CV884336

Overview
NameCV884336
Unique NameCV884336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884336 vs. ExPASy Swiss-Prot
Match: DXS_BURP0 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei (strain 1106a) GN=dxs PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.658e-13
Identity = 61/214 (28.50%), Postives = 94/214 (43.93%), Query Frame = 2
Query:  293 EKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGV-GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIER-----EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRVIRPLDRSTINA 913
            EK  PER  D  I E        G A  GLKPVV   +  F  +A D +I+  A  N        +P+VF        G  GA H+  Y  A+   +P + V++     + R +L  A++ P+P       + Y          + +   +P+GK ++ R     +GK + I AF  +V  SL AA+ L      A V N+R ++P+D   + A
Sbjct:  351 EKRFPERYYDVGIAEQHAVTFAGGLATEGLKPVVAIYS-TFLQRAYDQLIHDVALQN--------LPVVFAIDRAGLVGADGATHAGAYDLAFLRCIPNMTVMAASDENECRQMLHTALQQPNPTA-----VRYPRGAGTGVATVKAFTEIPLGKGEVRRRTSQPDGKRIAILAFGTMVAPSLAAADAL-----DATVANMRFVKPIDAELVQA 545          
BLAST of CV884336 vs. ExPASy Swiss-Prot
Match: DXS_BURMA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia mallei GN=dxs PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.658e-13
Identity = 61/214 (28.50%), Postives = 94/214 (43.93%), Query Frame = 2
Query:  293 EKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGV-GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIER-----EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRVIRPLDRSTINA 913
            EK  PER  D  I E        G A  GLKPVV   +  F  +A D +I+  A  N        +P+VF        G  GA H+  Y  A+   +P + V++     + R +L  A++ P+P       + Y          + +   +P+GK ++ R     +GK + I AF  +V  SL AA+ L      A V N+R ++P+D   + A
Sbjct:  351 EKRFPERYYDVGIAEQHAVTFAGGLATEGLKPVVAIYS-TFLQRAYDQLIHDVALQN--------LPVVFAIDRAGLVGADGATHAGAYDLAFLRCIPNMTVMAASDENECRQMLHTALQQPNPTA-----VRYPRGAGTGVATVKAFTEIPLGKGEVRRRTSQPDGKRIAILAFGTMVAPSLAAADAL-----DATVANMRFVKPIDAELVQA 545          
BLAST of CV884336 vs. ExPASy Swiss-Prot
Match: DXS_SYNS3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain CC9311) GN=dxs PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.165e-13
Identity = 60/210 (28.57%), Postives = 95/210 (45.24%), Query Frame = 2
Query:  287 LLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGV-GAQHSHCYAAWYA-SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRVIRPLDRSTIN 910
            +L+K  P++ +D  I E     +  G A  GL+PVV   +  F  +A D +I+          G   +P+ F        G  G  H   Y   Y  ++P   V++P    + + +L   +    P   L      GE  P+  E  ++   LPIG  ++ REG DV I A+  +V  ++  A+ LA  G+   VIN R +RPLD + I+
Sbjct:  354 ILQKALPDQYIDVGIAEQHAVTLSAGMACDGLRPVVAIYS-TFLQRAFDQLIHDV--------GIQKLPVTFVLDRAGIVGADGPTHQGQYDISYMRAIPNFTVMAPKDEAELQRMLVTCLNHDGPTA-LRIPRGPGEGVPLMEEGWEA---LPIGCGEVVREGNDVLIVAYGAMVPKAMATAKCLAAVGVEVAVINARYLRPLDEALIH 550          
BLAST of CV884336 vs. ExPASy Swiss-Prot
Match: DXS_DESHD (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=dxs PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.165e-13
Identity = 65/244 (26.64%), Postives = 103/244 (42.21%), Query Frame = 2
Query:  179 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRVIRPLDRSTI 907
            +    AL E    DP++  +   +    G       L  +  P+R  D  I E          A+ G+KPVV   +  F  +A D +++       +    + + I      G     G  H   +  ++   +P L  ++P    + R +L  +++   PV      L Y  S     E+ +    LP+GKA+I +EGKD+T+     +V   L AA  L   G+ A VINLR I PLDR +I
Sbjct:  319 QVFGEALCELAEKDPRITAITAAMPSGTGL-----NLFAQKFPDRFFDVGIAEQHAVTFSAALAFGGMKPVVSIYS-TFYQRAYDQVLHDVC----LPHANVVMAI---DRAGVVGDDGPTHHGVFDISFLRVIPNLVFMAPKDENELRHMLYTSLQLDGPVA-----LRYPRSVGQGVELTEELRELPVGKAEILQEGKDITLIGVGPMVYTCLAAAVELRHRGVEATVINLRYINPLDRESI 544          
BLAST of CV884336 vs. ExPASy Swiss-Prot
Match: DXS_CARHZ (1-deoxy-D-xylulose-5-phosphate synthase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dxs PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.165e-13
Identity = 62/199 (31.16%), Postives = 88/199 (44.22%), Query Frame = 2
Query:  305 PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGV-GAQHSHCYAAWYAS-VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRVIRPLD 895
            PER  D  I E     +  G A  GLKPVV   +  F  ++ D II+     N        +P+VF        G  G  H   +   Y   +P L ++ P + +  R +L  A+    PV      L Y     V  E+      LPIG A+I +EG D  +    + +  +LKAA+ L  EGIS  VI+ R ++PLD
Sbjct:  356 PERFYDVGIAEQHAVTMAAGMACEGLKPVVAIYS-TFLQRSFDQIIHDVCLQN--------LPVVFAVDRAGIVGEDGPTHHGIFDLSYLRMIPNLTIMVPRNEDMLRKMLFTALNHSGPVA-----LRYPRGAAVGVELTPYEQ-LPIGTAEILKEGSDGVVIGVGRPLNYALKAAQKLENEGISLTVIDARFVKPLD 539          
BLAST of CV884336 vs. ExPASy Swiss-Prot
Match: DXS_DESHY (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfitobacterium hafniense (strain Y51) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.693e-13
Identity = 58/202 (28.71%), Postives = 90/202 (44.55%), Query Frame = 2
Query:  305 PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRVIRPLDRSTI 907
            P+R  D  I E          A+ G+KPVV   +  F  +A D +++       +    + + I      G     G  H   +  ++   +P L  ++P    + R +L  +++   PV      L Y  S     E+ +    LP+GKA+I +EGKD+T+     +V   L AA  L   G+ A VINLR I PLDR +I
Sbjct:  356 PDRFFDVGIAEQHAVTFSAALAFGGMKPVVSIYS-TFYQRAYDQVLHDVC----LPHANVVMAI---DRAGVVGDDGPTHHGVFDISFLRVIPNLVFMAPKDENELRHMLYTSLQLDGPVA-----LRYPRSVGQGVELTEELRELPVGKAEILQEGKDITLIGVGPMVYTCLAAAVELRHRGVEATVINLRYINPLDRESI 544          
BLAST of CV884336 vs. ExPASy Swiss-Prot
Match: DXS_CYAA5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.693e-13
Identity = 60/232 (25.86%), Postives = 100/232 (43.10%), Query Frame = 2
Query:  218 DPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGV-GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRVIRPLDRSTI 907
            DPK+  +   +    G  K+   L     P++ +D  I E     +  G A  G++PVV   +  F  +A D +++     N        +P+ F        G  G  H   Y  A+   +P L +++P    + + ++   I   D  + +      G   P+  E  +    + IGK +I R G DV +  +  +V  SL+ AEIL + GI A V+N R ++PLD   I
Sbjct:  336 DPKIIGITAAMATGTGLDKLHAKL-----PKQYIDVGIAEQHAVTLSAGLACEGMRPVVAIYS-TFLQRAYDQVLHDVCIQN--------LPVFFCLDRAGIVGADGPTHQGLYDIAYLRCIPNLTIMAPKDEAELQRMVVTGINHTDGPIAMRYPRGSGVGVPLMEEGWEP---VSIGKGEILRNGDDVLLVGYGTMVHQSLQVAEILKEHGIEATVVNARFVKPLDTELI 550          
BLAST of CV884336 vs. ExPASy Swiss-Prot
Match: DXS_CHRVO (1-deoxy-D-xylulose-5-phosphate synthase OS=Chromobacterium violaceum GN=dxs PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.693e-13
Identity = 62/207 (29.95%), Postives = 87/207 (42.03%), Query Frame = 2
Query:  293 EKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGV-GAQHSHCYAAWYAS-VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRVIRPLDRSTI 907
            EK  P+R  D  I E        G A  GLKPVV   +  F  +  D +I+  A  N        +P++F        G  G  H+  +   Y   +P + V++P    + R LL  A +   P       + Y       AE+      LPIGK  + R GK V I AF  +V  +L AAE L      A V ++R ++PLD   I
Sbjct:  351 EKEHPDRYYDVAIAEQHAVTFAGGMACDGLKPVVAIYS-TFLQRGYDQLIHDVALQN--------LPVMFALDRAGLVGADGPTHAGAFDLSYLRCIPNMTVMAPSDENECRQLLYTAFQLDTPTA-----VRYPRGTGPGAEIQQQMAALPIGKGVVRRRGKQVAILAFGSMVHPALAAAEAL-----DATVADMRFVKPLDAELI 538          
BLAST of CV884336 vs. ExPASy Swiss-Prot
Match: DXS_BURTA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.693e-13
Identity = 61/212 (28.77%), Postives = 93/212 (43.87%), Query Frame = 2
Query:  293 EKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGV-GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIER-----EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRVIRPLDRSTI 907
            EK  PER  D  I E        G A  GLKPVV   +  F  +A D +I+  A  N        +P+VF        G  GA H+  Y  A+   +P + V++     + R +L  A++ P+P       + Y          + +   +P+GK ++ R     +GK V I AF  +V  SL AA+ L      A V N+R ++P+D   +
Sbjct:  351 EKRFPERYYDVGIAEQHAVTFAGGLATEGLKPVVAIYS-TFLQRAYDQLIHDVALQN--------LPVVFAIDRAGLVGADGATHAGAYDLAFLRCIPNMTVMAASDENECRQMLHTALQQPNPTA-----VRYPRGAGTGVATVKAFTEIPLGKGEVRRRTSQPDGKRVAILAFGTMVAPSLAAADAL-----DATVANMRFVKPIDAELV 543          
BLAST of CV884336 vs. ExPASy Swiss-Prot
Match: DXS_NATTJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.824e-13
Identity = 59/203 (29.06%), Postives = 87/203 (42.86%), Query Frame = 2
Query:  305 PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSHCYAAWYA-SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRVIRPLDRSTI 907
            PER  D  I E        G A  G KPVV   +  F  +A D II+     +         P++F     G   G G  H   Y   Y  S+P L V++P    + + +L  A+    PV      + Y         + ++   +P+ K +  REG  V +    K+V   L+ A++L KEGI   V N R ++PLD S+I
Sbjct:  358 PERFFDVGIAEQHAITFAAGLARKGFKPVVAIYS-TFLQRAYDQIIHDVCMQDN--------PVIFAIDRAGIVGGDGETHQGLYDLSYLRSIPNLIVMAPKDEAELQRMLNTAVNINKPVA-----IRYPRGKGEGVTLWENMTPIPLYKGETIREGSQVAMIGVGKMVPDMLEVADMLKKEGIEPTVFNARFVKPLDESSI 546          
The following BLAST results are available for this feature:
BLAST of CV884336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
DXS_BURP01.658e-1328.501-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURMA1.658e-1328.501-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_SYNS32.165e-1328.571-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_DESHD2.165e-1326.641-deoxy-D-xylulose-5-phosphate synthase OS=Desulfi... [more]
DXS_CARHZ2.165e-1331.161-deoxy-D-xylulose-5-phosphate synthase OS=Carboxy... [more]
DXS_DESHY3.693e-1328.711-deoxy-D-xylulose-5-phosphate synthase OS=Desulfi... [more]
DXS_CYAA53.693e-1325.861-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_CHRVO3.693e-1329.951-deoxy-D-xylulose-5-phosphate synthase OS=Chromob... [more]
DXS_BURTA3.693e-1328.771-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_NATTJ4.824e-1329.061-deoxy-D-xylulose-5-phosphate synthase OS=Natrana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002G06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884336 ID=CV884336; Name=CV884336; organism=Citrus sinensis; type=EST; length=916bp
TCCCTCTCCACGGCGATCGGATCGCTGATAACTTTCACTTCTGGTAATCT
CGTTAAAGATGTGGGGAATTATTAGGCAGAAAGTGGCTGCTGGAGGAGGT
TCTCCTGTTGCGAGAATTCGCCCTGTGGTATCCAATTTGAGAAACTACTC
ATCTGCAGTTAAACAGATGATGGTGAGAGAGGCTTTAAACTCTGCTCTTG
ATGAGGAGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGCGAAGAGGTT
GGGGAATATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGGAGAAATA
TGGCCCTGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGTTTTACTG
GGATTGGAGTTGGTGCTGCATACTATGGTTTGAAGCCTGTTGTGGAATTC
ATGACATTTAACTTCTCTATGCAGGCAATTGATCACATCATTAATTCTGC
TGCAAAATCAAATTACATGTCTTCTGGCCAAATATCGGTTCCTATCGTCT
TCAGAGGGCCTAATGGTGCTGCTGCTGGAGTGGGTGCCCAACACTCTCAC
TGTTATGCAGCATGGTATGCCTCAGTCCCTGGGTTGAAAGTACTGAGCCC
ATACAGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATAAGGGATC
CGGATCCTGTTGTTTTTCTTGAAAATGAGTTGTTATATGGTGAGTCATTC
CCGGTATCAGCTGAAGTTCTTGATTCCAGTTTTTGCCTTCCAATTGGGAA
AGCTAAAATTGAGAGAGAAGGAAAGGATGTAACCATTACAGCTTTCTCAA
AAATTGTGGGCCTTTCACTCAAGGCGGCTGAGATACTTGCAAAGGAAGGA
ATAAGTGCTGAGGTTATCAATCTGCGGGTCATTAGGCCACTAGATAGATC
CACAATCAATGCTTCT
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