CX043498

Overview
NameCX043498
Unique NameCX043498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043498 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.053e-35
Identity = 74/101 (73.27%), Postives = 81/101 (80.20%), Query Frame = 3
Query:  486 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVXAIVTGKGPIENLYDHIADPV 788
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFV AIVTGKGP+ENL DHIADPV
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPV 252          
BLAST of CX043498 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.053e-35
Identity = 74/101 (73.27%), Postives = 81/101 (80.20%), Query Frame = 3
Query:  486 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVXAIVTGKGPIENLYDHIADPV 788
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFV AIVTGKGP+ENL DHIADPV
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPV 252          
BLAST of CX043498 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.502e-35
Identity = 73/101 (72.28%), Postives = 81/101 (80.20%), Query Frame = 3
Query:  486 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVXAIVTGKGPIENLYDHIADPV 788
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFV AIVTGKGP+ENL DH+ADPV
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 101          
BLAST of CX043498 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.502e-35
Identity = 73/101 (72.28%), Postives = 81/101 (80.20%), Query Frame = 3
Query:  486 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVXAIVTGKGPIENLYDHIADPV 788
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFV AIVTGKGP+ENL DH+ADPV
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 250          
BLAST of CX043498 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.502e-35
Identity = 73/101 (72.28%), Postives = 81/101 (80.20%), Query Frame = 3
Query:  486 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVXAIVTGKGPIENLYDHIADPV 788
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFV AIVTGKGP+ENL DH+ADPV
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 250          
BLAST of CX043498 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.019e-34
Identity = 74/109 (67.89%), Postives = 83/109 (76.15%), Query Frame = 3
Query:  465 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXX-AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVXAIVTGKGPIENLYDHIADPV 788
            LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+                 +FDPL    DP+ FAELKVKE+KNGRLAMFSMFGFFV AIVTGKGP+ENL DH+ADPV
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 109          
BLAST of CX043498 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.237e-28
Identity = 85/262 (32.44%), Postives = 123/262 (46.95%), Query Frame = 3
Query:   42 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQS-------IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVXAIVTGKGPIENLYDHIADP 785
            A+S I   AF+  ++ R  +          GGR        +TP +       +   PDRP +        P +L G  PGD+G+D  GL++DPE+   N++ E++H RWAMLGA G   PE+L+K G+      W+ AG Q +      +     L   + +L  WA       ++  G V    I                  FDPLG     P +  EL+ KE+KNGRLAM ++ G +   I TG GPI+NL+ H+ADP
Sbjct:    6 ASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CX043498 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.206e-27
Identity = 101/281 (35.94%), Postives = 136/281 (48.40%), Query Frame = 3
Query:   39 MATSAIQQSA---FAGQTALRQS---NEFVRKVGVADGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR-----------------IXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVXAIVTGKGPIENLYDHIADPV 788
            MAT A+  S+   FA + A+RQS         VG +  G +       +TP     G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F + R L   EVI+ R+AMLGA+G + PE L K G+   E    WF+ G  I   G  +Y  +           ++  ++ LMGF E  R                 +                 F+PLG   D     ELK+KE+KNGRLAM ++ G+F+  +VTG GP +NL DH+ADPV
Sbjct:    1 MATQALVSSSSLTFAAE-AVRQSFRARSLPSSVGCSRKGLVR----AAATPPVKQGGVDRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPV 264          
BLAST of CX043498 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.058e-27
Identity = 76/205 (37.07%), Postives = 102/205 (49.76%), Query Frame = 3
Query:  192 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVXAIVTGKGPIENLYDHIADP 785
            PDRP +        P +L G  PGD+G+D  GL +DPE+   N + E++HSRWAMLGA G   PE L+K GV      W+ AG Q +      +     L   + +L  WA       ++  G V    I                  FDPLG     P +  EL+ KE+KNGRLAM ++ G +   I TG GPI+NL+ H+ADP
Sbjct:   63 PDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CX043498 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.820e-27
Identity = 76/186 (40.86%), Postives = 98/186 (52.69%), Query Frame = 3
Query:  234 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-XAIVTGKGPIENLYDHIADP 785
            PSYL G  PGD+G+D+ GL   P    + +E E+IH RWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + + FVE  R                 AFDPLG + DP +F ELKVKE+KNGRLA+ ++ GF V  +   G GP+ENL  H+ADP
Sbjct:   56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADP 229          
The following BLAST results are available for this feature:
BLAST of CX043498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB2F_SOLLC2.053e-3573.27Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.053e-3573.27Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC3.502e-3572.28Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC3.502e-3572.28Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC3.502e-3572.28Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA1.019e-3467.89Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB12_SOLLC9.237e-2832.44Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_PEA1.206e-2735.94Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB12_PETHY2.058e-2737.07Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB11_SOLLC7.820e-2740.86Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11D12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11D12-G23-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043498 ID=CX043498; Name=CX043498; organism=Citrus sinensis; type=EST; length=789bp
CTTCAGCAACAAAAGGAAAAGCTTTCGCATAAGAACATATGGCAACCTCT
GCTATCCAACAATCAGCATTTGCTGGCCAGACCGCCTTGAGGCAATCCAA
TGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGGCCGTATCACCATGA
GGAGGACTGTCAAATCCACTCCCCAGAGCATCTGGTACGGCCCAGACCGC
CCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACTTGACTGG
TGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCAGCAGACC
CCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGATGG
GCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAAGAA
TGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAATCT
TCTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCT
CAGAGCATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTCATGGGTTTTGT
TGAAGGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCAC
TTTACCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCGAT
CAATTTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTAT
GTTCTCCATGTTTGGATTCTTTGTTCANGCTATTGTCACTGGGAAGGGTC
CAATTGAGAACCTCTACGACCACATTGCTGATCCTGTGG
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