTAGCCCCAAATATAAGTTCCGGGGCCCTGTAATATCTTGAGCAGATAT
ACGATATGTTGGGTTCACCTGGCACCAACATCTTTGCACTTCCAAAGTCA
CATATCTTTAACTGGTGTGTATG
back to top