EH406505

Overview
NameEH406505
Unique NameEH406505
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length433
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.594e-27
Identity = 50/86 (58.14%), Postives = 66/86 (76.74%), Query Frame = 3
Query:    6 YVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            +V  D++EE KE+ L YHSE+LA+A GLIST     +R++KNLR+CGDCH  +K++SKI  RE++VRDN RFH F +G CSC DYW
Sbjct:  600 FVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 3.594e-27
Identity = 49/86 (56.98%), Postives = 72/86 (83.72%), Query Frame = 3
Query:    9 VLH-DIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            V+H +++++ KE  L+YHSE+LAI +GL++TPP   +R++KNLR+C DCHNA K++S I GR++++RD +RFHHF DGKCSCGD+W
Sbjct:  518 VVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PP170_ARATH (Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.046e-26
Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = 3
Query:    3 RYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            R  LHDID+E+KE  L  HSER+A A  ++++ PR P  +IKNLR+C DCHNA+KIMS IVGRE+I RD KRFH  ++G C+C DYW
Sbjct:  529 RMALHDIDQESKETLLLGHSERIAFARAVLNSAPRKPFTVIKNLRVCVDCHNALKIMSDIVGREVITRDIKRFHQMKNGACTCKDYW 615          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PP346_ARATH (Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.366e-26
Identity = 50/87 (57.47%), Postives = 66/87 (75.86%), Query Frame = 3
Query:    3 RYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            +  LHD+D+E+K++ L  H+ER A     + TP R  +R++KNLR+C DCHNA+K+MSKIVGRELI RD KRFHH +DG CSC +YW
Sbjct:  451 KLALHDVDQESKDENLFNHNERFAFISTFLDTPARSLIRVMKNLRVCADCHNALKLMSKIVGRELISRDAKRFHHMKDGVCSCREYW 537          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PP198_ARATH (Pentatricopeptide repeat-containing protein At2g41080 OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.329e-26
Identity = 52/85 (61.18%), Postives = 63/85 (74.12%), Query Frame = 3
Query:    9 VLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            VLHD+DEE KE  L  HSE+LA+A+ L+  P   P+RIIKNLR+C DCH A K +S I  RE+ +RD  RFHHF +GKCSCGDYW
Sbjct:  566 VLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PPR10_ARATH (Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.973e-26
Identity = 48/84 (57.14%), Postives = 65/84 (77.38%), Query Frame = 3
Query:   12 LHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            +HDI+EE KE     HSE+LA+  G + T P   +RIIKNLRICGDCH+ +K +SKI  R++++RD ++FHHF+DG+CSCGDYW
Sbjct:  582 IHDIEEEEKENVTGIHSEKLALTLGFLRTAPGTTIRIIKNLRICGDCHSLMKYVSKISQRDILLRDARQFHHFKDGRCSCGDYW 665          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PP274_ARATH (Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.973e-26
Identity = 52/79 (65.82%), Postives = 63/79 (79.75%), Query Frame = 3
Query:   27 EEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            E  +E  L +HSE+LA+A+GL+ST     L ++KNLRICGDCHNAIK MS + GRE+IVRDN RFH F+DGKCSCGDYW
Sbjct:  643 EGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.189e-26
Identity = 47/87 (54.02%), Postives = 69/87 (79.31%), Query Frame = 3
Query:    3 RYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            +++L D+DE+ +E+  +YHSE+LAIAYGL++TP   PL+I +N RIC +CH  ++ +S + GRE++VRD  RFHHF++GKCSCG YW
Sbjct:  615 QHLLPDVDEKEEERVGRYHSEKLAIAYGLVNTPEWNPLQITQNHRICKNCHKVVEFISLVTGREMVVRDASRFHHFKEGKCSCGGYW 701          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.189e-26
Identity = 50/85 (58.82%), Postives = 64/85 (75.29%), Query Frame = 3
Query:    9 VLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            V+ DIDEE KE AL  HSE+ AIA+G++S    +P+RI+KNLR+CGDCH    ++SKI  RE+IVRD  RFHHF+DG CSC  +W
Sbjct:  528 VMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612          
BLAST of EH406505 vs. ExPASy Swiss-Prot
Match: PP373_ARATH (Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.777e-26
Identity = 48/87 (55.17%), Postives = 70/87 (80.46%), Query Frame = 3
Query:    6 YVLHDIDEEAKEKALQYHSERLAIAYGLIST-PPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 263
            + L+D+++E KE+ L YHSE+LA+A+ L +     +P+RI+KNLR+CGDCH+A K +SKI GR++I+RD+ RFHHF+DG CSC D+W
Sbjct:  909 FALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995          
The following BLAST results are available for this feature:
BLAST of EH406505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PP219_ARATH3.594e-2758.14Putative pentatricopeptide repeat-containing prote... [more]
PP145_ARATH3.594e-2756.98Pentatricopeptide repeat-containing protein At2g02... [more]
PP170_ARATH1.046e-2659.77Pentatricopeptide repeat-containing protein At2g25... [more]
PP346_ARATH1.366e-2657.47Pentatricopeptide repeat-containing protein At4g32... [more]
PP198_ARATH2.329e-2661.18Pentatricopeptide repeat-containing protein At2g41... [more]
PPR10_ARATH3.973e-2657.14Pentatricopeptide repeat-containing protein At1g04... [more]
PP274_ARATH3.973e-2665.82Pentatricopeptide repeat-containing protein At3g49... [more]
PP427_ARATH5.189e-2654.02Pentatricopeptide repeat-containing protein At5g50... [more]
PP410_ARATH5.189e-2658.82Putative pentatricopeptide repeat-containing prote... [more]
PP373_ARATH6.777e-2655.17Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2DC02FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406505 ID=EH406505; Name=EH406505; organism=Citrus sinensis; type=EST; length=433bp
CAAGATATGTGCTTCATGACATTGACGAAGAGGCAAAAGAGAAGGCCTTG
CAATATCATAGTGAGCGATTGGCAATTGCTTATGGTTTGATTAGCACTCC
ACCTAGAATGCCTCTTAGGATTATCAAGAACCTCAGAATCTGTGGTGACT
GTCACAATGCAATCAAGATCATGTCAAAGATTGTTGGAAGAGAGCTAATC
GTTCGGGACAACAAGCGGTTTCATCACTTCAGGGATGGCAAATGCTCATG
TGGAGACTATTGGTAAAGCTGTCAACTCGGCTTATTCATGAGAGACTGTC
AATCTAGAATATTACCGCATGAAGGAAGCCAAATTAACTTTTTTAAAGAG
ATTTACTTGTATGAAATTTTGTTGGTGTTGTACATTGTGCTTGTATGTGG
ATTCTAGTATCATTTCAATGCAAATTGAGTTAT
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