EH406505

Overview
NameEH406505
Unique NameEH406505
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length433
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 5.544e-28
Identity = 49/86 (56.98%), Postives = 67/86 (77.91%), Query Frame = 3
Query:    6 YVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            + LHD++E+ +E+ L  HSE+LA+ +GL++TP   PL++IKNLRICGDCH  IK +S   GRE+ +RD  RFHHF+DG CSCGD+W
Sbjct:  675 FALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PP206_ARATH (Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 7.241e-28
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 3
Query:    9 VLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            V+ D+DE+ K ++L+YHSERLA+A+ LISTP   P+ ++KNLR C DCH AIK++SKIV RE+ VRD  RFHHF +G CSCGDYW
Sbjct:  741 VVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 9.457e-28
Identity = 52/89 (58.43%), Postives = 69/89 (77.53%), Query Frame = 3
Query:    9 VLHDIDEE----AKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            VLH ++EE     KE+ L  HSE++A+A+GLIST    P+R+ KNLR+CGDCHNA+K +S + GRE+++RD  RFHHF+DGKCSC DYW
Sbjct:  762 VLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PP419_ARATH (Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.235e-27
Identity = 51/87 (58.62%), Postives = 69/87 (79.31%), Query Frame = 3
Query:    3 RYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            R  LHD+++E KE+ L YHSERLAIA+GLI+T     + ++KNLR+C DCH  IK++S +VGRE+++RD  RFHHF++G CSCGDYW
Sbjct:  611 RSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGDYW 697          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PPR48_ARATH (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.613e-27
Identity = 52/85 (61.18%), Postives = 67/85 (78.82%), Query Frame = 3
Query:    9 VLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            V HD+ EE K + L+ HSE+LA+ YGLI T     +R+ KNLRIC DCHNA K++SK++ RE++VRDNKRFHHF++G CSCGDYW
Sbjct:  886 VQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PP108_ARATH (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.613e-27
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 3
Query:    6 YVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            +V HD++E  K K L YHSERLAIA+GLI  P   P+R+ KNLR+C DCHNA K +S + GRE++VRD  RFH F+DG CSCGD+W
Sbjct:  658 FVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.107e-27
Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 3
Query:   12 LHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            LHD++EE +E  ++ HSERLAIA+GLI+T P   +RIIKNLR+C DCH   K++SKI  R ++VRD  RFHHF+DG CSCGDYW
Sbjct:  709 LHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.107e-27
Identity = 54/85 (63.53%), Postives = 68/85 (80.00%), Query Frame = 3
Query:    9 VLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            VL D++E+ KE AL YHSE+LAIA+ L+ T P  P+RIIKNLRICGDCH  +K++SK+  RE++VRD  RFHHFRDG CSC D+W
Sbjct:  489 VLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.751e-27
Identity = 54/85 (63.53%), Postives = 67/85 (78.82%), Query Frame = 3
Query:    9 VLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            VL +++EE KE AL++HSE+LAIA+GLIST P   L I+KNLR+C +CH A K++SKI  RE+I RD  RFHHFRDG CSC DYW
Sbjct:  657 VLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PP367_ARATH (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.751e-27
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 3
Query:   18 DIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            D+DEE KE ++  HSE+LAIAYG++ T P   +RI+KNLR+C DCH   K++S++ GRELIVRD  RFHHFR+G CSC DYW
Sbjct:  541 DVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622          
The following BLAST results are available for this feature:
BLAST of EH406505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PPR53_ARATH5.544e-2856.98Pentatricopeptide repeat-containing protein At1g20... [more]
PP206_ARATH7.241e-2862.35Putative pentatricopeptide repeat-containing prote... [more]
PP272_ARATH9.457e-2858.43Pentatricopeptide repeat-containing protein At3g49... [more]
PP419_ARATH1.235e-2758.62Pentatricopeptide repeat-containing protein At5g46... [more]
PPR48_ARATH1.613e-2761.18Pentatricopeptide repeat-containing protein At1g18... [more]
PP108_ARATH1.613e-2760.47Putative pentatricopeptide repeat-containing prote... [more]
PP341_ARATH2.107e-2761.90Pentatricopeptide repeat-containing protein At4g30... [more]
PP295_ARATH2.107e-2763.53Pentatricopeptide repeat-containing protein At3g62... [more]
PPR21_ARATH2.751e-2763.53Pentatricopeptide repeat-containing protein At1g08... [more]
PP367_ARATH2.751e-2760.98Pentatricopeptide repeat-containing protein At5g06... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2DC02FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406505 ID=EH406505; Name=EH406505; organism=Citrus sinensis; type=EST; length=433bp
CAAGATATGTGCTTCATGACATTGACGAAGAGGCAAAAGAGAAGGCCTTG
CAATATCATAGTGAGCGATTGGCAATTGCTTATGGTTTGATTAGCACTCC
ACCTAGAATGCCTCTTAGGATTATCAAGAACCTCAGAATCTGTGGTGACT
GTCACAATGCAATCAAGATCATGTCAAAGATTGTTGGAAGAGAGCTAATC
GTTCGGGACAACAAGCGGTTTCATCACTTCAGGGATGGCAAATGCTCATG
TGGAGACTATTGGTAAAGCTGTCAACTCGGCTTATTCATGAGAGACTGTC
AATCTAGAATATTACCGCATGAAGGAAGCCAAATTAACTTTTTTAAAGAG
ATTTACTTGTATGAAATTTTGTTGGTGTTGTACATTGTGCTTGTATGTGG
ATTCTAGTATCATTTCAATGCAAATTGAGTTAT
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