CV884374

Overview
NameCV884374
Unique NameCV884374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CYSP2_LEIPI (Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.191e-12
Identity = 31/75 (41.33%), Postives = 44/75 (58.67%), Query Frame = -1
Query:  633 NQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTL 857
            N P+++A++    +F  Y+SG+ T   G  L+HGV  VGY       YW++KNSWG  WGE GY+R+   V   L
Sbjct:  259 NGPIAIALDAS--SFMSYKSGVLTACIGKQLNHGVLLVGYDMTGEVPYWVIKNSWGGDWGEQGYVRVVMGVNACL 331          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CPP2_ENTHI (Cysteine proteinase 2 OS=Entamoeba histolytica GN=CPP2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.862e-12
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = -1
Query:  630 AVANQPVSVAIEGGGMAFQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRM--ERNVAGTLT 866
            A++   V V+I+     FQLY+SG +T  +C  +   L+H V AVGYG  +G + WIV+NSWG+ WG+ GYI M  E N  G  T
Sbjct:  220 ALSQGLVDVSIDASSAKFQLYKSGAYTDTKCKNNYFALNHEVCAVGYGVVDGKECWIVRNSWGTGWGDKGYINMVIEGNTCGVAT 304          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CATV_NPVST (Viral cathepsin OS=Spodoptera litura multicapsid nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.738e-12
Identity = 39/84 (46.43%), Postives = 47/84 (55.95%), Query Frame = -1
Query:  606 NQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 857
            N P++VAI+   +    Y SGI T      L+H V  VGYG EN   YWI KNSWGS+WGE GY R  RN+       CG+  E
Sbjct:  253 NGPIAVAIDCVDIID--YRSGIATVCNDNGLNHAVLLVGYGIENDTPYWIFKNSWGSNWGENGYFRARRNI-----NACGMLNE 329          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CATV_NPVAH (Viral cathepsin OS=Adoxophyes honmai nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.738e-12
Identity = 32/69 (46.38%), Postives = 43/69 (62.32%), Query Frame = -1
Query:  645 PVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNV 851
            P+++AI+   ++   Y  GI        L+H V  VGYGTE G  YW +KNSWGS WGE GY R++RN+
Sbjct:  255 PIAMAIDAASIS--TYSKGIIHFCENLGLNHAVLLVGYGTEGGVSYWTLKNSWGSDWGEDGYFRVKRNI 321          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CATV_NPVEP (Viral cathepsin OS=Epiphyas postvittana nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.882e-12
Identity = 35/82 (42.68%), Postives = 46/82 (56.10%), Query Frame = -1
Query:  606 PVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 851
            P+ VAI+   +    YE GI        L+H V  VGYG EN   YWI+KNSWG+ WGE G+ ++++NV       CGI  E
Sbjct:  241 PIPVAIDASDILN--YEQGIIKYCANNGLNHAVLLVGYGVENNVPYWILKNSWGTDWGEQGFFKIQQNV-----NACGIKNE 315          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: ACP2_ENTHI (Cysteine proteinase ACP2 (Fragment) OS=Entamoeba histolytica GN=ACP2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.882e-12
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = -1
Query:  630 AVANQPVSVAIEGGGMAFQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRM--ERNVAGTLT 866
            A++   + V+I+     FQLY+SG +T  +C  +   L+H V AVGYG  +G + WIV+NSWG+SWG+ GYI M  E N  G  T
Sbjct:  215 ALSQGLLDVSIDVSSAKFQLYKSGAYTDTKCKNNYFALNHEVCAVGYGVVDGKECWIVRNSWGTSWGDKGYINMVIEGNTCGVAT 299          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CPP3_ENTHI (Cysteine proteinase 3 (Fragment) OS=Entamoeba histolytica GN=CPNP PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.327e-12
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = -1
Query:  630 AVANQPVSVAIEGGGMAFQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRM--ERNVAGTLT 866
            A++   V V+I+     FQLY+SG ++  +C  +   L+H V AVGYG  +G + WIV+NSWG+ WG+ GYI M  E N  G  T
Sbjct:  213 ALSQGLVDVSIDASSAKFQLYKSGAYSDTKCKNNFFALNHEVCAVGYGVVDGKECWIVRNSWGTGWGDKGYINMVIEGNTCGVAT 297          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.327e-12
Identity = 40/89 (44.94%), Postives = 48/89 (53.93%), Query Frame = -1
Query:  597 PVSVAIEGGGMAFQLYESGIFTG----RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 851
            PVS A E     F +Y  GI++     +    ++H V AVGYG ENG  YWIVKNSWG  WG  GY  +ER         CG+A  ASY
Sbjct:  248 PVSFAFEVTN-DFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERG-----KNMCGLAACASY 330          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CYSP_TRYBB (Cysteine proteinase OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.088e-11
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = -1
Query:  651 NQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMER 857
            N P+++A++    +F  Y  GI T      LDHGV  VGY   +   YWI+KNSW + WGE GYIR+E+
Sbjct:  257 NGPLAIAVDAE--SFMDYNGGILTSCTSKQLDHGVLLVGYNDNSNPPYWIIKNSWSNMWGEDGYIRIEK 323          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CYSP2_DICDI (Cysteine proteinase 2 OS=Dictyostelium discoideum GN=cprB PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.088e-11
Identity = 47/124 (37.90%), Postives = 56/124 (45.16%), Query Frame = -1
Query:  597 PVSVAIEGGGMAFQLYESGIF-TGRCG-TSLDHGVTAVGYGTENGAD-------------------------------------YWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 851
            PVSVAI+    +FQLY SGI+   +C  T LDHGV  VGYG +   D                                     YWIVKNSWG+SWG  GYI M ++        CGIA  +SY
Sbjct:  254 PVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKD----RKNNCGIASVSSY 373          
The following BLAST results are available for this feature:
BLAST of CV884374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
CYSP2_LEIPI2.191e-1241.33Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS... [more]
CPP2_ENTHI2.862e-1244.71Cysteine proteinase 2 OS=Entamoeba histolytica GN=... [more]
CATV_NPVST3.738e-1246.43Viral cathepsin OS=Spodoptera litura multicapsid n... [more]
CATV_NPVAH3.738e-1246.38Viral cathepsin OS=Adoxophyes honmai nucleopolyhed... [more]
CATV_NPVEP4.882e-1242.68Viral cathepsin OS=Epiphyas postvittana nucleopoly... [more]
ACP2_ENTHI4.882e-1244.71Cysteine proteinase ACP2 (Fragment) OS=Entamoeba h... [more]
CPP3_ENTHI8.327e-1243.53Cysteine proteinase 3 (Fragment) OS=Entamoeba hist... [more]
CATH_PIG8.327e-1244.94Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
CYSP_TRYBB1.088e-1144.93Cysteine proteinase OS=Trypanosoma brucei brucei P... [more]
CYSP2_DICDI1.088e-1137.90Cysteine proteinase 2 OS=Dictyostelium discoideum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003A07_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884374 ID=CV884374; Name=CV884374; organism=Citrus sinensis; type=EST; length=869bp
CCTCGTGCCGATAGATAACAACAATTTGTTTGTGCATTGTTCAGATTCAA
CGCAGATAGATAACTTACAACGCTATATACCAAACCAACGTCCGAATAAA
TATTTAACAGACCATCCACCTGCCGGTACATTAACGTTTGGAATGAAATG
CAGTAGAATGAACTAAGGCCGGGGAGAAACTCATTCACAAGCACGAATAT
TTTCATCCTCCCTTCGGCCTTCCACTGCTCTTACAGTGCCAACTATAATT
AAGCACTGCTACTTCCACCTTGATTTCCATGAGCCCAGTAAGGTTTAGCA
GGGGTGCGTCGTAATGCCCTCACTCCCAATGGGTTGTCCTTGCTCATCAA
GCAGGTCCCAGCACGAACATTACAGATGGGATAGTCATGTGGGCAGCAGC
TATAGTGGTCATCACAGCAGGTGGCAGCCTCAAGCGGGCAGCATCCCCAT
GCAAAGCAAGAGTTACCATACTCAAAGACACAGCAGCAAGTGTTGCTCTC
AGGGCAAGAGTAATAATTGTCACACACAGCAGGAGGCTTTGTTGGAGATG
GAGGGGACGGTCCAGGGTTGGGAGGATTTTGGCCTTTCTTTATGGGATAT
GAGGCCTCCATGGCAATTCCACACTTGCCCGTGAGAGTGCCAGCCACGTT
ACGCTCCATCCTAATATAGCCAGCCTCTCCCCAGCTACTGCCCCATGAAT
TCTTCACAATCCAGTAATCAGCTCCATTTTCTGTGCCATATCCAACAGCA
GTAACACCATGGTCCAGAGATGTCCCACATCTTCCCGTAAATATACCCGA
TTCATATAACTGGAATGCCATGCCACCTCCCTCAATGGCAACACTCACGG
GTTGATTTGCAACTGCCTT
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