EY665267

Overview
NameEY665267
Unique NameEY665267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1077
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: GBRAP_BOVIN (Gamma-aminobutyric acid receptor-associated protein OS=Bos taurus GN=GABARAP PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 5.855e-24
Identity = 51/112 (45.54%), Postives = 74/112 (66.07%), Query Frame = 3
Query:   78 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPHTATLLDSVYESFKDEDGFLYMCYSSEKTFG 413
            +K+E  FE+R  E  +I  KYPDRVPVI E+  KA + D++KKK+LVP D++VGQF  ++  R+HL    ALF FV + +P T+  +  +Y+   +ED FLY+ YS E  +G
Sbjct:    5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.225e-23
Identity = 58/122 (47.54%), Postives = 82/122 (67.21%), Query Frame = 3
Query:   72 QSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPG-----KALFVFV-KDTLPHTATLLDSVYESFKDEDGFLYMCYSSEKTFGYD 419
            +SFK E++ E+R   S +I  +Y DR+P+I ER + +D+PD+ KKKFL P +M +  F  I+  R HL        KA+F+FV K+ LP ++ LL S+Y++ KDEDGFLY+CYS E TFG D
Sbjct:    6 KSFKQEYSLEKRKLISSKIRNRYKDRLPIIVERAANSDVPDINKKKFLAPSNMVITNF--IMEIRKHLDDSDHNEQKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTFGSD 125          
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: MLP3B_HUMAN (Microtubule-associated proteins 1A/1B light chain 3B OS=Homo sapiens GN=MAP1LC3B PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 3.007e-20
Identity = 53/120 (44.17%), Postives = 78/120 (65.00%), Query Frame = 3
Query:   60 MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPHTATLLDSVYESFKDEDGFLYMCYSSEKTFG 413
            M   ++FK   TFEQR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + I I+  RL L   +A F+ V   ++   +T +  VYES KDEDGFLYM Y+S++TFG
Sbjct:    1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120          
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: MLP3B_BOVIN (Microtubule-associated proteins 1A/1B light chain 3B OS=Bos taurus GN=MAP1LC3B PE=1 SV=4)

HSP 1 Score: 98.5969 bits (244), Expect = 6.699e-20
Identity = 53/120 (44.17%), Postives = 78/120 (65.00%), Query Frame = 3
Query:   60 MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPHTATLLDSVYESFKDEDGFLYMCYSSEKTFG 413
            M   ++FK   TFEQR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + I I+  RL L   +A F+ V   ++   +T +  VYES KDEDGFLYM Y+S++TFG
Sbjct:    1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 120          
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: MLP3B_RAT (Microtubule-associated proteins 1A/1B light chain 3B OS=Rattus norvegicus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.949e-19
Identity = 51/120 (42.50%), Postives = 78/120 (65.00%), Query Frame = 3
Query:   60 MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPHTATLLDSVYESFKDEDGFLYMCYSSEKTFG 413
            M   ++FK   +FEQR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + I I+  RL L   +A F+ V   ++   +T +  VYES +DEDGFLYM Y+S++TFG
Sbjct:    1 MPSEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120          
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: MLP3B_MOUSE (Microtubule-associated proteins 1A/1B light chain 3B OS=Mus musculus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.949e-19
Identity = 51/120 (42.50%), Postives = 78/120 (65.00%), Query Frame = 3
Query:   60 MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPHTATLLDSVYESFKDEDGFLYMCYSSEKTFG 413
            M   ++FK   +FEQR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + I I+  RL L   +A F+ V   ++   +T +  VYES +DEDGFLYM Y+S++TFG
Sbjct:    1 MPSEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120          
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: MP3B2_HUMAN (Microtubule-associated proteins 1A/1B light chain 3 beta 2 OS=Homo sapiens GN=MAP1LC3B2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.325e-19
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = 3
Query:   60 MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPHTATLLDSVYESFKDEDGFLYMCYSSEKTFG 413
            M   ++FK   TFEQR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + I I+  RL L   +A F+ V   ++   +T +  VYES KDEDGFLYM  +S++TFG
Sbjct:    1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120          
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: MLP3A_BOVIN (Microtubule-associated proteins 1A/1B light chain 3A OS=Bos taurus GN=MAP1LC3A PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.815e-18
Identity = 46/115 (40.00%), Postives = 74/115 (64.35%), Query Frame = 3
Query:   78 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPHTATLLDSVYESFKDEDGFLYMCYSSEKTFGY 416
            FK   +F  R +E ++I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + + I+  RL L P +A F+ V   ++   +T +  +YE  KDEDGFLYM Y+S++TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIREQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: MLP3A_RAT (Microtubule-associated proteins 1A/1B light chain 3A OS=Rattus norvegicus GN=Map1lc3a PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.676e-18
Identity = 46/115 (40.00%), Postives = 74/115 (64.35%), Query Frame = 3
Query:   78 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPHTATLLDSVYESFKDEDGFLYMCYSSEKTFGY 416
            FK   +F  R +E ++I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + + I+  RL L P +A F+ V   ++   +T +  +YE  KDEDGFLYM Y+S++TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: MLP3A_MOUSE (Microtubule-associated proteins 1A/1B light chain 3A OS=Mus musculus GN=Map1lc3a PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.676e-18
Identity = 46/115 (40.00%), Postives = 74/115 (64.35%), Query Frame = 3
Query:   78 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPHTATLLDSVYESFKDEDGFLYMCYSSEKTFGY 416
            FK   +F  R +E ++I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + + I+  RL L P +A F+ V   ++   +T +  +YE  KDEDGFLYM Y+S++TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
The following BLAST results are available for this feature:
BLAST of EY665267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GBRAP_BOVIN5.855e-2445.54Gamma-aminobutyric acid receptor-associated protei... [more]
ATG8L_DICDI2.225e-2347.54Autophagy-related protein 8-like protein DDB_G0290... [more]
MLP3B_HUMAN3.007e-2044.17Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_BOVIN6.699e-2044.17Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_RAT1.949e-1942.50Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_MOUSE1.949e-1942.50Microtubule-associated proteins 1A/1B light chain ... [more]
MP3B2_HUMAN3.325e-1943.33Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_BOVIN2.815e-1840.00Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_RAT3.676e-1840.00Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_MOUSE3.676e-1840.00Microtubule-associated proteins 1A/1B light chain ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-H12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665267 ID=EY665267; Name=EY665267; organism=Citrus sinensis; type=EST; length=1077bp
ATTTCCCCGGGGTTCGACCCACAGCGTCCGCTTTCCTTGAGAATTGAGAC
GATACCGAGATGGGAAAGATGCAATCTTTCAAGGACGAGTTCACATTCGA
GCAAAGACTTGAAGAATCGCGCGAAATCATTGCGAAATACCCCGATCGAG
TCCCCGTAATTGCGGAAAGATATTCAAAAGCTGACCTTCCTGATATGGAA
AAGAAAAAATTTCTGGTTCCTCGGGACATGTCTGTTGGGCAATTTATTCA
CATTTTAAGCAGCAGGCTTCACCTGACCCCTGGAAAAGCTCTCTTTGTAT
TTGTGAAAGATACTTTACCGCATACAGCGACTTTATTGGACTCAGTCTAT
GAATCCTTCAAGGATGAGGATGGATTCCTGTATATGTGCTACAGCAGTGA
GAAAACCTTTGGTTATGATAAAATTCAGACTTGTTAATACTTGAACTTTG
TTCATGGCTGGTGTGTACCTGGGCTTACATGCCATTCCTTGTTGTGAATG
GATGTATAAAAACCATCAGGGGCATTGATGTTGAATATACTGGCTAAGTA
TATCCGGCAAAGTGGTATACATCAAAAATGTTCCTGGTGGGAAATACTTT
AAGATTCCTTCATCCTGCTTGTATTTTCAAAAAAATAAAAAAAAAAAGGG
GGGCTAGCATAGGAATCCAATTATTATGAGCTGGCGAGGAAAATATAATT
CCTTTAATATGGTCAATTATATTTCATTTACAGTAAGAAGTTAAACAACC
GGAAGGGGGAAGACCAAGATATACACAATGAATATACATGAAACTCCCCC
CCTCTCATGANCNAAAAACNAAAAACCACACACAAACCCTATCAAATTTC
TTCTTTCTTATATCATATTTTTTCTTATTCTAAATTATATATTAATTATT
ACTTAACCCTCTCTTCTACTTAATAATTCCTCATACATCATTTCTTTACC
TCCCTACCTTTCATAATCATAAAAATAATTAATTACAACATAATAATATT
ATAAAATAACCAATTATATCAATAATTATAATAACATAAAAAAAAATTAA
TATCAAATCAACTACAAAATCAATATA
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