CV884336
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV884336 vs. ExPASy Swiss-Prot
Match: DXS_BURP0 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei (strain 1106a) GN=dxs PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.658e-13 Identity = 61/214 (28.50%), Postives = 94/214 (43.93%), Query Frame = 2 Query: 293 EKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGV-GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIER-----EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRVIRPLDRSTINA 913 EK PER D I E G A GLKPVV + F +A D +I+ A N +P+VF G GA H+ Y A+ +P + V++ + R +L A++ P+P + Y + + +P+GK ++ R +GK + I AF +V SL AA+ L A V N+R ++P+D + A Sbjct: 351 EKRFPERYYDVGIAEQHAVTFAGGLATEGLKPVVAIYS-TFLQRAYDQLIHDVALQN--------LPVVFAIDRAGLVGADGATHAGAYDLAFLRCIPNMTVMAASDENECRQMLHTALQQPNPTA-----VRYPRGAGTGVATVKAFTEIPLGKGEVRRRTSQPDGKRIAILAFGTMVAPSLAAADAL-----DATVANMRFVKPIDAELVQA 545
BLAST of CV884336 vs. ExPASy Swiss-Prot
Match: DXS_BURMA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia mallei GN=dxs PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.658e-13 Identity = 61/214 (28.50%), Postives = 94/214 (43.93%), Query Frame = 2 Query: 293 EKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGV-GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIER-----EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRVIRPLDRSTINA 913 EK PER D I E G A GLKPVV + F +A D +I+ A N +P+VF G GA H+ Y A+ +P + V++ + R +L A++ P+P + Y + + +P+GK ++ R +GK + I AF +V SL AA+ L A V N+R ++P+D + A Sbjct: 351 EKRFPERYYDVGIAEQHAVTFAGGLATEGLKPVVAIYS-TFLQRAYDQLIHDVALQN--------LPVVFAIDRAGLVGADGATHAGAYDLAFLRCIPNMTVMAASDENECRQMLHTALQQPNPTA-----VRYPRGAGTGVATVKAFTEIPLGKGEVRRRTSQPDGKRIAILAFGTMVAPSLAAADAL-----DATVANMRFVKPIDAELVQA 545
BLAST of CV884336 vs. ExPASy Swiss-Prot
Match: DXS_SYNS3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain CC9311) GN=dxs PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.165e-13 Identity = 60/210 (28.57%), Postives = 95/210 (45.24%), Query Frame = 2 Query: 287 LLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGV-GAQHSHCYAAWYA-SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRVIRPLDRSTIN 910 +L+K P++ +D I E + G A GL+PVV + F +A D +I+ G +P+ F G G H Y Y ++P V++P + + +L + P L GE P+ E ++ LPIG ++ REG DV I A+ +V ++ A+ LA G+ VIN R +RPLD + I+ Sbjct: 354 ILQKALPDQYIDVGIAEQHAVTLSAGMACDGLRPVVAIYS-TFLQRAFDQLIHDV--------GIQKLPVTFVLDRAGIVGADGPTHQGQYDISYMRAIPNFTVMAPKDEAELQRMLVTCLNHDGPTA-LRIPRGPGEGVPLMEEGWEA---LPIGCGEVVREGNDVLIVAYGAMVPKAMATAKCLAAVGVEVAVINARYLRPLDEALIH 550
BLAST of CV884336 vs. ExPASy Swiss-Prot
Match: DXS_DESHD (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=dxs PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.165e-13 Identity = 65/244 (26.64%), Postives = 103/244 (42.21%), Query Frame = 2 Query: 179 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRVIRPLDRSTI 907 + AL E DP++ + + G L + P+R D I E A+ G+KPVV + F +A D +++ + + + I G G H + ++ +P L ++P + R +L +++ PV L Y S E+ + LP+GKA+I +EGKD+T+ +V L AA L G+ A VINLR I PLDR +I Sbjct: 319 QVFGEALCELAEKDPRITAITAAMPSGTGL-----NLFAQKFPDRFFDVGIAEQHAVTFSAALAFGGMKPVVSIYS-TFYQRAYDQVLHDVC----LPHANVVMAI---DRAGVVGDDGPTHHGVFDISFLRVIPNLVFMAPKDENELRHMLYTSLQLDGPVA-----LRYPRSVGQGVELTEELRELPVGKAEILQEGKDITLIGVGPMVYTCLAAAVELRHRGVEATVINLRYINPLDRESI 544
BLAST of CV884336 vs. ExPASy Swiss-Prot
Match: DXS_CARHZ (1-deoxy-D-xylulose-5-phosphate synthase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dxs PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.165e-13 Identity = 62/199 (31.16%), Postives = 88/199 (44.22%), Query Frame = 2 Query: 305 PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGV-GAQHSHCYAAWYAS-VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRVIRPLD 895 PER D I E + G A GLKPVV + F ++ D II+ N +P+VF G G H + Y +P L ++ P + + R +L A+ PV L Y V E+ LPIG A+I +EG D + + + +LKAA+ L EGIS VI+ R ++PLD Sbjct: 356 PERFYDVGIAEQHAVTMAAGMACEGLKPVVAIYS-TFLQRSFDQIIHDVCLQN--------LPVVFAVDRAGIVGEDGPTHHGIFDLSYLRMIPNLTIMVPRNEDMLRKMLFTALNHSGPVA-----LRYPRGAAVGVELTPYEQ-LPIGTAEILKEGSDGVVIGVGRPLNYALKAAQKLENEGISLTVIDARFVKPLD 539
BLAST of CV884336 vs. ExPASy Swiss-Prot
Match: DXS_DESHY (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfitobacterium hafniense (strain Y51) GN=dxs PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.693e-13 Identity = 58/202 (28.71%), Postives = 90/202 (44.55%), Query Frame = 2 Query: 305 PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRVIRPLDRSTI 907 P+R D I E A+ G+KPVV + F +A D +++ + + + I G G H + ++ +P L ++P + R +L +++ PV L Y S E+ + LP+GKA+I +EGKD+T+ +V L AA L G+ A VINLR I PLDR +I Sbjct: 356 PDRFFDVGIAEQHAVTFSAALAFGGMKPVVSIYS-TFYQRAYDQVLHDVC----LPHANVVMAI---DRAGVVGDDGPTHHGVFDISFLRVIPNLVFMAPKDENELRHMLYTSLQLDGPVA-----LRYPRSVGQGVELTEELRELPVGKAEILQEGKDITLIGVGPMVYTCLAAAVELRHRGVEATVINLRYINPLDRESI 544
BLAST of CV884336 vs. ExPASy Swiss-Prot
Match: DXS_CYAA5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=dxs PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.693e-13 Identity = 60/232 (25.86%), Postives = 100/232 (43.10%), Query Frame = 2 Query: 218 DPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGV-GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRVIRPLDRSTI 907 DPK+ + + G K+ L P++ +D I E + G A G++PVV + F +A D +++ N +P+ F G G H Y A+ +P L +++P + + ++ I D + + G P+ E + + IGK +I R G DV + + +V SL+ AEIL + GI A V+N R ++PLD I Sbjct: 336 DPKIIGITAAMATGTGLDKLHAKL-----PKQYIDVGIAEQHAVTLSAGLACEGMRPVVAIYS-TFLQRAYDQVLHDVCIQN--------LPVFFCLDRAGIVGADGPTHQGLYDIAYLRCIPNLTIMAPKDEAELQRMVVTGINHTDGPIAMRYPRGSGVGVPLMEEGWEP---VSIGKGEILRNGDDVLLVGYGTMVHQSLQVAEILKEHGIEATVVNARFVKPLDTELI 550
BLAST of CV884336 vs. ExPASy Swiss-Prot
Match: DXS_CHRVO (1-deoxy-D-xylulose-5-phosphate synthase OS=Chromobacterium violaceum GN=dxs PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.693e-13 Identity = 62/207 (29.95%), Postives = 87/207 (42.03%), Query Frame = 2 Query: 293 EKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGV-GAQHSHCYAAWYAS-VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRVIRPLDRSTI 907 EK P+R D I E G A GLKPVV + F + D +I+ A N +P++F G G H+ + Y +P + V++P + R LL A + P + Y AE+ LPIGK + R GK V I AF +V +L AAE L A V ++R ++PLD I Sbjct: 351 EKEHPDRYYDVAIAEQHAVTFAGGMACDGLKPVVAIYS-TFLQRGYDQLIHDVALQN--------LPVMFALDRAGLVGADGPTHAGAFDLSYLRCIPNMTVMAPSDENECRQLLYTAFQLDTPTA-----VRYPRGTGPGAEIQQQMAALPIGKGVVRRRGKQVAILAFGSMVHPALAAAEAL-----DATVADMRFVKPLDAELI 538
BLAST of CV884336 vs. ExPASy Swiss-Prot
Match: DXS_BURTA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=dxs PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.693e-13 Identity = 61/212 (28.77%), Postives = 93/212 (43.87%), Query Frame = 2 Query: 293 EKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGV-GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIER-----EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRVIRPLDRSTI 907 EK PER D I E G A GLKPVV + F +A D +I+ A N +P+VF G GA H+ Y A+ +P + V++ + R +L A++ P+P + Y + + +P+GK ++ R +GK V I AF +V SL AA+ L A V N+R ++P+D + Sbjct: 351 EKRFPERYYDVGIAEQHAVTFAGGLATEGLKPVVAIYS-TFLQRAYDQLIHDVALQN--------LPVVFAIDRAGLVGADGATHAGAYDLAFLRCIPNMTVMAASDENECRQMLHTALQQPNPTA-----VRYPRGAGTGVATVKAFTEIPLGKGEVRRRTSQPDGKRVAILAFGTMVAPSLAAADAL-----DATVANMRFVKPIDAELV 543
BLAST of CV884336 vs. ExPASy Swiss-Prot
Match: DXS_NATTJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=dxs PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.824e-13 Identity = 59/203 (29.06%), Postives = 87/203 (42.86%), Query Frame = 2 Query: 305 PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSHCYAAWYA-SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRVIRPLDRSTI 907 PER D I E G A G KPVV + F +A D II+ + P++F G G G H Y Y S+P L V++P + + +L A+ PV + Y + ++ +P+ K + REG V + K+V L+ A++L KEGI V N R ++PLD S+I Sbjct: 358 PERFFDVGIAEQHAITFAAGLARKGFKPVVAIYS-TFLQRAYDQIIHDVCMQDN--------PVIFAIDRAGIVGGDGETHQGLYDLSYLRSIPNLIVMAPKDEAELQRMLNTAVNINKPVA-----IRYPRGKGEGVTLWENMTPIPLYKGETIREGSQVAMIGVGKMVPDMLEVADMLKKEGIEPTVFNARFVKPLDESSI 546 The following BLAST results are available for this feature:
BLAST of CV884336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 193
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884336 ID=CV884336; Name=CV884336; organism=Citrus sinensis; type=EST; length=916bpback to top |